Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G126300 Carya illinoinensis HOM05D008409 ORTHO05D010483 7.4e-83 310.5 152 100.0
Haze_13167 Corylus avellana HOM05D008409 ORTHO05D010483 1.3e-71 273.1 152 84.2
QL08p038864 Quercus lobata HOM05D008409 ORTHO05D010483 7.1e-70 267.3 150 83.3
Atru.chr6.2992 Acer truncatum HOM05D008409 ORTHO05D010483 2.8e-66 255.4 152 78.3
Potri.013G131000 Populus trichocarpa HOM05D008409 ORTHO05D010483 2.0e-64 249.2 152 78.3
Actinidia11031 Actinidia chinensis HOM05D008409 ORTHO05D010483 2.6e-64 248.8 152 76.3
Thecc.02G180200 Theobroma cacao HOM05D008409 ORTHO05D010483 2.6e-64 248.8 152 77.0
GSVIVG01020550001 Vitis vinifera HOM05D008409 ORTHO05D010483 5.0e-63 244.6 150 78.0
ClCG07G002880 Citrullus lanatus HOM05D008409 ORTHO05D010483 8.5e-63 243.8 152 71.7
Nn1g06548 Nelumbo nucifera HOM05D008409 ORTHO05D010483 1.1e-62 243.4 149 75.2
MELO3C018733.2 Cucumis melo HOM05D008409 ORTHO05D010483 4.2e-62 241.5 152 69.7
CsaV3_7G004460 Cucumis sativus L. HOM05D008409 ORTHO05D010483 5.5e-62 241.1 152 69.7
TAR627G0101 Trochodendron aralioides HOM05D008409 ORTHO05D010483 2.1e-61 239.2 146 76.7
Sed0018099 Sechium edule HOM05D008409 ORTHO05D010483 2.7e-61 238.8 150 70.0
Manes.12G089218 Manihot esculenta HOM05D008409 ORTHO05D010483 6.1e-61 237.7 147 74.8
Sabra13G0110600 Salix brachista HOM05D008409 ORTHO05D010483 1.0e-60 236.9 148 74.3
Ciclev10017070m.g Citrus clementina HOM05D008409 ORTHO05D010483 1.3e-60 236.5 152 73.7
PGR142G1945 Punica granatum HOM05D008409 ORTHO05D010483 1.3e-60 236.5 152 69.7
MD09G1247200 Malus domestica HOM05D008409 ORTHO05D010483 1.1e-59 233.4 149 73.2
Gorai.012G128600 Gossypium raimondii HOM05D008409 ORTHO05D010483 1.3e-58 229.9 153 69.3
TWI36G0630 Tripterygium wilfordii HOM05D008409 ORTHO05D010483 1.4e-57 226.5 152 67.8
Gohir.A04G103600 Gossypium hirsutum HOM05D008409 ORTHO05D010483 2.4e-57 225.7 153 68.0
Aqoxy1G02429 Aquilegia oxysepala HOM05D008409 ORTHO05D010483 3.1e-57 225.3 148 72.3
Peaxi162Scf00059g01918 Petunia axillaris HOM05D008409 ORTHO05D010483 3.1e-57 225.3 147 71.4
Gohir.D04G143000 Gossypium hirsutum HOM05D008409 ORTHO05D010483 5.3e-57 224.6 153 68.0
COL.COLO4_30195 Corchorus olitorius HOM05D008409 ORTHO05D010483 1.2e-56 223.4 139 75.5
PSO675G8696 Papaver somniferum HOM05D008409 ORTHO05D010483 6.5e-55 217.6 147 69.4
CAN.G578.4 Capsicum annuum HOM05D008409 ORTHO05D010483 1.9e-54 216.1 144 70.8
PSO541G0816 Papaver somniferum HOM05D008409 ORTHO05D010483 2.7e-53 212.2 149 67.1
PGSC0003DMG400013143 Solanum tuberosum HOM05D008409 ORTHO05D010483 1.8e-52 209.5 148 66.9
CSS0031688 Camellia sinensis var. sinensis HOM05D008409 ORTHO05D010483 2.3e-52 209.1 142 74.6
Solyc10g008330.4 Solanum lycopersicum HOM05D008409 ORTHO05D010483 3.9e-52 208.4 148 66.9
Os08g0374000 Oryza sativa ssp. japonica HOM05D008409 ORTHO05D010483 1.1e-51 206.8 148 63.5
Sopen10g004190 Solanum pennellii HOM05D008409 ORTHO05D010483 3.3e-51 205.3 148 66.2
ATR0737G133 Amborella trichopoda HOM05D008409 ORTHO05D010483 2.0e-48 196.1 147 61.9
MBI06_g04179_MAGBIO Magnolia biondii HOM05D008409 ORTHO05D010483 5.9e-48 194.5 148 62.8
Nitab4.5_0009473g0020 Nicotiana tabacum HOM05D008409 ORTHO05D010483 5.9e-48 194.5 148 65.5
vmacro12306 Vaccinium macrocarpon HOM05D008409 ORTHO05D010483 2.0e-43 179.5 119 72.3
SEGI_00232 Sequoiadendron giganteum HOM05D008409 ORTHO05D010483 3.8e-39 165.2 154 51.3
Dinv23634 Davidia involucrata HOM05D008409 ORTHO05D010483 6.5e-39 164.5 109 69.7
QL08p038938 Quercus lobata HOM05D008409 ORTHO05D010483 3.6e-37 158.7 92 77.2
SMO332G0032 Selaginella moellendorffii HOM05D008409 ORTHO05D000186 2.3e-15 86.3 140 35.0
SEGI_04347 Sequoiadendron giganteum HOM05D000197 ORTHO05D000114 1.1e-14 84.0 146 31.5
PGR119G0191 Punica granatum HOM05D000197 ORTHO05D000114 2.5e-14 82.8 148 35.8
Eucgr.B02546 Eucalyptus grandis HOM05D000197 ORTHO05D000114 5.6e-14 81.6 150 36.0
Lsat_1_v5_gn_5_100541 Lactuca sativa HOM05D000197 ORTHO05D000114 4.7e-13 78.6 146 34.9
ECA246G2358 Erigeron canadensis HOM05D000197 ORTHO05D000114 8.0e-13 77.8 146 32.9
Lsat_1_v5_gn_5_100601 Lactuca sativa HOM05D000197 ORTHO05D000114 1.8e-12 76.6 146 33.6
Dinv24891 Davidia involucrata HOM05D000197 ORTHO05D000114 4.0e-12 75.5 144 34.0
HanXRQChr17g0563811 Helianthus annuus HOM05D000197 ORTHO05D000114 8.9e-12 74.3 146 33.6
SMO141G0292 Selaginella moellendorffii HOM05D000322 ORTHO05D010483 8.9e-12 74.3 147 29.9
TAR374G0922 Trochodendron aralioides HOM05D000197 ORTHO05D000114 8.9e-12 74.3 146 34.2
HPP92_015289 Vanilla planifolia HOM05D000197 ORTHO05D000114 8.9e-12 74.3 146 32.9
Lsat_1_v5_gn_3_48941 Lactuca sativa HOM05D000197 ORTHO05D000114 1.5e-11 73.6 146 32.9
HanXRQChr11g0351041 Helianthus annuus HOM05D000197 ORTHO05D000114 2.0e-11 73.2 146 33.6
HPP92_010019 Vanilla planifolia HOM05D000197 ORTHO05D000114 2.0e-11 73.2 146 32.2
BcaB03g14124 Brassica carinata HOM05D000197 ORTHO05D000114 3.4e-11 72.4 146 34.9
A07p13670 Brassica napus HOM05D000197 ORTHO05D000114 3.4e-11 72.4 146 34.9
BraA07t29119Z Brassica rapa HOM05D000197 ORTHO05D000114 3.4e-11 72.4 146 34.9
GSVIVG01020183001 Vitis vinifera HOM05D000197 ORTHO05D000114 3.4e-11 72.4 135 35.6
AL1G37780 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 4.4e-11 72.0 146 33.6
Thhalv10008991m.g Eutrema salsugineum HOM05D000197 ORTHO05D000114 4.4e-11 72.0 146 34.2
AT1G24020 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 5.7e-11 71.6 146 33.6
C07p20100 Brassica napus HOM05D000197 ORTHO05D000114 5.7e-11 71.6 146 34.9
BolC7t42531H Brassica oleracea HOM05D000197 ORTHO05D000114 5.7e-11 71.6 146 34.9
TAR622G0730 Trochodendron aralioides HOM05D000197 ORTHO05D000114 5.7e-11 71.6 152 32.2
BcaC06g35074 Brassica carinata HOM05D000197 ORTHO05D000114 7.5e-11 71.2 146 34.2
SGA_v2.0_scaffold8G04238 Striga asiatica HOM05D000197 ORTHO05D000114 9.8e-11 70.9 144 31.9
MBI15_g00934_MAGBIO Magnolia biondii HOM05D000197 ORTHO05D000114 1.3e-10 70.5 134 33.6
Zm00001eb080380 Zea mays HOM05D000197 ORTHO05D000114 1.3e-10 70.5 139 31.7
Nn4g22865 Nelumbo nucifera HOM05D000197 ORTHO05D000114 2.2e-10 69.7 153 29.4
Manes.05G090000 Manihot esculenta HOM05D000197 ORTHO05D000114 2.9e-10 69.3 146 32.2
Ca_04619_v3 Cicer arietinum L. HOM05D000197 ORTHO05D000114 4.9e-10 68.6 128 35.2
Glyma.01G034000 Glycine max HOM05D000197 ORTHO05D000114 4.9e-10 68.6 135 35.6
Carub.0001s2344 Capsella rubella HOM05D000197 ORTHO05D000114 8.3e-10 67.8 146 32.9
CsaV3_5G031770 Cucumis sativus L. HOM05D000197 ORTHO05D000114 8.3e-10 67.8 125 37.6
Mapoly0100s0057 Marchantia polymorpha HOM05D008409 ORTHO05D010483 8.3e-10 67.8 147 32.0
RcHm_v2.0_Chr4g0441741 Rosa chinensis HOM05D000197 ORTHO05D000114 8.3e-10 67.8 149 29.5
TAR369G1071 Trochodendron aralioides HOM05D000197 ORTHO05D000114 8.3e-10 67.8 120 34.2
Glyma.02G032300 Glycine max HOM05D000197 ORTHO05D000114 1.1e-09 67.4 135 34.1
SalBow2G0185 Salvia bowleyana HOM05D000197 ORTHO05D000114 1.1e-09 67.4 148 35.1
Aa31LG7G7810 Aethionema arabicum HOM05D000197 ORTHO05D000114 1.4e-09 67.0 146 32.2
MELO3C012016.2 Cucumis melo HOM05D000197 ORTHO05D000114 1.4e-09 67.0 132 36.4
Eucgr.G02178 Eucalyptus grandis HOM05D000197 ORTHO05D000114 1.4e-09 67.0 149 28.2
ClCG05G025130 Citrullus lanatus HOM05D000197 ORTHO05D000114 1.8e-09 66.6 132 36.4
TAR629G0887 Trochodendron aralioides HOM05D000197 ORTHO05D000114 1.8e-09 66.6 137 31.4
Atru.chr11.1977 Acer truncatum HOM05D000197 ORTHO05D000114 2.4e-09 66.2 146 31.5
Cfa009126 Carpinus fangiana HOM05D000197 ORTHO05D000114 2.4e-09 66.2 146 33.6
CiPaw.05G148600 Carya illinoinensis HOM05D000197 ORTHO05D000114 2.4e-09 66.2 146 32.9
Os04g0465600 Oryza sativa ssp. japonica HOM05D000197 ORTHO05D000114 2.4e-09 66.2 141 32.6
CSS0039522 Camellia sinensis var. sinensis HOM05D000197 ORTHO05D000114 3.2e-09 65.9 144 34.0
Ciclev10032973m.g Citrus clementina HOM05D000197 ORTHO05D000114 3.2e-09 65.9 146 34.2
Haze_12156 Corylus avellana HOM05D000197 ORTHO05D000114 4.1e-09 65.5 150 32.0
MD16G1024000 Malus domestica HOM05D000197 ORTHO05D000114 4.1e-09 65.5 136 28.7
Hund05969 Selenicereus undatus HOM05D000197 ORTHO05D000114 4.1e-09 65.5 146 31.5
CARHR024320 Cardamine hirsuta HOM05D000197 ORTHO05D000114 5.4e-09 65.1 144 31.2
Dinv31005 Davidia involucrata HOM05D000197 ORTHO05D000114 5.4e-09 65.1 144 32.6
Dinv31097 Davidia involucrata HOM05D000197 ORTHO05D000114 5.4e-09 65.1 144 32.6
FvH4_4g32760 Fragaria vesca HOM05D000197 ORTHO05D000114 5.4e-09 65.1 149 29.5
FAN12G1963 Fragaria x ananassa HOM05D000197 ORTHO05D000114 5.4e-09 65.1 149 29.5
TAR622G0624 Trochodendron aralioides HOM05D000197 ORTHO05D000114 5.4e-09 65.1 146 32.2
Lj6C802G2 Lonicera japonica HOM05D000197 ORTHO05D000114 7.0e-09 64.7 143 30.1
Mapoly0131s0015 Marchantia polymorpha HOM05D012277 ORTHO05D000114 7.0e-09 64.7 118 33.9
SalBow2G1202 Salvia bowleyana HOM05D000197 ORTHO05D000114 7.0e-09 64.7 145 34.5
Psat2g109600 Pisum sativum HOM05D000197 ORTHO05D000114 9.2e-09 64.3 135 31.9
vmacro16272 Vaccinium macrocarpon HOM05D000197 ORTHO05D000114 9.2e-09 64.3 135 34.1
FAN17G1064 Fragaria x ananassa HOM05D000197 ORTHO05D000114 1.2e-08 63.9 149 28.9
PGR119G0429 Punica granatum HOM05D000197 ORTHO05D000114 1.2e-08 63.9 149 24.2
vmacro16271 Vaccinium macrocarpon HOM05D000197 ORTHO05D000114 1.2e-08 63.9 135 33.3
Actinidia15014 Actinidia chinensis HOM05D000197 ORTHO05D000114 2.0e-08 63.2 134 33.6
Ca_22763_v3 Cicer arietinum L. HOM05D000197 ORTHO05D000114 2.0e-08 63.2 147 29.3
unitig_22.g6474 Utricularia gibba HOM05D000197 ORTHO05D000114 2.7e-08 62.8 147 29.9
Rhsim12G0123000 Rhododendron simsii HOM05D000197 ORTHO05D000114 3.5e-08 62.4 135 33.3
AagrBONN_evm.TU.Sc2ySwM_228.4478 Anthoceros agrestis HOM05D008409 ORTHO05D010483 4.6e-08 62.0 142 29.6
Cc11_g14370 Coffea canephora HOM05D000197 ORTHO05D000114 4.6e-08 62.0 146 32.9
ECA246G1203 Erigeron canadensis HOM05D000226 ORTHO05D000114 7.8e-08 61.2 118 33.9
Pp3c1_10460 Physcomitrium patens HOM05D012277 ORTHO05D010483 7.8e-08 61.2 149 27.5
PSO339G2973 Papaver somniferum HOM05D000197 ORTHO05D000114 1.0e-07 60.8 133 30.8
Sabra10G0068600 Salix brachista HOM05D000197 ORTHO05D000114 1.0e-07 60.8 132 31.1
TWI36G1572 Tripterygium wilfordii HOM05D000197 ORTHO05D000114 1.0e-07 60.8 132 33.3
Eucgr.F03349 Eucalyptus grandis HOM05D001593 ORTHO05D010032 1.3e-07 60.5 153 27.5
SMO347G0071 Selaginella moellendorffii HOM05D008409 ORTHO05D010483 1.3e-07 60.5 131 29.8
TPR.G25548 Trifolium pratense HOM05D000197 ORTHO05D000114 1.3e-07 60.5 157 30.6
PSO384G3017 Papaver somniferum HOM05D000197 ORTHO05D000114 1.7e-07 60.1 133 30.8
Potri.010G096000 Populus trichocarpa HOM05D000197 ORTHO05D000114 1.7e-07 60.1 132 31.8
Aqoxy3G00935 Aquilegia oxysepala HOM05D000197 ORTHO05D000114 2.3e-07 59.7 151 27.8
A08p28340 Brassica napus HOM05D000197 ORTHO05D000114 2.3e-07 59.7 125 29.6
Psat4g125760 Pisum sativum HOM05D000197 ORTHO05D000114 2.3e-07 59.7 140 32.1
AUR62013976 Chenopodium quinoa HOM05D000197 ORTHO05D000114 3.0e-07 59.3 120 31.7
CiPaw.06G047600 Carya illinoinensis HOM05D000197 ORTHO05D000114 3.9e-07 58.9 130 32.3
Lj3A1050T27 Lonicera japonica HOM05D000197 ORTHO05D000114 5.0e-07 58.5 146 33.6
arahy.Tifrunner.gnm1.ann1.M7WURA Arachis hypogaea HOM05D000197 ORTHO05D000114 6.6e-07 58.2 143 32.2
CiPaw.06G033500 Carya illinoinensis HOM05D000197 ORTHO05D000114 6.6e-07 58.2 130 32.3
Mapoly0063s0024 Marchantia polymorpha HOM05D008409 ORTHO05D010032 6.6e-07 58.2 125 34.4
PSO339G3956 Papaver somniferum HOM05D000197 ORTHO05D000114 6.6e-07 58.2 131 30.5
TWI75G0119 Tripterygium wilfordii HOM05D000197 ORTHO05D000114 6.6e-07 58.2 127 32.3
AUR62005328 Chenopodium quinoa HOM05D000197 ORTHO05D000114 8.6e-07 57.8 120 30.8
PSO407G0401 Papaver somniferum HOM05D000197 ORTHO05D000114 8.6e-07 57.8 106 26.4
Pp3c13_23010 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.1e-06 57.4 132 28.8
Pp3c13_23030 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.1e-06 57.4 132 28.8
Aa31LG7G7110 Aethionema arabicum HOM05D000197 ORTHO05D000114 1.5e-06 57.0 63 41.3
AL1G36690 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 1.5e-06 57.0 131 26.7
AT1G23120 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 1.5e-06 57.0 133 27.8
PSO384G1892 Papaver somniferum HOM05D000197 ORTHO05D000114 1.5e-06 57.0 131 29.0
arahy.Tifrunner.gnm1.ann1.HV6VTP Arachis hypogaea HOM05D000197 ORTHO05D000114 1.9e-06 56.6 143 32.2
PSO063G5952 Papaver somniferum HOM05D000197 ORTHO05D000114 1.9e-06 56.6 143 27.3
PSO478G3712 Papaver somniferum HOM05D000197 ORTHO05D000114 1.9e-06 56.6 150 28.7
arahy.Tifrunner.gnm1.ann1.SKIU1M Arachis hypogaea HOM05D000197 ORTHO05D000114 2.5e-06 56.2 149 28.2
COL.COLO4_08129 Corchorus olitorius HOM05D001593 ORTHO05D002007 2.5e-06 56.2 120 30.0
Phvul.011G154100 Phaseolus vulgaris HOM05D001593 ORTHO05D010032 2.5e-06 56.2 152 24.3
Hund01084 Selenicereus undatus HOM05D008409 ORTHO05D010483 3.3e-06 55.8 40 65.0
DCAR_009020 Daucus carota HOM05D001593 ORTHO05D002007 4.3e-06 55.5 129 31.8
Gohir.D01G144100 Gossypium hirsutum HOM05D000197 ORTHO05D000114 4.3e-06 55.5 153 24.8
Peaxi162Scf00815g00012 Petunia axillaris HOM05D000197 ORTHO05D000114 4.3e-06 55.5 150 26.0
Prupe.4G188300 Prunus persica HOM05D001593 ORTHO05D010032 4.3e-06 55.5 153 24.8
TPR.G4435 Trifolium pratense HOM05D000197 ORTHO05D000114 4.3e-06 55.5 160 28.1
GSVIVG01011728001 Vitis vinifera HOM05D000197 ORTHO05D000114 5.6e-06 55.1 142 25.4
Carub.0001s2264 Capsella rubella HOM05D000197 ORTHO05D000114 7.3e-06 54.7 68 35.3
DCAR_020417 Daucus carota HOM05D001593 ORTHO05D002007 7.3e-06 54.7 124 29.0
Gorai.002G178000 Gossypium raimondii HOM05D000197 ORTHO05D000114 7.3e-06 54.7 153 24.8
Actinidia12371 Actinidia chinensis HOM05D000197 ORTHO05D000114 9.5e-06 54.3 155 27.1
PSO782G5193 Papaver somniferum HOM05D000197 ORTHO05D000114 9.5e-06 54.3 101 34.7


User provided reference genes

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