Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G124200 Carya illinoinensis HOM05D005523 ORTHO05D007089 2.8e-75 285.0 129 100.0
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 2.0e-25 119.4 72 79.2
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 1.8e-18 96.3 72 65.3
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 1.8e-18 96.3 72 65.3
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 1.3e-16 90.1 72 61.1
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 3.3e-15 85.5 72 58.3
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 8.0e-14 80.9 72 50.0
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 1.1e-13 80.5 72 50.0
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 1.4e-13 80.1 72 51.4
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 1.8e-13 79.7 72 54.2
CSS0024141 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 2.3e-13 79.3 71 52.1
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 3.1e-13 79.0 72 54.2
Cpa.g.sc1.132 Carica papaya HOM05D005523 ORTHO05D007089 4.0e-13 78.6 83 47.0
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 5.2e-13 78.2 74 56.8
CSS0004547 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 8.9e-13 77.4 69 52.2
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 8.9e-13 77.4 72 54.2
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 8.9e-13 77.4 76 52.6
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 1.2e-12 77.0 72 51.4
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 1.5e-12 76.6 72 51.4
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 1.5e-12 76.6 74 55.4
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 1.5e-12 76.6 74 55.4
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 2.0e-12 76.3 72 47.2
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 2.6e-12 75.9 72 51.4
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 5.8e-12 74.7 72 51.4
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 7.5e-12 74.3 73 47.9
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 7.5e-12 74.3 72 50.0
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 9.8e-12 73.9 72 52.8
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 1.3e-11 73.6 89 46.1
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 1.3e-11 73.6 89 46.1
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 2.2e-11 72.8 72 47.2
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 2.2e-11 72.8 74 51.4
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 2.9e-11 72.4 72 48.6
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 4.9e-11 71.6 72 48.6
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 4.9e-11 71.6 86 46.5
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 6.4e-11 71.2 74 50.0
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 6.4e-11 71.2 72 48.6
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 6.4e-11 71.2 74 50.0
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 6.4e-11 71.2 72 47.2
VMungo0251G1186 Vigna mungo HOM05D005523 ORTHO05D007089 6.4e-11 71.2 72 50.0
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 8.3e-11 70.9 70 47.1
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 1.1e-10 70.5 72 48.6
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 1.1e-10 70.5 72 48.6
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 1.1e-10 70.5 72 47.2
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 1.1e-10 70.5 72 47.2
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 2.4e-10 69.3 72 45.8
ATR0177G042 Amborella trichopoda HOM05D005523 ORTHO05D007089 3.2e-10 68.9 96 40.6
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 4.1e-10 68.6 72 48.6
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 4.1e-10 68.6 72 51.4
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 7.0e-10 67.8 72 41.7
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 9.2e-10 67.4 72 48.6
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 9.2e-10 67.4 72 48.6
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 1.2e-09 67.0 89 42.7
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 1.2e-09 67.0 72 48.6
CSS0028074 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D026295 1.6e-09 66.6 111 36.9
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 1.6e-09 66.6 73 45.2
Oeu021804.1 Olea europaea HOM05D005523 ORTHO05D007089 1.6e-09 66.6 73 45.2
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 2.0e-09 66.2 72 44.4
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 2.0e-09 66.2 73 50.7
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 2.7e-09 65.9 76 44.7
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 2.7e-09 65.9 70 48.6
CSS0023178 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 4.6e-09 65.1 111 36.0
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 4.6e-09 65.1 70 48.6
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 6.0e-09 64.7 72 43.1
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 1.0e-08 63.9 72 48.6
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 1.0e-08 63.9 72 43.1
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 1.3e-08 63.5 72 40.3
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 1.7e-08 63.2 72 47.2
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 3.0e-08 62.4 86 41.9
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 5.0e-08 61.6 57 49.1
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 5.0e-08 61.6 67 46.3
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 5.0e-08 61.6 72 48.6
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 6.6e-08 61.2 70 44.3
Os12g0574900 Oryza sativa ssp. japonica HOM05D005523 ORTHO05D007089 1.5e-07 60.1 69 40.6
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 1.9e-07 59.7 72 41.7
CDE10G0400 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 1.9e-07 59.7 72 44.4
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 3.3e-07 58.9 72 44.4
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 3.3e-07 58.9 73 41.1
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 4.3e-07 58.5 75 41.3
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 9.5e-07 57.4 72 44.4
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 1.2e-06 57.0 88 38.6
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 1.6e-06 56.6 88 36.4
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 2.1e-06 56.2 88 38.6
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 3.6e-06 55.5 72 41.7
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 4.7e-06 55.1 88 37.5
TAR374G1311 Trochodendron aralioides HOM05D005523 ORTHO05D007089 4.7e-06 55.1 59 47.5
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 6.2e-06 54.7 72 41.7
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 8.1e-06 54.3 72 38.9


User provided reference genes

Program Settings