Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G132200 Carya illinoinensis HOM05D006699 ORTHO05D008399 6.4e-188 660.6 337 100.0
QL08p041638 Quercus lobata HOM05D006699 ORTHO05D008399 9.0e-158 560.5 337 81.9
QL08p041677 Quercus lobata HOM05D006699 ORTHO05D008399 7.7e-157 557.4 337 81.6
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 6.1e-154 547.7 338 80.8
Haze_13371 Corylus avellana HOM05D006699 ORTHO05D008399 6.7e-153 544.3 338 80.5
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 3.8e-148 528.5 342 78.9
GSVIVG01020707001 Vitis vinifera HOM05D006699 ORTHO05D008399 3.2e-147 525.4 337 76.9
MD09G1238000 Malus domestica HOM05D006699 ORTHO05D008399 2.0e-144 516.2 336 75.9
MD17G1230900 Malus domestica HOM05D006699 ORTHO05D008399 1.3e-143 513.5 336 76.2
Thecc.01G150500 Theobroma cacao HOM05D006699 ORTHO05D008399 2.6e-141 505.8 344 75.3
Eucgr.A01914 Eucalyptus grandis HOM05D006699 ORTHO05D008399 5.9e-141 504.6 337 74.8
Prupe.3G118500 Prunus persica HOM05D006699 ORTHO05D008399 5.9e-141 504.6 337 76.0
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 4.7e-138 495.0 338 74.6
CANSAT64G2599 Cannabis sativa HOM05D006699 ORTHO05D008399 8.0e-138 494.2 339 71.7
PGR042G0843 Punica granatum HOM05D006699 ORTHO05D008399 1.8e-137 493.0 340 74.1
TWI59G0496 Tripterygium wilfordii HOM05D006699 ORTHO05D008399 3.0e-137 492.3 338 72.5
FvH4_6g27380 Fragaria vesca HOM05D006699 ORTHO05D008399 5.2e-137 491.5 337 74.2
Gohir.A12G086400 Gossypium hirsutum HOM05D006699 ORTHO05D008399 1.5e-136 490.0 344 74.4
TAR626G0153 Trochodendron aralioides HOM05D006699 ORTHO05D008399 5.7e-136 488.0 372 68.3
RcHm_v2.0_Chr2g0129651 Rosa chinensis HOM05D006699 ORTHO05D008399 1.7e-135 486.5 335 74.3
Gorai.008G095400 Gossypium raimondii HOM05D006699 ORTHO05D008399 2.2e-135 486.1 342 73.4
Ciclev10015418m.g Citrus clementina HOM05D006699 ORTHO05D008399 2.8e-135 485.7 342 72.8
Potri.014G142200 Populus trichocarpa HOM05D006699 ORTHO05D008399 2.8e-135 485.7 339 71.7
COL.COLO4_33580 Corchorus olitorius HOM05D006699 ORTHO05D008399 3.7e-135 485.3 350 70.9
Gohir.D12G085000 Gossypium hirsutum HOM05D006699 ORTHO05D008399 3.1e-134 482.3 343 73.5
FAN14G2123 Fragaria x ananassa HOM05D006699 ORTHO05D008399 2.9e-132 475.7 349 71.3
arahy.Tifrunner.gnm1.ann1.0K2T49 Arachis hypogaea HOM05D006699 ORTHO05D008399 6.5e-132 474.6 338 72.2
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 1.1e-131 473.8 338 72.5
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 1.9e-131 473.0 345 71.6
Glyma.06G277600 Glycine max HOM05D006699 ORTHO05D008399 2.5e-131 472.6 337 72.1
Rhsim06G0131200 Rhododendron simsii HOM05D006699 ORTHO05D008399 1.6e-130 469.9 303 76.6
CsaV3_6G018450 Cucumis sativus L. HOM05D006699 ORTHO05D008399 2.1e-130 469.5 337 71.2
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 8.0e-130 467.6 350 68.6
Carub.0004s1225 Capsella rubella HOM05D006699 ORTHO05D008399 4.0e-129 465.3 344 69.8
Lj3g0015335 Lotus japonicus HOM05D006699 ORTHO05D008399 4.0e-129 465.3 340 69.4
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 6.8e-129 464.5 368 67.7
Phvul.011G130500 Phaseolus vulgaris HOM05D006699 ORTHO05D008399 1.5e-128 463.4 337 69.1
AT2G31040 Arabidopsis thaliana HOM05D006699 ORTHO05D008399 4.4e-128 461.8 345 69.6
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 4.4e-128 461.8 343 70.8
AL4G26070 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 1.3e-127 460.3 344 69.2
Thhalv10016897m.g Eutrema salsugineum HOM05D006699 ORTHO05D008399 1.7e-127 459.9 342 67.8
AL4G26150 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 2.2e-127 459.5 344 69.2
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 3.7e-127 458.8 342 66.4
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 4.8e-127 458.4 337 69.4
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 6.3e-127 458.0 342 66.4
CARHR124570 Cardamine hirsuta HOM05D006699 ORTHO05D008399 1.1e-126 457.2 344 68.3
Sp4g13510 Schrenkiella parvula HOM05D006699 ORTHO05D008399 1.4e-126 456.8 344 67.4
AUR62039018 Chenopodium quinoa HOM05D006699 ORTHO05D008399 7.0e-126 454.5 349 67.3
Psat7g165360 Pisum sativum HOM05D006699 ORTHO05D008399 9.1e-126 454.1 338 68.3
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 9.1e-126 454.1 341 67.7
HanXRQChr17g0557951 Helianthus annuus HOM05D006699 ORTHO05D008399 4.5e-125 451.8 339 68.1
Lj1A681T38 Lonicera japonica HOM05D006699 ORTHO05D008399 4.5e-125 451.8 336 67.0
Migut.M00261 Erythranthe guttata HOM05D006699 ORTHO05D008399 7.7e-125 451.1 341 68.0
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 1.3e-124 450.3 337 68.0
C04p60180 Brassica napus HOM05D006699 ORTHO05D008399 2.2e-124 449.5 341 68.3
BolC4t27520H Brassica oleracea HOM05D006699 ORTHO05D008399 2.2e-124 449.5 341 68.3
Lalb_Chr01g0006001 Lupinus albus HOM05D006699 ORTHO05D008399 2.9e-124 449.1 339 69.9
BraA04t17899Z Brassica rapa HOM05D006699 ORTHO05D008399 8.5e-124 447.6 341 67.7
A04p23730 Brassica napus HOM05D006699 ORTHO05D008399 1.1e-123 447.2 341 67.4
SGA_v2.0_scaffold9G04816 Striga asiatica HOM05D006699 ORTHO05D008399 7.2e-123 444.5 342 65.5
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 9.4e-123 444.1 327 69.4
Lsat_1_v5_gn_8_140640 Lactuca sativa HOM05D006699 ORTHO05D008399 6.1e-122 441.4 342 66.4
Sabra14G0107300 Salix brachista HOM05D006699 ORTHO05D008399 8.0e-122 441.0 358 65.1
CDE10G1046 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 5.2e-121 438.3 328 65.9
Medtr4g079850 Medicago truncatula HOM05D006699 ORTHO05D008399 8.8e-121 437.6 337 68.5
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 2.0e-120 436.4 331 68.0
ECA233G1148 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.6e-120 436.0 337 66.8
unitig_0.g2026 Utricularia gibba HOM05D006699 ORTHO05D008399 3.4e-120 435.6 365 62.5
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 1.1e-118 430.6 338 68.0
EL10Ac2g03349 Beta vulgaris HOM05D006699 ORTHO05D008399 1.8e-118 429.9 344 65.4
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 1.8e-118 429.9 345 64.1
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 4.1e-118 428.7 347 65.7
Solyc07g055050.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 8.6e-116 421.0 340 65.0
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 1.5e-115 420.2 299 69.9
Sopen07g027160 Solanum pennellii HOM05D006699 ORTHO05D008399 3.3e-115 419.1 340 65.3
Solyc12g010870.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 9.5e-115 417.5 341 63.6
FAN02G3357 Fragaria x ananassa HOM05D006699 ORTHO05D008399 1.6e-114 416.8 302 71.9
Nitab4.5_0000537g0130 Nicotiana tabacum HOM05D006699 ORTHO05D008399 8.9e-113 411.0 342 64.9
Hund07812 Selenicereus undatus HOM05D006699 ORTHO05D008399 1.4e-110 403.7 351 61.0
ATR0602G053 Amborella trichopoda HOM05D006699 ORTHO05D008399 5.4e-110 401.7 325 63.1
DCAR_017060 Daucus carota HOM05D006699 ORTHO05D008399 2.7e-109 399.4 329 63.2
Manes.01G133200 Manihot esculenta HOM05D006699 ORTHO05D008399 4.6e-109 398.7 274 74.8
Aa31LG1G7380 Aethionema arabicum HOM05D006699 ORTHO05D008399 3.3e-107 392.5 342 60.8
Nitab4.5_0009754g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 5.6e-107 391.7 336 64.3
Nitab4.5_0011277g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 8.9e-105 384.4 345 60.9
Os01g0673800 Oryza sativa ssp. japonica HOM05D006699 ORTHO05D008399 5.8e-104 381.7 325 61.2
Sed0000889 Sechium edule HOM05D006699 ORTHO05D008399 5.4e-102 375.2 274 71.2
Peaxi162Scf00469g00217 Petunia axillaris HOM05D006699 ORTHO05D008399 1.4e-97 360.5 333 60.4
Sc06g0009080 Simmondsia chinensis HOM05D006699 ORTHO05D008399 4.0e-97 359.0 265 68.7
Aqoxy1G02064 Aquilegia oxysepala HOM05D006699 ORTHO05D008399 2.9e-95 352.8 262 70.2
Sed0016519 Sechium edule HOM05D006699 ORTHO05D008399 6.4e-95 351.7 347 58.8
Lju1655A0G36 Lonicera japonica HOM05D006699 ORTHO05D008399 3.2e-94 349.4 400 49.2
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 8.6e-92 341.3 233 74.2
Eucgr.K01127 Eucalyptus grandis HOM05D006699 ORTHO05D008399 7.3e-91 338.2 331 57.1
Oeu018752.1 Olea europaea HOM05D006699 ORTHO05D008399 8.1e-90 334.7 233 71.7
TPR.G28306 Trifolium pratense HOM05D006699 ORTHO05D008399 2.9e-87 326.2 277 62.5
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 1.4e-86 323.9 229 73.4
Cc05_g08340 Coffea canephora HOM05D006699 ORTHO05D008399 9.2e-86 321.2 248 68.1
vmacro12376 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 3.6e-82 309.3 335 52.2
HPP92_009665 Vanilla planifolia HOM05D006699 ORTHO05D008399 6.8e-81 305.1 397 44.6
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 1.5e-75 287.3 311 51.8
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 2.6e-72 276.6 184 75.0
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 2.4e-70 270.0 334 47.9
Cpa.g.sc52.174 Carica papaya HOM05D006699 ORTHO05D008399 6.9e-65 251.9 183 70.5
Atru.chr6.2796 Acer truncatum HOM05D006699 ORTHO05D008399 4.9e-63 245.7 184 68.5
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 5.1e-60 235.7 276 48.9
SEGI_23271 Sequoiadendron giganteum HOM05D006699 ORTHO05D008399 2.5e-59 233.4 253 52.2
SMO014G0045 Selaginella moellendorffii HOM05D006699 ORTHO05D008399 1.0e-55 221.5 325 41.5
Zm00001eb360100 Zea mays HOM05D006699 ORTHO05D008399 7.1e-54 215.3 237 51.9
Cc05_g08350 Coffea canephora HOM05D006699 ORTHO05D008399 2.1e-37 160.6 100 78.0
Ah.01g003520 Amaranthus hybridus HOM05D006699 ORTHO05D008399 3.2e-30 136.7 115 58.3
Atru.chr6.2795 Acer truncatum HOM05D006699 ORTHO05D008399 4.7e-29 132.9 74 86.5
vmacro12375 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 1.1e-27 128.3 102 60.8
BraA03t11005Z Brassica rapa HOM05D006699 ORTHO05D008399 8.5e-23 112.1 89 61.8
A03p17330 Brassica napus HOM05D006699 ORTHO05D008399 5.5e-22 109.4 89 61.8
Cre01.g049600 Chlamydomonas reinhardtii HOM05D006699 ORTHO05D008399 1.6e-21 107.8 289 29.8
CDE10G0215 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 1.4e-20 104.8 60 81.7
PRCOL_00001453 Prasinoderma coloniale HOM05D006699 ORTHO05D008399 5.2e-20 102.8 256 31.6
Lsat_1_v5_gn_2_38761 Lactuca sativa HOM05D006699 ORTHO05D008399 2.7e-16 90.5 77 62.3
MCO04G044 Micromonas commoda HOM05D006699 ORTHO05D008399 2.9e-15 87.0 197 32.5
C03p20440 Brassica napus HOM05D006699 ORTHO05D042655 1.7e-10 71.2 54 64.8
BolC3t14422H Brassica oleracea HOM05D006699 ORTHO05D042655 1.7e-10 71.2 54 64.8
TPR.G33085 Trifolium pratense HOM05D006699 ORTHO05D008399 7.0e-09 65.9 42 73.8
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 1.1e-06 58.5 178 29.8
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 4.2e-06 56.6 150 29.3
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 7.2e-06 55.8 165 30.3


User provided reference genes

Program Settings