Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 9.1e-106 387.1 224 100.0
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 6.2e-62 241.5 226 60.2
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 1.3e-56 223.8 179 62.0
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 9.6e-55 217.6 248 52.4
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 2.4e-53 213.0 155 65.8
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.5e-52 210.3 121 82.6
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 2.0e-52 209.9 126 77.0
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 4.9e-51 205.3 132 69.7
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 7.1e-50 201.4 127 72.4
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 7.8e-49 198.0 127 70.1
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 1.7e-48 196.8 175 61.7
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 5.1e-48 195.3 168 56.0
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 1.5e-47 193.7 121 73.6
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 2.5e-47 193.0 144 66.0
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 3.3e-47 192.6 261 52.9
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 5.6e-47 191.8 230 49.6
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 7.3e-47 191.4 134 69.4
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 9.6e-47 191.0 126 69.0
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 3.6e-46 189.1 230 45.2
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.4e-45 187.2 217 47.9
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.8e-45 186.8 113 72.6
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.8e-45 186.8 113 72.6
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 6.9e-45 184.9 121 70.2
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.5e-44 183.7 117 70.1
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 2.0e-44 183.3 127 67.7
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 2.0e-44 183.3 122 71.3
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 2.6e-44 183.0 170 59.4
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 4.4e-44 182.2 133 66.2
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 5.8e-44 181.8 115 69.6
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 2.9e-43 179.5 175 54.3
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 4.9e-43 178.7 143 60.8
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 6.4e-43 178.3 194 55.7
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.1e-42 177.6 235 48.1
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.1e-42 177.6 235 48.1
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 1.1e-42 177.6 175 53.7
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 1.4e-42 177.2 116 70.7
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 3.2e-42 176.0 188 48.9
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 4.2e-42 175.6 129 65.1
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 2.7e-41 172.9 176 58.0
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 2.7e-41 172.9 187 51.3
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 3.5e-41 172.6 131 62.6
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 4.6e-41 172.2 227 54.2
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 7.9e-41 171.4 113 67.3
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 3.9e-40 169.1 91 87.9
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 3.9e-40 169.1 126 61.9
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 5.1e-40 168.7 112 65.2
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 8.7e-40 167.9 119 66.4
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 1.5e-39 167.2 131 60.3
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 3.3e-39 166.0 116 66.4
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 7.4e-39 164.9 121 61.2
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 1.3e-38 164.1 131 58.0
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 1.3e-38 164.1 131 58.0
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.3e-38 164.1 121 66.1
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 2.1e-38 163.3 118 64.4
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 2.1e-38 163.3 118 64.4
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 2.1e-38 163.3 223 51.6
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 2.1e-38 163.3 148 54.7
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 6.2e-38 161.8 109 65.1
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 1.4e-37 160.6 125 58.4
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 4.0e-37 159.1 94 76.6
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 1.2e-36 157.5 97 72.2
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 2.6e-36 156.4 85 78.8
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 4.5e-36 155.6 164 58.5
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 4.5e-36 155.6 164 58.5
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 4.5e-36 155.6 136 58.1
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 5.8e-36 155.2 109 64.2
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 9.9e-36 154.5 101 74.3
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 9.9e-36 154.5 200 48.0
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.9e-35 152.1 224 49.1
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.9e-35 152.1 132 56.8
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.9e-35 152.1 198 50.0
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 6.4e-35 151.8 126 59.5
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 6.4e-35 151.8 127 59.8
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 1.1e-34 151.0 198 48.0
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 3.2e-34 149.4 155 52.3
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 3.2e-34 149.4 89 76.4
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 7.1e-34 148.3 225 48.0
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 1.2e-33 147.5 173 47.4
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 1.2e-33 147.5 172 48.8
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 2.1e-33 146.7 117 59.8
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 2.7e-33 146.4 215 47.0
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 2.7e-33 146.4 225 49.3
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 3.5e-33 146.0 92 69.6
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.6e-33 145.6 86 75.6
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 7.9e-33 144.8 100 63.0
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.0e-32 144.4 87 74.7
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 1.8e-32 143.7 89 71.9
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 1.1e-31 141.0 121 55.4
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.5e-31 140.6 194 42.8
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 7.4e-31 138.3 116 54.3
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 7.4e-31 138.3 167 51.5
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.3e-30 137.5 97 64.9
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 4.8e-30 135.6 89 67.4
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 2.4e-29 133.3 85 69.4
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 1.5e-28 130.6 90 65.6
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 3.4e-28 129.4 115 52.2
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 7.6e-28 128.3 78 79.5
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 2.2e-27 126.7 194 44.8
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 8.4e-27 124.8 86 70.9
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 2.5e-26 123.2 224 43.3
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 4.2e-26 122.5 75 78.7
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 4.2e-26 122.5 87 64.4
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 4.2e-26 122.5 79 72.2
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 9.3e-26 121.3 87 63.2
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 9.3e-26 121.3 79 73.4
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 2.7e-25 119.8 134 47.0
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 3.5e-25 119.4 136 48.5
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 2.3e-24 116.7 89 62.9
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 8.7e-24 114.8 65 78.5
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 2.5e-23 113.2 102 60.8
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 6.3e-22 108.6 127 44.1
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.4e-21 106.7 140 42.9
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 3.1e-21 106.3 77 66.2
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 5.3e-21 105.5 85 51.8
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.6e-20 103.2 61 78.7
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 4.5e-20 102.4 111 45.0
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 2.9e-19 99.8 90 51.1
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 2.9e-19 99.8 62 72.6
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 5.0e-19 99.0 132 40.2
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 8.5e-19 98.2 95 51.6
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 8.5e-19 98.2 95 51.6
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 8.5e-19 98.2 69 69.6
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 3.2e-18 96.3 63 73.0
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.2e-18 96.3 57 78.9
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 3.2e-18 96.3 136 47.8
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.2e-17 94.4 91 50.5
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 3.6e-17 92.8 88 54.5
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 7.9e-17 91.7 150 38.7
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 7.9e-17 91.7 115 44.3
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 7.9e-17 91.7 65 66.2
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 1.3e-16 90.9 111 44.1
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.8e-16 90.5 84 51.2
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 1.1e-15 87.8 63 73.0
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 1.5e-15 87.4 52 82.7
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 1.9e-15 87.0 67 65.7
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 1.9e-15 87.0 60 65.0
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 7.4e-15 85.1 125 40.8
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.3e-14 84.3 60 66.7
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 1.6e-14 84.0 160 36.2
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 2.8e-14 83.2 96 49.0
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 3.1e-13 79.7 47 76.6
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 5.3e-13 79.0 178 33.7
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 6.9e-13 78.6 45 80.0
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 9.0e-13 78.2 73 46.6
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.5e-12 77.4 46 82.6
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 1.5e-12 77.4 179 35.2
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.5e-12 77.4 47 78.7
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 2.6e-12 76.6 72 52.8
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 2.6e-12 76.6 46 80.4
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 3.4e-12 76.3 45 82.2
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 5.9e-12 75.5 42 85.7
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 1.0e-11 74.7 66 54.5
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 1.0e-11 74.7 61 63.9
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 1.3e-11 74.3 83 48.2
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 1.3e-11 74.3 41 80.5
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 1.7e-11 73.9 126 39.7
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 2.9e-11 73.2 65 53.8
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 5.0e-11 72.4 38 84.2
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 6.5e-11 72.0 51 68.6
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 6.5e-11 72.0 186 37.6
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 6.5e-11 72.0 137 40.1
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 1.1e-10 71.2 44 77.3
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.1e-10 71.2 39 84.6
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.4e-10 70.9 126 33.3
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 3.2e-10 69.7 50 56.0
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 9.4e-10 68.2 63 57.1
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 4.6e-09 65.9 45 73.3
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 1.1e-07 61.2 60 55.0
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 5.7e-07 58.9 95 34.7
BNapus_Darmor_BZH_scaffold_38p01430 Brassica napus HOM05D003803 ORTHO05D004456 7.4e-07 58.5 56 44.6
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 9.7e-07 58.2 37 73.0
THA.LOC104808881 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.7e-06 57.4 50 58.0
Medtr4g125015 Medicago truncatula HOM05D003803 ORTHO05D004456 2.2e-06 57.0 27 96.3
Thhalv10021823m.g Eutrema salsugineum HOM05D002369 ORTHO05D002435 4.8e-06 55.8 55 45.5


User provided reference genes

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