Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G139200 Carya illinoinensis HOM05D006911 ORTHO05D006663 4.6e-32 140.6 70 100.0
Cfa023065 Carpinus fangiana HOM05D006911 ORTHO05D006663 1.2e-19 99.4 68 75.0
Haze_13522 Corylus avellana HOM05D006911 ORTHO05D006663 1.2e-19 99.4 68 75.0
QL08p044828 Quercus lobata HOM05D006911 ORTHO05D006663 6.5e-18 93.6 66 69.7
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 1.4e-17 92.4 66 66.7
Manes.07G101802 Manihot esculenta HOM05D006911 ORTHO05D006663 4.2e-17 90.9 67 67.2
MD17G1137200 Malus domestica HOM05D006911 ORTHO05D006663 1.0e-15 86.3 66 69.7
Medtr5g091310 Medicago truncatula HOM05D006911 ORTHO05D006663 6.7e-15 83.6 71 64.8
Prupe.3G175200 Prunus persica HOM05D006911 ORTHO05D006663 6.7e-15 83.6 67 67.2
COL.COLO4_07174 Corchorus olitorius HOM05D006911 ORTHO05D006663 1.5e-14 82.4 67 62.7
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 1.5e-14 82.4 68 61.8
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 1.5e-14 82.4 68 61.8
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 1.5e-14 82.4 68 61.8
Duzib133G0070 Durio zibethinus HOM05D006911 ORTHO05D006663 2.0e-14 82.0 66 63.6
RcHm_v2.0_Chr2g0151771 Rosa chinensis HOM05D006911 ORTHO05D006663 2.6e-14 81.6 68 61.8
MD09G1150000 Malus domestica HOM05D006911 ORTHO05D006663 4.4e-14 80.9 66 63.6
Potri.005G203800 Populus trichocarpa HOM05D006911 ORTHO05D006663 2.2e-13 78.6 69 56.5
Phvul.006G031600 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 3.7e-13 77.8 69 59.4
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 6.3e-13 77.0 67 62.7
CSS0014266 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 1.8e-12 75.5 71 60.6
CSS0033096 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 1.8e-12 75.5 71 60.6
Nn3g20669 Nelumbo nucifera HOM05D006911 ORTHO05D006663 2.4e-12 75.1 72 58.3
Glyma.08G308500 Glycine max HOM05D006911 ORTHO05D006663 5.3e-12 73.9 71 60.6
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 5.3e-12 73.9 67 59.7
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 5.3e-12 73.9 71 52.1
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 9.1e-12 73.2 71 52.1
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 1.2e-11 72.8 67 59.7
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 1.6e-11 72.4 67 53.7
Cpa.g.sc50.102 Carica papaya HOM05D006911 ORTHO05D006663 2.6e-11 71.6 66 56.1
Potri.002G058400 Populus trichocarpa HOM05D006911 ORTHO05D006663 5.9e-11 70.5 69 53.6
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 5.9e-11 70.5 53 67.9
arahy.Tifrunner.gnm1.ann1.A53T08 Arachis hypogaea HOM05D006911 ORTHO05D006663 7.7e-11 70.1 72 62.5
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 7.7e-11 70.1 67 56.7
Gohir.D11G163600 Gossypium hirsutum HOM05D006911 ORTHO05D006663 7.7e-11 70.1 67 55.2
Gorai.007G174300 Gossypium raimondii HOM05D006911 ORTHO05D006663 7.7e-11 70.1 67 55.2
arahy.Tifrunner.gnm1.ann1.M9VZ51 Arachis hypogaea HOM05D006911 ORTHO05D006663 1.0e-10 69.7 72 62.5
Eucgr.A02012 Eucalyptus grandis HOM05D006911 ORTHO05D006663 1.0e-10 69.7 85 48.2
Gohir.A11G156500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.0e-10 69.7 64 56.2
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.3e-10 69.3 67 55.2
THA.LOC104800829 Tarenaya hassleriana HOM05D006911 ORTHO05D006663 1.7e-10 68.9 55 67.3
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 2.2e-10 68.6 57 63.2
MBI10_g27413_MAGBIO Magnolia biondii HOM05D006911 ORTHO05D006663 2.2e-10 68.6 70 50.0
Ciclev10033778m.g Citrus clementina HOM05D006911 ORTHO05D006663 2.9e-10 68.2 70 52.9
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 6.5e-10 67.0 73 53.4
Glyma.14G029400 Glycine max HOM05D006911 ORTHO05D006663 8.5e-10 66.6 68 58.8
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.1e-09 66.2 70 55.7
Sed0027001 Sechium edule HOM05D006911 ORTHO05D006663 1.1e-09 66.2 70 55.7
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.5e-09 65.1 70 54.3
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 2.5e-09 65.1 70 54.3
Sp1g05240 Schrenkiella parvula HOM05D006911 ORTHO05D006663 3.2e-09 64.7 63 58.7
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 4.2e-09 64.3 70 47.1
Manes.10G042300 Manihot esculenta HOM05D006911 ORTHO05D006663 4.2e-09 64.3 66 47.0
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 4.2e-09 64.3 49 61.2
Lj6g0027673 Lotus japonicus HOM05D006911 ORTHO05D006663 5.5e-09 63.9 65 60.0
C05p04730 Brassica napus HOM05D006911 ORTHO05D006663 1.2e-08 62.8 71 47.9
BolC5t29245H Brassica oleracea HOM05D006911 ORTHO05D006663 1.2e-08 62.8 71 47.9
Lalb_Chr04g0248851 Lupinus albus HOM05D006911 ORTHO05D006663 1.2e-08 62.8 63 57.1
ClCG03G007000 Citrullus lanatus HOM05D006911 ORTHO05D006663 2.1e-08 62.0 67 49.3
PGR083G1670 Punica granatum HOM05D006911 ORTHO05D006663 2.1e-08 62.0 75 52.0
Thhalv10009210m.g Eutrema salsugineum HOM05D006911 ORTHO05D006663 2.7e-08 61.6 64 56.2
Manes.17G067900 Manihot esculenta HOM05D006911 ORTHO05D006663 2.7e-08 61.6 49 61.2
Medtr4g094630 Medicago truncatula HOM05D006911 ORTHO05D006663 2.7e-08 61.6 64 51.6
Lalb_Chr10g0106611 Lupinus albus HOM05D006911 ORTHO05D006663 4.7e-08 60.8 66 57.6
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 6.1e-08 60.5 63 52.4
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 6.1e-08 60.5 75 48.0
Hma1.2p1_0137F.1_g062460 Hydrangea macrophylla HOM05D006911 ORTHO05D006663 8.0e-08 60.1 54 55.6
BraA10t42779Z Brassica rapa HOM05D006911 ORTHO05D006663 1.0e-07 59.7 71 46.5
Phvul.008G193200 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 1.0e-07 59.7 68 55.9
TWI14G1424 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 1.4e-07 59.3 68 55.9
CSS0032663 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 1.8e-07 58.9 50 58.0
Sed0000672 Sechium edule HOM05D006911 ORTHO05D006663 1.8e-07 58.9 67 46.3
BcaB02g06798 Brassica carinata HOM05D006911 ORTHO05D006663 2.3e-07 58.5 86 44.2
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 3.0e-07 58.2 75 48.0
Lj4g0007682 Lotus japonicus HOM05D006911 ORTHO05D006663 3.0e-07 58.2 65 53.8
Gorai.010G239100 Gossypium raimondii HOM05D006911 ORTHO05D006663 5.2e-07 57.4 75 48.0
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 6.7e-07 57.0 75 48.0
RcHm_v2.0_Chr5g0013541 Rosa chinensis HOM05D006911 ORTHO05D006663 6.7e-07 57.0 68 47.1
Sed0015743 Sechium edule HOM05D006911 ORTHO05D006663 6.7e-07 57.0 70 47.1
AL1G16490 Arabidopsis lyrata HOM05D006911 ORTHO05D006663 8.8e-07 56.6 49 57.1
Carub.0001s0584 Capsella rubella HOM05D006911 ORTHO05D006663 8.8e-07 56.6 64 51.6
RcHm_v2.0_Chr7g0229651 Rosa chinensis HOM05D006911 ORTHO05D006663 8.8e-07 56.6 68 47.1
TPR.G4919 Trifolium pratense HOM05D006911 ORTHO05D006663 8.8e-07 56.6 68 50.0
FAN21G0769 Fragaria x ananassa HOM05D006911 ORTHO05D006663 1.2e-06 56.2 68 47.1
Medtr4g094635 Medicago truncatula HOM05D006911 ORTHO05D006663 1.2e-06 56.2 64 50.0
THA.LOC104806122 Tarenaya hassleriana HOM05D010376 ORTHO05D006663 1.2e-06 56.2 71 42.3
Aa31LG1G7540 Aethionema arabicum HOM05D006911 ORTHO05D006663 1.5e-06 55.8 44 61.4
MD05G1287000 Malus domestica HOM05D006911 ORTHO05D006663 1.5e-06 55.8 52 51.9
Migut.M00927 Erythranthe guttata HOM05D006911 ORTHO05D006663 2.0e-06 55.5 55 49.1
CARHR006090 Cardamine hirsuta HOM05D006911 ORTHO05D006663 3.3e-06 54.7 63 47.6
Aqoxy6G00602 Aquilegia oxysepala HOM05D006911 ORTHO05D006663 4.4e-06 54.3 64 51.6
AT1G06475 Arabidopsis thaliana HOM05D006911 ORTHO05D006663 4.4e-06 54.3 46 58.7
Prupe.4G077900 Prunus persica HOM05D006911 ORTHO05D006663 5.7e-06 53.9 52 51.9
Oeu040961.1 Olea europaea HOM05D006911 ORTHO05D006663 9.7e-06 53.1 41 53.7
SalBow6G3836 Salvia bowleyana HOM05D006911 ORTHO05D006663 9.7e-06 53.1 50 56.0


User provided reference genes

Program Settings