Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G156900 Carya illinoinensis HOM05D002632 ORTHO05D002881 4.1e-43 177.6 84 100.0
CiPaw.02G055300 Carya illinoinensis HOM05D002632 ORTHO05D002881 3.2e-27 124.8 63 95.2
Cfa015140 Carpinus fangiana HOM05D002632 ORTHO05D002881 1.1e-24 116.3 63 87.3
CiPaw.01G101500 Carya illinoinensis HOM05D002632 ORTHO05D002881 2.8e-23 111.7 63 84.1
CANSAT78G1526 Cannabis sativa HOM05D002632 ORTHO05D002881 4.7e-23 110.9 62 85.5
QL10p048340 Quercus lobata HOM05D002632 ORTHO05D002881 8.1e-23 110.2 63 82.5
MELO3C017722.2 Cucumis melo HOM05D002632 ORTHO05D002881 1.1e-22 109.8 65 80.0
Sed0007052 Sechium edule HOM05D002632 ORTHO05D002881 1.1e-22 109.8 65 80.0
Atru.chr3.1538 Acer truncatum HOM05D002632 ORTHO05D002881 3.1e-22 108.2 63 79.4
Actinidia35969 Actinidia chinensis HOM05D002632 ORTHO05D002881 3.1e-22 108.2 63 81.0
COL.COLO4_24409 Corchorus olitorius HOM05D002632 ORTHO05D002881 3.1e-22 108.2 63 79.4
CsaV3_4G003290 Cucumis sativus L. HOM05D002632 ORTHO05D002881 5.2e-22 107.5 65 78.5
Duzib151G1124 Durio zibethinus HOM05D002632 ORTHO05D002881 5.2e-22 107.5 62 79.0
MBI11_g13789_MAGBIO Magnolia biondii HOM05D002632 ORTHO05D002881 5.2e-22 107.5 63 77.8
Thecc.04G185200 Theobroma cacao HOM05D002632 ORTHO05D002881 5.2e-22 107.5 63 77.8
Dinv22721 Davidia involucrata HOM05D002632 ORTHO05D002881 1.2e-21 106.3 63 77.8
MD04G1039600 Malus domestica HOM05D002632 ORTHO05D002881 1.2e-21 106.3 63 81.0
Eucgr.A00073 Eucalyptus grandis HOM05D002632 ORTHO05D002881 2.0e-21 105.5 65 78.5
Eucgr.A00269 Eucalyptus grandis HOM05D002632 ORTHO05D002881 2.0e-21 105.5 65 78.5
Rhsim06G0131800 Rhododendron simsii HOM05D002632 ORTHO05D002881 2.0e-21 105.5 63 77.8
Actinidia34609 Actinidia chinensis HOM05D002632 ORTHO05D002881 2.6e-21 105.1 63 77.8
MBI08_g22656_MAGBIO Magnolia biondii HOM05D002632 ORTHO05D002881 2.6e-21 105.1 69 72.5
GSVIVG01010745001 Vitis vinifera HOM05D002632 ORTHO05D002881 4.4e-21 104.4 63 79.4
RcHm_v2.0_Chr4g0407231 Rosa chinensis HOM05D002632 ORTHO05D002881 5.8e-21 104.0 63 77.8
Hma1.2p1_0324F.1_g125360 Hydrangea macrophylla HOM05D002632 ORTHO05D002881 9.9e-21 103.2 63 76.2
Gohir.D02G016600 Gossypium hirsutum HOM05D002632 ORTHO05D002881 1.3e-20 102.8 62 75.8
Gorai.005G020100 Gossypium raimondii HOM05D002632 ORTHO05D002881 1.3e-20 102.8 62 75.8
Duzib212G0697 Durio zibethinus HOM05D002632 ORTHO05D002881 1.7e-20 102.4 63 74.6
FAN17G1466 Fragaria x ananassa HOM05D002632 ORTHO05D002881 2.2e-20 102.1 63 76.2
FAN22G2005 Fragaria x ananassa HOM05D002632 ORTHO05D002881 2.2e-20 102.1 63 76.2
TWI63G0326 Tripterygium wilfordii HOM05D002632 ORTHO05D002881 2.2e-20 102.1 63 73.0
PGR083G0203 Punica granatum HOM05D002632 ORTHO05D002881 2.9e-20 101.7 63 73.0
CSS0013262 Camellia sinensis var. sinensis HOM05D002632 ORTHO05D002881 3.7e-20 101.3 63 76.2
Ciclev10020882m.g Citrus clementina HOM05D002632 ORTHO05D002881 3.7e-20 101.3 63 74.6
Gohir.A02G015100 Gossypium hirsutum HOM05D002632 ORTHO05D002881 4.9e-20 100.9 63 74.6
Sed0021868 Sechium edule HOM05D002632 ORTHO05D002881 4.9e-20 100.9 65 72.3
TAR362G0765 Trochodendron aralioides HOM05D002632 ORTHO05D002881 4.9e-20 100.9 63 76.2
Sabra17G0020200 Salix brachista HOM05D002632 ORTHO05D002881 6.4e-20 100.5 65 72.3
ATR0743G155 Amborella trichopoda HOM05D002632 ORTHO05D002881 8.3e-20 100.1 64 71.9
Manes.11G119500 Manihot esculenta HOM05D002632 ORTHO05D002881 8.3e-20 100.1 63 73.0
Manes.04G042200 Manihot esculenta HOM05D002632 ORTHO05D002881 1.9e-19 99.0 63 71.4
Gorai.011G146300 Gossypium raimondii HOM05D002632 ORTHO05D002881 2.4e-19 98.6 64 71.9
Gohir.D10G132600 Gossypium hirsutum HOM05D002632 ORTHO05D002881 4.1e-19 97.8 64 70.3
PSO017G2380 Papaver somniferum HOM05D002632 ORTHO05D002881 5.4e-19 97.4 63 71.4
PSO675G8628 Papaver somniferum HOM05D002632 ORTHO05D002881 5.4e-19 97.4 63 71.4
FvH4_4g11150 Fragaria vesca HOM05D002632 ORTHO05D002881 7.1e-19 97.1 63 73.0
Potri.017G031700 Populus trichocarpa HOM05D002632 ORTHO05D002881 1.2e-18 96.3 63 69.8
THA.LOC104803653 Tarenaya hassleriana HOM05D002632 ORTHO05D002881 1.6e-18 95.9 63 66.7
Gohir.A10G134000 Gossypium hirsutum HOM05D002632 ORTHO05D002881 2.7e-18 95.1 64 70.3
Cpa.g.sc238.1 Carica papaya HOM05D002632 ORTHO05D002881 3.5e-18 94.7 62 69.4
HPP92_023709 Vanilla planifolia HOM05D002632 ORTHO05D002881 4.6e-18 94.4 65 66.2
ClCG07G015590 Citrullus lanatus HOM05D002632 ORTHO05D002881 1.0e-17 93.2 65 72.3
Lj3A205T32 Lonicera japonica HOM05D002632 ORTHO05D002881 1.7e-17 92.4 64 70.3
Peaxi162Scf00375g00423 Petunia axillaris HOM05D002632 ORTHO05D002881 2.3e-17 92.0 82 58.5
TAR633G1603 Trochodendron aralioides HOM05D002632 ORTHO05D002881 2.3e-17 92.0 66 66.7
Os04g0492400 Oryza sativa ssp. japonica HOM05D002632 ORTHO05D002881 3.0e-17 91.7 65 66.2
DCAR_029923 Daucus carota HOM05D002632 ORTHO05D002881 5.1e-17 90.9 63 65.1
Potri.007G127300 Populus trichocarpa HOM05D002632 ORTHO05D002881 5.1e-17 90.9 63 68.3
Sabra07G0103300 Salix brachista HOM05D002632 ORTHO05D002881 5.1e-17 90.9 63 68.3
CAN.G65.179 Capsicum annuum HOM05D002632 ORTHO05D002881 1.9e-16 89.0 63 65.1
Sopen06g029760 Solanum pennellii HOM05D002632 ORTHO05D002881 2.5e-16 88.6 63 68.3
Zm00001eb078810 Zea mays HOM05D002632 ORTHO05D002881 3.3e-16 88.2 65 66.2
Nn1g09573 Nelumbo nucifera HOM05D002632 ORTHO05D002881 5.6e-16 87.4 64 67.2
PGSC0003DMG400026907 Solanum tuberosum HOM05D002632 ORTHO05D002881 7.3e-16 87.0 63 68.3
Zm00001eb425580 Zea mays HOM05D002632 ORTHO05D002881 9.5e-16 86.7 71 59.2
Solyc06g073380.3 Solanum lycopersicum HOM05D002632 ORTHO05D002881 1.2e-15 86.3 63 66.7
THA.LOC104799618 Tarenaya hassleriana HOM05D002632 ORTHO05D002881 6.2e-15 84.0 62 61.3
HanXRQChr07g0186081 Helianthus annuus HOM05D002632 ORTHO05D002881 1.1e-14 83.2 64 59.4
ECA248G1343 Erigeron canadensis HOM05D002632 ORTHO05D002881 3.1e-14 81.6 62 58.1
Sp4g25420 Schrenkiella parvula HOM05D002632 ORTHO05D002881 8.9e-14 80.1 63 58.7
A04p32660 Brassica napus HOM05D002632 ORTHO05D002881 1.2e-13 79.7 63 60.3
CARHR138390 Cardamine hirsuta HOM05D002632 ORTHO05D002881 1.2e-13 79.7 63 61.9
Lsat_1_v5_gn_6_57241 Lactuca sativa HOM05D002632 ORTHO05D002881 1.2e-13 79.7 64 56.2
Haze_01535 Corylus avellana HOM05D002632 ORTHO05D002881 1.5e-13 79.3 148 37.2
Thhalv10001523m.g Eutrema salsugineum HOM05D002632 ORTHO05D002881 1.5e-13 79.3 63 58.7
AT2G43320 Arabidopsis thaliana HOM05D002632 ORTHO05D002881 2.6e-13 78.6 63 58.7
BcaB06g29302 Brassica carinata HOM05D002632 ORTHO05D002881 2.6e-13 78.6 63 57.1
BcaC02g07189 Brassica carinata HOM05D002632 ORTHO05D002881 2.6e-13 78.6 63 58.7
C04p70350 Brassica napus HOM05D002632 ORTHO05D002881 2.6e-13 78.6 63 58.7
BolC4t28538H Brassica oleracea HOM05D002632 ORTHO05D002881 2.6e-13 78.6 63 58.7
Carub.0004s2578 Capsella rubella HOM05D002632 ORTHO05D002881 2.6e-13 78.6 63 57.1
BcaB01g03394 Brassica carinata HOM05D002632 ORTHO05D002881 3.4e-13 78.2 71 52.1
BcaC01g05242 Brassica carinata HOM05D002632 ORTHO05D002881 3.4e-13 78.2 73 52.1
A03p24180 Brassica napus HOM05D002632 ORTHO05D002881 3.4e-13 78.2 73 52.1
BraA04t18729Z Brassica rapa HOM05D002632 ORTHO05D002881 3.4e-13 78.2 63 58.7
ECA233G3092 Erigeron canadensis HOM05D002632 ORTHO05D002881 3.4e-13 78.2 62 54.8
C03p28810 Brassica napus HOM05D002632 ORTHO05D002881 5.8e-13 77.4 73 50.7
BolC3t15240H Brassica oleracea HOM05D002632 ORTHO05D002881 5.8e-13 77.4 73 50.7
BraA03t11627Z Brassica rapa HOM05D002632 ORTHO05D002881 5.8e-13 77.4 71 52.1
CDE09G1176 Ceratophyllum demersum HOM05D002632 ORTHO05D002881 7.6e-13 77.0 60 61.7
Nitab4.5_0005570g0010 Nicotiana tabacum HOM05D002632 ORTHO05D002881 9.9e-13 76.6 63 63.5
Glyma.15G030800 Glycine max HOM05D002632 ORTHO05D002881 2.2e-12 75.5 63 60.3
HanXRQChr05g0160041 Helianthus annuus HOM05D002632 ORTHO05D002881 2.9e-12 75.1 61 59.0
Hund03148 Selenicereus undatus HOM05D002632 ORTHO05D002881 3.8e-12 74.7 63 57.1
Os09g0514300 Oryza sativa ssp. japonica HOM05D002632 ORTHO05D002881 1.1e-11 73.2 63 49.2
VMungo1080G1829 Vigna mungo HOM05D002632 ORTHO05D002881 1.1e-11 73.2 63 58.7
CDE02G3293 Ceratophyllum demersum HOM05D002632 ORTHO05D002881 1.4e-11 72.8 62 56.5
Glyma.13G343500 Glycine max HOM05D002632 ORTHO05D002881 1.4e-11 72.8 63 57.1
Aqoxy2G04095 Aquilegia oxysepala HOM05D002632 ORTHO05D002881 5.4e-11 70.9 57 61.4
arahy.Tifrunner.gnm1.ann1.181MCE Arachis hypogaea HOM05D002632 ORTHO05D002881 5.4e-11 70.9 63 55.6
EL10Ac3g05586 Beta vulgaris HOM05D002632 ORTHO05D002881 9.2e-11 70.1 62 50.0
Phvul.005G152300 Phaseolus vulgaris HOM05D002632 ORTHO05D002881 9.2e-11 70.1 63 57.1
arahy.Tifrunner.gnm1.ann1.BKEZ4L Arachis hypogaea HOM05D002632 ORTHO05D002881 1.2e-10 69.7 63 55.6
Psat1g007280 Pisum sativum HOM05D002632 ORTHO05D002881 2.1e-10 68.9 63 58.7
Lsat_1_v5_gn_1_69340 Lactuca sativa HOM05D002632 ORTHO05D002881 2.7e-10 68.6 61 54.1
TPR.G18845 Trifolium pratense HOM05D002632 ORTHO05D002881 7.8e-10 67.0 63 60.3
Medtr2g098630 Medicago truncatula HOM05D002632 ORTHO05D002881 3.9e-09 64.7 63 57.1
Lj3g0008333 Lotus japonicus HOM05D002632 ORTHO05D002881 6.6e-09 63.9 59 57.6
Ca_01265_v3 Cicer arietinum L. HOM05D002632 ORTHO05D002881 1.1e-08 63.2 63 57.1
vmacro12503 Vaccinium macrocarpon HOM05D002632 ORTHO05D002881 1.1e-08 63.2 142 31.7
AUR62002286 Chenopodium quinoa HOM05D002632 ORTHO05D002881 4.3e-08 61.2 72 44.4
Aa31LG1G25100 Aethionema arabicum HOM05D002632 ORTHO05D002881 7.3e-08 60.5 89 40.4
Lalb_Chr14g0372431 Lupinus albus HOM05D002632 ORTHO05D002881 4.7e-07 57.8 63 49.2
AUR62015409 Chenopodium quinoa HOM05D002632 ORTHO05D002881 8.1e-07 57.0 72 43.1
Nitab4.5_0003132g0080 Nicotiana tabacum HOM05D002632 ORTHO05D002881 3.1e-06 55.1 63 50.8


User provided reference genes

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