Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 4.5e-300 1033.9 539 100.0
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 1.1e-208 730.3 537 73.4
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 4.3e-202 708.4 543 70.7
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 2.7e-172 609.4 541 60.3
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 8.2e-169 597.8 441 72.8
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 1.4e-152 543.9 533 56.1
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 7.2e-149 531.6 556 54.9
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 1.2e-143 514.2 536 56.0
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 2.6e-143 513.1 534 52.6
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.1e-141 507.7 544 52.8
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 9.4e-141 504.6 524 51.7
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 4.0e-139 499.2 552 50.9
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 7.5e-138 495.0 520 54.0
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 7.5e-138 495.0 546 53.3
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 8.3e-137 491.5 540 51.5
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.1e-136 491.1 554 51.3
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 4.1e-136 489.2 553 50.6
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.0e-134 484.6 546 51.5
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.0e-134 484.6 546 51.5
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 1.8e-131 473.8 527 51.6
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 5.2e-131 472.2 538 48.9
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 3.1e-128 463.0 527 49.5
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 1.2e-127 461.1 521 51.1
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.6e-127 460.7 529 51.0
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 7.7e-127 458.4 518 51.2
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 3.3e-125 453.0 522 51.0
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 7.2e-125 451.8 514 52.1
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.3e-123 446.8 618 44.7
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 7.5e-122 441.8 520 50.2
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 2.8e-121 439.9 488 52.3
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 3.7e-121 439.5 558 47.0
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 2.4e-120 436.8 675 41.3
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 4.1e-120 436.0 465 52.3
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.0e-119 433.7 471 51.6
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 4.5e-119 432.6 644 42.9
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 1.0e-118 431.4 534 48.5
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 3.9e-118 429.5 520 49.8
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.9e-117 427.2 536 47.2
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 9.5e-117 424.9 541 46.4
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 2.1e-116 423.7 525 46.9
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.1e-116 423.7 485 49.9
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.8e-116 423.3 535 47.1
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 6.1e-116 422.2 525 46.7
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 2.3e-115 420.2 519 48.2
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.2e-112 409.8 516 47.1
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 1.2e-111 407.9 522 47.3
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 2.1e-108 397.1 530 46.4
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 2.6e-106 390.2 507 44.0
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 5.8e-106 389.0 536 44.6
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.1e-104 384.8 524 43.7
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 5.4e-104 382.5 522 43.3
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 1.3e-102 377.9 534 44.4
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 3.0e-102 376.7 539 43.0
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 5.6e-101 372.5 485 46.0
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.4e-99 367.9 537 43.2
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 2.3e-99 367.1 540 42.2
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.1e-96 358.2 537 41.0
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 1.5e-93 347.8 514 40.3
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 2.0e-90 337.4 528 41.1
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 4.9e-89 332.8 523 41.7
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 7.1e-88 328.9 521 40.5
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 1.5e-85 321.2 532 40.0
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.9e-85 320.9 502 41.2
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 3.1e-83 313.5 530 37.5
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 5.3e-83 312.8 524 38.5
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.5e-82 311.2 524 38.5
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 4.4e-82 309.7 516 40.9
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 7.6e-82 308.9 531 38.6
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 3.2e-80 303.5 534 39.0
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.3e-78 298.1 510 37.8
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 2.5e-77 293.9 528 37.5
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.1e-76 290.8 501 39.9
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 6.2e-76 289.3 481 39.5
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 6.9e-75 285.8 520 36.2
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.2e-74 285.0 517 37.5
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 2.6e-74 283.9 283 54.1
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.4e-74 283.5 546 36.4
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 5.8e-74 282.7 432 41.2
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 1.3e-73 281.6 266 56.0
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 2.2e-73 280.8 266 56.0
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 3.8e-73 280.0 497 38.0
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 6.4e-73 279.3 500 38.8
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 1.9e-72 277.7 544 36.0
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.2e-72 276.9 489 37.0
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 4.2e-72 276.6 485 38.4
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.6e-71 274.6 486 36.8
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 1.6e-71 274.6 490 36.5
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 1.8e-70 271.2 528 36.9
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 3.3e-69 266.9 541 35.9
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 4.3e-69 266.5 485 38.6
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 2.1e-68 264.2 522 34.9
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 4.8e-68 263.1 282 51.4
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 8.1e-68 262.3 516 34.7
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.8e-67 261.2 499 34.3
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 1.8e-67 261.2 518 35.3
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 7.6e-66 255.8 505 35.2
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.3e-65 255.0 500 35.0
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 2.2e-65 254.2 517 35.4
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.2e-65 254.2 381 40.9
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 3.8e-65 253.4 512 34.4
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.9e-65 253.1 258 55.8
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 1.1e-64 251.9 384 39.3
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 1.2e-63 248.4 527 35.3
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 1.6e-63 248.1 381 39.1
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 2.1e-63 247.7 527 35.3
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.1e-63 247.7 450 37.8
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 7.9e-63 245.7 535 33.6
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.3e-62 245.0 415 37.6
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 8.7e-62 242.3 529 34.8
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 1.1e-61 241.9 504 33.9
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 1.9e-61 241.1 292 47.3
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 1.3e-60 238.4 529 34.6
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 2.1e-60 237.7 515 32.8
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 8.2e-60 235.7 495 33.7
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 8.2e-60 235.7 269 51.3
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.8e-59 234.6 508 34.3
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.8e-59 234.6 508 34.3
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 5.3e-59 233.0 559 33.1
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 4.5e-58 229.9 282 44.3
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 7.6e-58 229.2 510 35.3
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 1.0e-57 228.8 518 32.4
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 1.1e-56 225.3 575 32.5
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 1.1e-56 225.3 405 34.6
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 1.9e-56 224.6 492 35.8
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 3.2e-56 223.8 472 33.9
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 5.5e-56 223.0 433 35.3
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.2e-55 221.9 241 49.8
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 1.2e-55 221.9 251 48.2
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 2.1e-55 221.1 562 30.4
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 2.3e-54 217.6 521 32.6
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 2.3e-54 217.6 526 31.6
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 2.3e-54 217.6 295 41.0
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 4.5e-50 203.4 504 31.5
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 5.0e-49 199.9 408 33.1
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 1.4e-48 198.4 514 32.9
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.1e-47 194.5 488 31.1
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 1.4e-46 191.8 529 30.6
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 3.0e-46 190.7 256 46.9
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 3.9e-46 190.3 270 44.4
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.5e-45 188.3 562 30.1
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 1.3e-44 185.3 433 31.4
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 2.2e-44 184.5 396 33.3
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 2.8e-44 184.1 472 31.1
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 4.8e-44 183.3 536 30.8
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 1.1e-43 182.2 275 40.7
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 4.1e-43 180.3 502 30.5
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 2.2e-41 174.5 258 42.2
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 2.9e-41 174.1 494 31.4
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 6.5e-41 172.9 298 39.3
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 4.2e-40 170.2 512 28.7
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 6.1e-39 166.4 527 28.1
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 7.9e-39 166.0 536 28.0
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 1.0e-38 165.6 483 31.3
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 3.0e-38 164.1 447 29.1
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 1.5e-37 161.8 446 29.1
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 5.3e-35 153.3 256 38.7
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 7.7e-34 149.4 196 45.9
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 4.2e-32 143.7 157 49.0
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 1.7e-28 131.7 269 36.8
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.1e-27 129.0 245 37.6
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 3.1e-27 127.5 276 29.3
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.1e-27 127.1 254 35.0
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 5.3e-27 126.7 278 33.1
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 2.6e-26 124.4 490 27.1
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 1.1e-24 119.0 162 42.6
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.6e-23 115.2 237 35.0
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 4.7e-23 113.6 200 39.0
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 4.4e-21 107.1 201 35.8
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 4.1e-19 100.5 117 42.7
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 4.1e-19 100.5 128 43.8
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 2.9e-17 94.4 255 28.6
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 5.0e-17 93.6 293 29.7
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 4.7e-15 87.0 142 38.7
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 2.2e-12 78.2 140 37.9
AagrBONN_evm.TU.Sc2ySwM_344.1097 Anthoceros agrestis HOM05D003538 ORTHO05D004376 5.4e-11 73.6 478 23.2
TPR.G21889 Trifolium pratense HOM05D003538 ORTHO05D004376 2.7e-10 71.2 121 44.6


User provided reference genes

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