Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 2.9e-221 771.5 375 100.0
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 2.8e-160 568.9 379 75.5
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 5.5e-156 554.7 420 69.0
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 4.8e-144 515.0 379 68.9
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 4.4e-137 491.9 377 65.8
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 1.3e-136 490.3 384 67.4
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 4.1e-135 485.3 382 67.3
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 2.7e-134 482.6 376 66.8
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 4.3e-132 475.3 395 66.1
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 6.1e-131 471.5 396 66.4
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 2.3e-130 469.5 381 65.4
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 4.0e-130 468.8 380 66.1
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 2.6e-129 466.1 381 64.8
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 2.4e-127 459.5 376 64.1
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 2.5e-124 449.5 384 64.3
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 8.0e-123 444.5 377 63.4
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 2.9e-120 436.0 378 63.2
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 4.1e-119 432.2 314 70.1
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 1.0e-117 427.6 381 60.1
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 3.3e-116 422.5 378 62.4
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 7.3e-116 421.4 386 59.6
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 7.3e-116 421.4 381 59.1
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 2.3e-114 416.4 396 60.6
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 5.2e-114 415.2 378 61.6
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 2.6e-113 412.9 391 58.6
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 3.7e-112 409.1 342 65.2
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 4.9e-112 408.7 395 59.5
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 8.3e-112 407.9 407 55.5
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 1.4e-111 407.1 372 60.8
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 5.4e-111 405.2 395 59.0
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 1.2e-110 404.1 311 66.6
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 2.7e-110 402.9 312 65.4
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 3.0e-109 399.4 310 68.1
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 2.5e-108 396.4 532 47.7
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 3.3e-108 396.0 308 68.2
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 5.6e-108 395.2 364 60.7
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 2.1e-107 393.3 370 59.2
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 2.8e-107 392.9 383 58.2
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 3.6e-107 392.5 343 60.3
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 8.1e-107 391.3 400 55.8
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 4.0e-106 389.0 428 53.7
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.2e-105 387.5 366 60.1
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 2.0e-105 386.7 383 57.7
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 2.6e-105 386.3 403 55.6
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 1.1e-103 380.9 382 57.9
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 1.4e-103 380.6 367 58.3
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 1.9e-103 380.2 362 57.7
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 2.5e-100 369.8 378 56.9
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 2.5e-100 369.8 321 63.9
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 4.3e-100 369.0 375 56.5
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 5.6e-100 368.6 372 59.7
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 2.8e-99 366.3 321 62.3
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 3.6e-99 365.9 432 51.4
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 4.8e-99 365.5 315 61.6
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 3.4e-97 359.4 390 55.4
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 7.6e-97 358.2 313 61.7
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 1.3e-96 357.5 301 64.5
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 5.4e-95 352.1 419 50.4
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 1.2e-94 350.9 382 54.5
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 1.6e-94 350.5 367 56.4
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 1.6e-94 350.5 388 56.4
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 3.9e-93 345.9 533 44.1
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 5.1e-93 345.5 365 55.1
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 5.1e-93 345.5 365 55.1
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 1.5e-92 344.0 317 59.3
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 5.6e-92 342.0 455 46.6
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 9.6e-92 341.3 389 53.7
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 1.3e-91 340.9 322 58.4
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 4.8e-91 339.0 330 57.0
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 9.3e-87 324.7 314 57.6
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 3.5e-86 322.8 337 54.3
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 3.5e-86 322.8 377 53.3
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 7.9e-86 321.6 402 53.5
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 2.3e-85 320.1 235 70.6
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 1.2e-81 307.8 307 54.7
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 1.5e-81 307.4 404 47.3
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 3.8e-80 302.8 411 52.1
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 1.1e-79 301.2 280 61.1
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 3.0e-77 293.1 296 54.4
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 1.5e-76 290.8 382 50.0
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 3.7e-75 286.2 373 49.3
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 1.8e-74 283.9 467 42.6
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 9.0e-74 281.6 490 41.6
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 3.8e-72 276.2 463 42.5
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 5.0e-72 275.8 385 47.3
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 2.7e-70 270.0 362 49.2
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 5.1e-69 265.8 301 52.2
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 1.5e-68 264.2 394 48.0
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 3.4e-65 253.1 348 46.6
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 6.3e-59 232.3 370 47.3
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 6.3e-59 232.3 202 58.4
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 9.1e-58 228.4 392 41.6
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 1.4e-55 221.1 229 59.0
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 3.2e-55 219.9 393 41.5
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 4.2e-55 219.5 401 42.1
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 1.2e-54 218.0 400 42.0
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 8.8e-53 211.8 410 40.5
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 7.4e-52 208.8 197 60.9
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 2.2e-51 207.2 503 35.6
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 2.2e-51 207.2 460 37.4
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 4.8e-51 206.1 397 40.3
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 5.3e-50 202.6 241 51.9
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 4.5e-49 199.5 327 45.6
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 4.0e-45 186.4 400 40.2
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 3.3e-44 183.3 388 39.7
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 1.7e-43 181.0 291 42.6
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 1.4e-42 177.9 241 48.5
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 1.1e-39 168.3 383 37.9
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 2.5e-39 167.2 359 37.9
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 1.6e-38 164.5 383 37.9
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 3.0e-37 160.2 362 39.5
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 3.7e-35 153.3 341 39.9
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 1.6e-33 147.9 363 36.6
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 4.5e-33 146.4 389 38.0
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 4.5e-33 146.4 389 38.0
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 1.3e-32 144.8 288 42.4
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 2.3e-29 134.0 341 34.9
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 3.1e-26 123.6 305 35.1
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 4.5e-25 119.8 404 34.9
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 2.5e-23 114.0 322 34.8
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 6.1e-22 109.4 255 39.2
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 2.3e-21 107.5 371 34.8
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 3.4e-20 103.6 374 31.8
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 5.7e-20 102.8 320 33.4
unitig_0.g2554 Utricularia gibba HOM05D005514 ORTHO05D006563 7.5e-20 102.4 326 35.6
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 4.1e-18 96.7 284 35.9
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 3.6e-14 83.6 110 48.2
MD15G1181500 Malus domestica HOM05D005514 ORTHO05D006563 4.7e-14 83.2 75 61.3
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 3.2e-10 70.5 153 38.6
COL.COLO4_34822 Corchorus olitorius HOM05D005514 ORTHO05D006563 1.2e-09 68.6 75 56.0
Lsat_1_v5_gn_5_102961 Lactuca sativa HOM05D005514 ORTHO05D006563 1.6e-09 68.2 67 64.2
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 2.7e-09 67.4 37 73.0
Cc06_g09940 Coffea canephora HOM05D005514 ORTHO05D006563 3.5e-09 67.0 72 55.6
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 1.0e-08 65.5 244 34.4
Oeu064594.1 Olea europaea HOM05D005514 ORTHO05D006563 1.3e-08 65.1 74 58.1
Lalb_Chr14g0371631 Lupinus albus HOM05D005514 ORTHO05D006563 1.2e-06 58.5 71 50.7
Lalb_Chr24g0397411 Lupinus albus HOM05D005514 ORTHO05D006563 3.6e-06 57.0 76 46.1
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 3.6e-06 57.0 43 60.5
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 8.1e-06 55.8 27 70.4


User provided reference genes

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