Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.2e-38 162.5 76 100.0
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 3.2e-34 147.9 76 92.1
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.0e-33 145.2 76 92.1
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.0e-33 145.2 76 90.8
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.2e-22 109.4 73 72.6
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 2.6e-20 101.7 72 69.4
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 1.7e-19 99.0 74 63.5
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 4.9e-19 97.4 70 64.3
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 4.9e-19 97.4 76 64.5
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 8.3e-19 96.7 69 68.1
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 4.1e-18 94.4 70 60.0
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 7.1e-18 93.6 73 61.6
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 7.1e-18 93.6 69 65.2
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 7.1e-18 93.6 73 63.0
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 9.2e-18 93.2 70 62.9
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.2e-17 92.8 70 62.9
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 2.7e-17 91.7 73 64.4
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 2.7e-17 91.7 71 64.8
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 2.7e-17 91.7 73 58.9
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 4.6e-17 90.9 78 57.7
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 7.8e-17 90.1 72 58.3
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 7.8e-17 90.1 76 55.3
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 7.8e-17 90.1 68 63.2
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.7e-16 89.0 73 58.9
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.7e-16 89.0 73 58.9
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.3e-16 88.6 73 58.9
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 3.0e-16 88.2 72 56.9
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 3.9e-16 87.8 72 58.3
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 6.6e-16 87.0 68 61.8
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 8.6e-16 86.7 74 56.8
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 8.6e-16 86.7 71 57.7
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 8.6e-16 86.7 72 62.5
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 1.5e-15 85.9 65 61.5
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 1.9e-15 85.5 72 59.7
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 2.5e-15 85.1 68 63.2
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 4.3e-15 84.3 74 55.4
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 5.6e-15 84.0 74 56.8
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 1.2e-14 82.8 72 59.7
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 2.8e-14 81.6 69 53.6
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 2.8e-14 81.6 74 56.8
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 3.6e-14 81.3 61 59.0
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 4.7e-14 80.9 68 58.8
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 4.7e-14 80.9 73 54.8
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 8.1e-14 80.1 68 54.4
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 1.1e-13 79.7 73 60.3
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 1.4e-13 79.3 75 56.0
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 2.4e-13 78.6 68 58.8
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 3.1e-13 78.2 51 66.7
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 3.1e-13 78.2 73 53.4
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 4.0e-13 77.8 67 61.2
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 6.8e-13 77.0 60 56.7
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 8.9e-13 76.6 72 61.1
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 8.9e-13 76.6 70 57.1
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 8.9e-13 76.6 62 58.1
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 8.9e-13 76.6 67 59.7
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 1.2e-12 76.3 75 52.0
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.2e-12 76.3 67 58.2
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 1.5e-12 75.9 76 50.0
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 1.5e-12 75.9 62 56.5
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 2.0e-12 75.5 70 58.6
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.0e-12 75.5 58 58.6
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 4.4e-12 74.3 68 55.9
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 4.4e-12 74.3 77 50.6
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 5.8e-12 73.9 77 50.6
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 7.6e-12 73.6 74 54.1
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 7.6e-12 73.6 72 52.8
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 9.9e-12 73.2 77 57.1
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.3e-11 72.8 73 56.2
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.7e-11 72.4 73 56.2
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.7e-11 72.4 73 50.7
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.2e-11 72.0 73 56.2
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 2.2e-11 72.0 76 47.4
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 4.9e-11 70.9 71 56.3
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 4.9e-11 70.9 71 56.3
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 4.9e-11 70.9 62 59.7
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 8.4e-11 70.1 72 48.6
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 8.4e-11 70.1 66 48.5
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 8.4e-11 70.1 66 48.5
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 8.4e-11 70.1 68 45.6
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 1.4e-10 69.3 65 58.5
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.4e-10 69.3 71 54.9
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 1.4e-10 69.3 66 53.0
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 1.9e-10 68.9 76 51.3
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 2.4e-10 68.6 73 50.7
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 2.4e-10 68.6 65 56.9
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 3.2e-10 68.2 68 51.5
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 3.2e-10 68.2 75 49.3
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 3.2e-10 68.2 68 48.5
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 3.2e-10 68.2 72 50.0
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 4.1e-10 67.8 70 52.9
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 4.1e-10 67.8 71 45.1
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 5.4e-10 67.4 71 54.9
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 7.1e-10 67.0 69 50.7
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 7.1e-10 67.0 50 62.0
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 9.2e-10 66.6 71 53.5
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 9.2e-10 66.6 68 50.0
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 9.2e-10 66.6 56 53.6
Lj1g0008863 Lotus japonicus HOM05D004288 ORTHO05D004997 1.2e-09 66.2 68 51.5
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 1.2e-09 66.2 74 45.9
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 2.1e-09 65.5 68 51.5
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 2.7e-09 65.1 63 54.0
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 3.5e-09 64.7 41 68.3
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 3.5e-09 64.7 71 50.7
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 4.6e-09 64.3 68 48.5
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 1.0e-08 63.2 50 60.0
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 1.0e-08 63.2 67 52.2
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 1.0e-08 63.2 63 46.0
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 1.0e-08 63.2 70 50.0
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 1.3e-08 62.8 55 52.7
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 1.3e-08 62.8 61 44.3
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 1.7e-08 62.4 71 52.1
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 1.7e-08 62.4 44 65.9
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 2.3e-08 62.0 66 48.5
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 3.9e-08 61.2 49 55.1
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 3.9e-08 61.2 50 58.0
Oeu059079.1 Olea europaea HOM05D004288 ORTHO05D004997 3.9e-08 61.2 76 48.7
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 5.1e-08 60.8 68 50.0
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 5.1e-08 60.8 68 50.0
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 5.1e-08 60.8 69 50.7
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 6.6e-08 60.5 61 49.2
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 6.6e-08 60.5 65 49.2
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 8.7e-08 60.1 49 53.1
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 8.7e-08 60.1 75 42.7
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 1.1e-07 59.7 79 44.3
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 1.9e-07 58.9 51 54.9
CDE04G1843 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 1.9e-07 58.9 69 40.6
AUR62024064 Chenopodium quinoa HOM05D004288 ORTHO05D004997 3.3e-07 58.2 66 53.0
SGA_v2.0_scaffold238G43969 Striga asiatica HOM05D004288 ORTHO05D004997 5.6e-07 57.4 56 50.0
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 5.6e-07 57.4 61 47.5
DCAR_020077 Daucus carota HOM05D004288 ORTHO05D004997 9.6e-07 56.6 37 64.9
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 9.6e-07 56.6 39 64.1
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 1.2e-06 56.2 54 51.9
ECA246G3669 Erigeron canadensis HOM05D002841 ORTHO05D003158 1.6e-06 55.8 57 47.4
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 1.6e-06 55.8 53 50.9
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 1.6e-06 55.8 68 41.2
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 2.1e-06 55.5 71 46.5
Potri.009G089900 Populus trichocarpa HOM05D004288 ORTHO05D004997 2.1e-06 55.5 73 38.4
AUR62029595 Chenopodium quinoa HOM05D004288 ORTHO05D004997 2.8e-06 55.1 65 52.3
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 2.8e-06 55.1 61 50.8
Nn5g30537 Nelumbo nucifera HOM05D004288 ORTHO05D004997 2.8e-06 55.1 100 33.0
VMungo0647G1883 Vigna mungo HOM05D004288 ORTHO05D004997 4.7e-06 54.3 65 46.2
HPP92_013399 Vanilla planifolia HOM05D059585 ORTHO05D004997 6.2e-06 53.9 46 52.2


User provided reference genes

Program Settings