Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G125700 Carya illinoinensis HOM05D005953 ORTHO05D004056 1.4e-46 189.5 115 100.0
Cfa014612 Carpinus fangiana HOM05D005953 ORTHO05D004056 2.2e-15 85.9 74 83.8
CiPaw.03G176600 Carya illinoinensis HOM05D005953 ORTHO05D004056 2.1e-13 79.3 74 81.1
QL02p049480 Quercus lobata HOM05D005953 ORTHO05D004056 7.4e-11 70.9 76 56.6
QL08p038675 Quercus lobata HOM05D005953 ORTHO05D004056 7.4e-11 70.9 76 56.6
Manes.12G089522 Manihot esculenta HOM05D005953 ORTHO05D004056 2.4e-09 65.9 79 60.8
Medtr2g090340 Medicago truncatula HOM05D005953 ORTHO05D004056 3.1e-09 65.5 74 55.4
Ciclev10017361m.g Citrus clementina HOM05D005953 ORTHO05D004056 4.1e-09 65.1 78 51.3
Psat0s741g0120 Pisum sativum HOM05D005953 ORTHO05D004056 1.2e-08 63.5 79 60.8
Atru.chr6.2998 Acer truncatum HOM05D005953 ORTHO05D004056 1.5e-08 63.2 76 47.4
MD17G1240800 Malus domestica HOM05D005953 ORTHO05D004056 1.5e-08 63.2 77 70.1
Ca_01501_v3 Cicer arietinum L. HOM05D005953 ORTHO05D004056 2.6e-08 62.4 74 54.1
Manes.13G147000 Manihot esculenta HOM05D005953 ORTHO05D004056 3.4e-08 62.0 80 65.0
ECA246G2973 Erigeron canadensis HOM05D005953 ORTHO05D004056 4.5e-08 61.6 74 43.2
Potri.019G100601 Populus trichocarpa HOM05D005953 ORTHO05D004056 4.5e-08 61.6 74 48.6
arahy.Tifrunner.gnm1.ann1.4Y3SQC Arachis hypogaea HOM05D005953 ORTHO05D004056 5.9e-08 61.2 74 67.6
Oeu045817.1 Olea europaea HOM05D005953 ORTHO05D004056 1.3e-07 60.1 75 54.7
Prupe.3G137400 Prunus persica HOM05D005953 ORTHO05D004056 1.3e-07 60.1 83 57.8
MELO3C018738.2 Cucumis melo HOM05D005953 ORTHO05D004056 2.2e-07 59.3 81 44.4
arahy.Tifrunner.gnm1.ann1.XD6XV6 Arachis hypogaea HOM05D005953 ORTHO05D004056 2.9e-07 58.9 74 50.0
MELO3C013618.2 Cucumis melo HOM05D005953 ORTHO05D004056 2.9e-07 58.9 75 52.0
Sed0010329 Sechium edule HOM05D005953 ORTHO05D004056 2.9e-07 58.9 79 64.6
Gohir.A04G103800 Gossypium hirsutum HOM05D005953 ORTHO05D004056 5.0e-07 58.2 74 45.9
ClCG02G017620 Citrullus lanatus HOM05D005953 ORTHO05D004056 6.5e-07 57.8 74 60.8
Eucgr.A01816 Eucalyptus grandis HOM05D005953 ORTHO05D004056 6.5e-07 57.8 80 60.0
Gohir.A03G156801 Gossypium hirsutum HOM05D025024 ORTHO05D004056 6.5e-07 57.8 116 40.5
GSVIVG01020541001 Vitis vinifera HOM05D005953 ORTHO05D004056 6.5e-07 57.8 79 45.6
CsaV3_7G004410 Cucumis sativus L. HOM05D005953 ORTHO05D004056 8.5e-07 57.4 80 43.8
Gohir.D04G143500 Gossypium hirsutum HOM05D005953 ORTHO05D004056 8.5e-07 57.4 74 45.9
Gorai.012G128900 Gossypium raimondii HOM05D005953 ORTHO05D004056 8.5e-07 57.4 74 45.9
HanXRQChr17g0541941 Helianthus annuus HOM05D005953 ORTHO05D004056 8.5e-07 57.4 79 45.6
MD09G1247900 Malus domestica HOM05D005953 ORTHO05D004056 8.5e-07 57.4 81 63.0
arahy.Tifrunner.gnm1.ann1.RLZ54R Arachis hypogaea HOM05D005953 ORTHO05D004056 1.1e-06 57.0 74 47.3
ClCG07G002930 Citrullus lanatus HOM05D005953 ORTHO05D004056 1.1e-06 57.0 80 43.8
arahy.Tifrunner.gnm1.ann1.GJ3E3V Arachis hypogaea HOM05D005953 ORTHO05D004056 1.4e-06 56.6 74 62.2
Sp7g26250 Schrenkiella parvula HOM05D005953 ORTHO05D004056 1.4e-06 56.6 75 42.7
Lj3g0009023 Lotus japonicus HOM05D005953 ORTHO05D004056 1.9e-06 56.2 77 48.1
Phvul.004G108400 Phaseolus vulgaris HOM05D025024 ORTHO05D004056 1.9e-06 56.2 40 62.5
Potri.019G111501 Populus trichocarpa HOM05D005953 ORTHO05D004056 1.9e-06 56.2 74 58.1
Thecc.02G179300 Theobroma cacao HOM05D005953 ORTHO05D004056 1.9e-06 56.2 79 48.1
Lsat_1_v5_gn_8_134201 Lactuca sativa HOM05D005953 ORTHO05D004056 2.5e-06 55.8 74 44.6
Nitab4.5_0000512g0060 Nicotiana tabacum HOM05D005953 ORTHO05D004056 2.5e-06 55.8 79 60.8
CARHR236000 Cardamine hirsuta HOM05D005953 ORTHO05D004056 3.2e-06 55.5 36 69.4
Ca_17688_v3 Cicer arietinum L. HOM05D005953 ORTHO05D004056 3.2e-06 55.5 39 66.7
Gorai.005G201700 Gossypium raimondii HOM05D025024 ORTHO05D004056 3.2e-06 55.5 122 39.3
Migut.H01186 Erythranthe guttata HOM05D005953 ORTHO05D004056 4.2e-06 55.1 76 47.4
Gohir.D02G180001 Gossypium hirsutum HOM05D025024 ORTHO05D004056 4.2e-06 55.1 75 45.3
Hma1.2p1_1201F.1_g266560 Hydrangea macrophylla HOM05D005953 ORTHO05D004056 4.2e-06 55.1 77 44.2
Nitab4.5_0002169g0120 Nicotiana tabacum HOM05D005953 ORTHO05D004056 5.5e-06 54.7 102 52.0
Carub.0007s1247 Capsella rubella HOM05D005953 ORTHO05D004056 7.2e-06 54.3 80 40.0
TAR626G0584 Trochodendron aralioides HOM05D005953 ORTHO05D004056 7.2e-06 54.3 78 43.6
Glyma.12G112600 Glycine max HOM05D005953 ORTHO05D004056 9.4e-06 53.9 74 48.6
Lalb_Chr03g0029431 Lupinus albus HOM05D005953 ORTHO05D004056 9.4e-06 53.9 74 44.6
Lalb_Chr14g0366901 Lupinus albus HOM05D005953 ORTHO05D004056 9.4e-06 53.9 79 44.3
SalBow1G2785 Salvia bowleyana HOM05D005953 ORTHO05D004056 9.4e-06 53.9 75 46.7


User provided reference genes

Program Settings