Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 0.0e+00 1323.1 721 100.0
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 1.6e-289 999.2 723 79.5
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 8.4e-278 960.3 722 75.8
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 1.1e-253 880.2 729 70.5
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 1.1e-250 870.2 728 71.3
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 2.6e-247 859.0 728 69.9
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 2.9e-246 855.5 662 75.7
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 3.8e-246 855.1 731 69.5
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 1.4e-245 853.2 732 69.3
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 2.7e-244 849.0 774 66.8
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 1.4e-243 846.7 729 68.9
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.3e-241 840.1 717 69.5
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 2.0e-239 832.8 729 69.0
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 3.4e-239 832.0 735 68.6
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 3.4e-239 832.0 730 68.1
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 7.2e-237 824.3 724 69.1
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.4e-235 820.1 727 66.7
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.3e-235 819.3 729 66.8
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 8.8e-235 817.4 724 67.8
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 2.6e-234 815.8 728 67.3
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.7e-234 814.7 737 67.0
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 9.7e-234 813.9 729 68.3
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 4.8e-233 811.6 717 67.8
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 4.1e-232 808.5 730 67.1
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 7.7e-231 804.3 729 66.3
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 5.0e-230 801.6 728 66.6
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.5e-229 799.3 735 65.9
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 4.2e-229 798.5 729 65.3
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.1e-226 790.4 752 65.6
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.7e-226 788.1 728 65.5
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.1e-224 781.9 727 65.2
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 5.9e-223 778.1 730 64.8
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 9.4e-221 770.8 627 71.9
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 2.7e-220 769.2 731 64.6
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 6.1e-220 768.1 755 63.0
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 6.3e-217 758.1 732 63.5
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 2.0e-215 753.1 633 70.3
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 7.2e-213 744.6 730 63.0
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 6.8e-211 738.0 722 62.6
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 1.2e-210 737.3 737 61.9
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 3.4e-210 735.7 727 62.7
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 9.8e-210 734.2 729 61.6
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 1.3e-209 733.8 733 62.3
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 1.7e-209 733.4 748 61.5
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 2.4e-208 729.6 746 61.8
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 1.0e-206 724.2 775 60.3
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 2.3e-206 723.0 723 62.7
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 2.9e-206 722.6 745 61.5
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 5.0e-206 721.8 726 61.2
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 1.9e-205 719.9 730 62.3
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 5.6e-205 718.4 723 61.3
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 7.3e-205 718.0 733 61.0
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 9.5e-205 717.6 732 61.5
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 1.2e-204 717.2 733 60.8
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 5.2e-203 711.8 726 61.3
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 8.3e-201 704.5 758 59.2
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.2e-199 700.7 730 59.0
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 2.7e-199 699.5 746 59.2
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.0e-198 697.6 752 60.5
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.3e-198 697.2 752 60.4
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 1.7e-198 696.8 718 61.3
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 1.1e-197 694.1 726 61.3
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 2.5e-197 693.0 752 60.1
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.8e-195 686.8 726 59.2
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 2.3e-195 686.4 738 58.8
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 4.0e-195 685.6 736 60.2
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 5.2e-195 685.3 762 58.9
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 8.9e-195 684.5 643 65.9
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 5.8e-194 681.8 758 57.4
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 2.2e-193 679.9 730 59.6
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 2.9e-193 679.5 741 58.4
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 3.7e-193 679.1 749 58.1
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 4.9e-193 678.7 745 58.1
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 8.3e-193 677.9 745 58.1
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 8.3e-193 677.9 736 59.4
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 1.6e-191 673.7 735 58.5
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 7.8e-191 671.4 756 58.6
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 7.8e-191 671.4 731 58.8
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 1.2e-188 664.1 756 57.1
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 3.1e-187 659.4 736 57.7
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 2.6e-186 656.4 734 57.2
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 5.8e-186 655.2 734 57.6
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 8.3e-185 651.4 761 56.5
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.7e-182 643.7 762 56.7
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 1.9e-181 640.2 780 54.6
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.6e-180 637.1 813 52.9
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 2.1e-180 636.7 746 56.0
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 2.2e-177 626.7 490 71.0
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 2.9e-177 626.3 737 55.1
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 2.7e-175 619.8 736 55.0
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 3.5e-175 619.4 739 55.5
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 5.1e-174 615.5 732 55.3
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 3.6e-172 609.4 733 54.7
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 8.1e-172 608.2 725 56.3
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 1.5e-170 604.0 771 52.7
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 3.8e-169 599.4 730 54.0
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 3.9e-166 589.3 734 54.5
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 4.8e-164 582.4 738 52.8
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 4.0e-163 579.3 778 52.1
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 9.0e-163 578.2 773 52.7
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 3.4e-162 576.2 744 52.2
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.3e-158 564.3 714 52.9
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 3.0e-158 563.1 738 52.0
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 4.0e-155 552.7 393 78.6
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 5.5e-152 542.3 758 49.7
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 3.7e-148 529.6 640 55.9
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 2.7e-135 486.9 532 58.5
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 5.9e-130 469.2 684 50.3
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 2.1e-127 460.7 462 62.6
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.7e-116 424.5 504 58.3
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.4e-115 421.4 504 58.1
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 1.6e-103 381.3 755 40.8
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.2e-97 360.9 240 81.7
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.9e-97 360.5 434 53.0
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 4.0e-94 350.1 239 82.0
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 5.0e-89 333.2 436 52.3
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 9.2e-83 312.4 446 49.1
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 1.7e-81 308.1 385 52.2
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.5e-80 305.1 223 76.2
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.5e-80 305.1 223 76.2
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 1.8e-78 298.1 206 78.6
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 2.0e-77 294.7 244 69.7
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 4.4e-77 293.5 244 70.5
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 2.0e-69 268.1 523 40.5
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.6e-63 248.4 185 76.2
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 4.0e-62 243.8 428 40.0
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 5.6e-56 223.4 136 86.8
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.7e-52 211.8 320 48.1
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 9.6e-48 196.1 415 39.0
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 4.6e-42 177.2 523 32.5
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 2.7e-34 151.4 219 50.7
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 1.1e-32 146.0 243 43.6
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 2.8e-31 141.4 92 79.3
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 9.0e-30 136.3 195 52.3
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 1.0e-25 122.9 99 73.7
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 1.9e-24 118.6 297 37.0
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 4.8e-23 114.0 225 41.3
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 8.5e-20 103.2 81 74.1
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 9.3e-19 99.8 83 72.3
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 9.3e-19 99.8 83 72.3
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 2.3e-17 95.1 85 67.1
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.5e-16 91.7 128 50.8
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 1.7e-12 79.0 463 26.8
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 2.9e-12 78.2 76 60.5
CDE02G3418 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 6.5e-12 77.0 308 30.5
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 2.5e-11 75.1 82 59.8
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 7.9e-10 70.1 70 58.6
CARHR266410 Cardamine hirsuta HOM05D004485 ORTHO05D005485 1.3e-07 62.8 123 43.1
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 1.7e-07 62.4 50 74.0
CDE05G2998 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 1.1e-06 59.7 357 26.1
BraA07t27870Z Brassica rapa HOM05D004485 ORTHO05D005485 1.4e-06 59.3 64 60.9
HanXRQChr03g0072061 Helianthus annuus HOM05D004485 ORTHO05D005485 6.9e-06 57.0 40 70.0
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 6.9e-06 57.0 366 23.5
arahy.Tifrunner.gnm1.ann1.G8QSGL Arachis hypogaea HOM05D004485 ORTHO05D005485 9.1e-06 56.6 66 53.0


User provided reference genes

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