Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G123400 Carya illinoinensis HOM05D003865 ORTHO05D004466 3.4e-35 151.0 69 100.0
Eucgr.F01087 Eucalyptus grandis HOM05D003865 ORTHO05D004466 1.2e-32 142.5 69 91.3
EL10Ac9g20679 Beta vulgaris HOM05D003865 ORTHO05D004466 1.6e-32 142.1 69 89.9
CANSAT64G1248 Cannabis sativa HOM05D003865 ORTHO05D004466 6.0e-32 140.2 69 91.3
Cc00_g29860 Coffea canephora HOM05D003865 ORTHO05D004466 6.0e-32 140.2 69 89.9
Sed0011440 Sechium edule HOM05D003865 ORTHO05D004466 7.8e-32 139.8 69 88.4
CANSAT11G1994 Cannabis sativa HOM05D003865 ORTHO05D004466 1.3e-31 139.0 69 87.0
CSS0011087 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.7e-31 138.7 67 86.6
CSS0044246 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.7e-31 138.7 67 86.6
Hma1.2p1_1143F.1_g261110 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 3.9e-31 137.5 69 85.5
Prupe.4G187900 Prunus persica HOM05D003865 ORTHO05D004466 3.9e-31 137.5 69 85.5
CSS0037327 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 5.1e-31 137.1 69 89.9
Cfa014557 Carpinus fangiana HOM05D003865 ORTHO05D004466 5.1e-31 137.1 67 89.6
Migut.H01032 Erythranthe guttata HOM05D003865 ORTHO05D004466 5.1e-31 137.1 69 87.0
TWI18G0639 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 5.1e-31 137.1 67 88.1
Hma1.2p1_1143F.1_g261120 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 6.6e-31 136.7 69 84.1
PGR083G1332 Punica granatum HOM05D003865 ORTHO05D004466 6.6e-31 136.7 69 87.0
Sed0016537 Sechium edule HOM05D003865 ORTHO05D004466 6.6e-31 136.7 69 85.5
ClCG02G017420 Citrullus lanatus HOM05D003865 ORTHO05D004466 8.6e-31 136.3 69 85.5
Prupe.3G233100 Prunus persica HOM05D003865 ORTHO05D004466 8.6e-31 136.3 69 88.4
Ciclev10017406m.g Citrus clementina HOM05D003865 ORTHO05D004466 1.1e-30 136.0 69 87.0
CsaV3_7G004170 Cucumis sativus L. HOM05D003865 ORTHO05D004466 1.1e-30 136.0 69 87.0
Gohir.D02G182200 Gossypium hirsutum HOM05D003865 ORTHO05D004466 1.5e-30 135.6 69 87.0
Gorai.005G204700 Gossypium raimondii HOM05D003865 ORTHO05D004466 1.5e-30 135.6 69 87.0
Potri.019G104100 Populus trichocarpa HOM05D003865 ORTHO05D004466 1.5e-30 135.6 69 87.0
Potri.019G104300 Populus trichocarpa HOM05D003865 ORTHO05D004466 1.5e-30 135.6 69 87.0
TWI36G0902 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 1.5e-30 135.6 69 88.4
CiPaw.03G171100 Carya illinoinensis HOM05D003865 ORTHO05D004466 1.9e-30 135.2 69 88.4
Sopen07g028410 Solanum pennellii HOM05D003865 ORTHO05D004466 1.9e-30 135.2 69 85.5
Duzib248G0431 Durio zibethinus HOM05D003865 ORTHO05D004466 2.5e-30 134.8 69 87.0
MELO3C013523.2 Cucumis melo HOM05D003865 ORTHO05D004466 3.3e-30 134.4 69 85.5
Glyma.12G201800 Glycine max HOM05D003865 ORTHO05D004466 4.3e-30 134.0 68 86.8
Thecc.07G074300 Theobroma cacao HOM05D003865 ORTHO05D004466 4.3e-30 134.0 69 84.1
Duzib132G0908 Durio zibethinus HOM05D003865 ORTHO05D004466 5.6e-30 133.7 69 85.5
Lsat_1_v5_gn_8_131501 Lactuca sativa HOM05D003865 ORTHO05D004466 5.6e-30 133.7 69 84.1
Solyc07g054470.1 Solanum lycopersicum HOM05D003865 ORTHO05D004466 5.6e-30 133.7 69 84.1
Hma1.2p1_0213F.1_g090470 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 7.3e-30 133.3 69 87.0
MD09G1091900 Malus domestica HOM05D003865 ORTHO05D004466 7.3e-30 133.3 69 87.0
MD11G1238900 Malus domestica HOM05D003865 ORTHO05D004466 7.3e-30 133.3 69 81.2
Phvul.005G085500 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 7.3e-30 133.3 69 87.0
Phvul.005G107201 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 7.3e-30 133.3 68 83.8
RcHm_v2.0_Chr5g0035051 Rosa chinensis HOM05D003865 ORTHO05D004466 7.3e-30 133.3 69 82.6
BcaB07g33385 Brassica carinata HOM05D003865 ORTHO05D004466 9.5e-30 132.9 69 81.2
A06p01500 Brassica napus HOM05D003865 ORTHO05D004466 9.5e-30 132.9 69 81.2
BolC6t35932H Brassica oleracea HOM05D003865 ORTHO05D004466 9.5e-30 132.9 69 81.2
BraA06t23371Z Brassica rapa HOM05D003865 ORTHO05D004466 9.5e-30 132.9 69 81.2
Lsat_1_v5_gn_8_131640 Lactuca sativa HOM05D003865 ORTHO05D004466 9.5e-30 132.9 67 85.1
Lalb_Chr22g0356421 Lupinus albus HOM05D003865 ORTHO05D004466 9.5e-30 132.9 68 82.4
Ca_01531_v3 Cicer arietinum L. HOM05D003865 ORTHO05D004466 1.2e-29 132.5 67 83.6
COL.COLO4_09463 Corchorus olitorius HOM05D003865 ORTHO05D004466 1.2e-29 132.5 69 82.6
BcaC08g43469 Brassica carinata HOM05D003865 ORTHO05D004466 2.1e-29 131.7 69 79.7
C06p08510 Brassica napus HOM05D003865 ORTHO05D004466 2.1e-29 131.7 69 79.7
CSS0035059 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 2.1e-29 131.7 67 85.1
Glyma.12G220500 Glycine max HOM05D003865 ORTHO05D004466 2.1e-29 131.7 69 87.0
Lj3g0025843 Lotus japonicus HOM05D003865 ORTHO05D004466 2.1e-29 131.7 69 84.1
QL08p037564 Quercus lobata HOM05D003865 ORTHO05D004466 2.1e-29 131.7 68 85.3
Sc06g0009210 Simmondsia chinensis HOM05D003865 ORTHO05D004466 2.1e-29 131.7 69 88.4
PGSC0003DMG400018392 Solanum tuberosum HOM05D003865 ORTHO05D004466 2.1e-29 131.7 69 82.6
Manes.15G084300 Manihot esculenta HOM05D003865 ORTHO05D004466 2.8e-29 131.3 69 82.6
Cc05_g12570 Coffea canephora HOM05D003865 ORTHO05D004466 3.6e-29 131.0 69 81.2
Glyma.13G300400 Glycine max HOM05D003865 ORTHO05D004466 3.6e-29 131.0 68 83.8
MBI18_g32892_MAGBIO Magnolia biondii HOM05D003865 ORTHO05D004466 3.6e-29 131.0 69 85.5
Potri.011G124800 Populus trichocarpa HOM05D003865 ORTHO05D004466 3.6e-29 131.0 69 81.2
PGR142G1950 Punica granatum HOM05D003865 ORTHO05D004466 3.6e-29 131.0 69 85.5
HanXRQChr17g0554211 Helianthus annuus HOM05D003865 ORTHO05D004466 4.7e-29 130.6 69 84.1
TWI75G0545 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 4.7e-29 130.6 69 82.6
MD03G1221400 Malus domestica HOM05D003865 ORTHO05D004466 6.2e-29 130.2 69 81.2
Glyma.12G148300 Glycine max HOM05D003865 ORTHO05D004466 8.1e-29 129.8 69 82.6
Sopen07g031650 Solanum pennellii HOM05D003865 ORTHO05D004466 8.1e-29 129.8 69 79.7
CiPaw.11G174800 Carya illinoinensis HOM05D003865 ORTHO05D004466 1.1e-28 129.4 69 81.2
TWI39G0307 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 1.1e-28 129.4 67 82.1
CARHR043080 Cardamine hirsuta HOM05D003865 ORTHO05D004466 1.4e-28 129.0 69 76.8
Thhalv10012262m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 1.8e-28 128.6 69 75.4
Gorai.009G432200 Gossypium raimondii HOM05D003865 ORTHO05D004466 1.8e-28 128.6 69 81.2
Lalb_Chr19g0134391 Lupinus albus HOM05D003865 ORTHO05D004466 1.8e-28 128.6 69 81.2
Nn1g06711 Nelumbo nucifera HOM05D003865 ORTHO05D004466 1.8e-28 128.6 69 82.6
Eucgr.K00940 Eucalyptus grandis HOM05D003865 ORTHO05D004466 2.3e-28 128.3 69 87.0
Glyma.06G249600 Glycine max HOM05D003865 ORTHO05D004466 2.3e-28 128.3 69 81.2
Solyc07g063470.1 Solanum lycopersicum HOM05D003865 ORTHO05D004466 2.3e-28 128.3 69 78.3
Carub.0001s4201 Capsella rubella HOM05D003865 ORTHO05D004466 3.1e-28 127.9 69 76.8
Duzib268G1549 Durio zibethinus HOM05D003865 ORTHO05D004466 3.1e-28 127.9 69 78.3
Manes.12G087700 Manihot esculenta HOM05D003865 ORTHO05D004466 3.1e-28 127.9 67 80.6
GSVIVG01030567001 Vitis vinifera HOM05D003865 ORTHO05D004466 4.0e-28 127.5 64 85.9
AT1G52855 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 5.2e-28 127.1 69 76.8
Ciclev10010786m.g Citrus clementina HOM05D003865 ORTHO05D004466 6.8e-28 126.7 69 82.6
Glyma.13G281000 Glycine max HOM05D003865 ORTHO05D004466 6.8e-28 126.7 69 85.5
Potri.013G145100 Populus trichocarpa HOM05D003865 ORTHO05D004466 6.8e-28 126.7 69 82.6
TPR.G32874 Trifolium pratense HOM05D003865 ORTHO05D004466 6.8e-28 126.7 69 81.2
Cpa.g.sc34.113 Carica papaya HOM05D003865 ORTHO05D004466 8.9e-28 126.3 67 82.1
PGSC0003DMG400019299 Solanum tuberosum HOM05D003865 ORTHO05D004466 8.9e-28 126.3 69 78.3
TPR.G35550 Trifolium pratense HOM05D003865 ORTHO05D004466 1.2e-27 125.9 67 83.6
Manes.03G115200 Manihot esculenta HOM05D003865 ORTHO05D004466 2.0e-27 125.2 69 78.3
MD17G1081800 Malus domestica HOM05D003865 ORTHO05D004466 2.6e-27 124.8 69 82.6
THA.LOC109116854 Tarenaya hassleriana HOM05D003865 ORTHO05D004466 2.6e-27 124.8 69 75.4
Medtr2g090110 Medicago truncatula HOM05D003865 ORTHO05D004466 3.4e-27 124.4 67 82.1
Potri.001G405400 Populus trichocarpa HOM05D003865 ORTHO05D004466 3.4e-27 124.4 69 78.3
BraA01t03904Z Brassica rapa HOM05D003865 ORTHO05D004466 4.4e-27 124.0 69 76.8
HanXRQChr17g0559351 Helianthus annuus HOM05D003865 ORTHO05D004466 4.4e-27 124.0 69 78.3
Hma1.2p1_1053F.1_g252410 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 5.8e-27 123.6 69 79.7
VMungo1127G2113 Vigna mungo HOM05D003865 ORTHO05D004466 5.8e-27 123.6 67 80.6
BcaC09g48519 Brassica carinata HOM05D003865 ORTHO05D004466 9.9e-27 122.9 69 75.4
CSS0032128 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 9.9e-27 122.9 67 83.6
HanXRQChr17g0559361 Helianthus annuus HOM05D003865 ORTHO05D004466 9.9e-27 122.9 69 76.8
Cfa020526 Carpinus fangiana HOM05D003865 ORTHO05D004466 1.3e-26 122.5 67 76.1
Nn1g03940 Nelumbo nucifera HOM05D003865 ORTHO05D004466 1.3e-26 122.5 69 81.2
Phvul.011G148500 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 1.3e-26 122.5 67 80.6
AT3G15534 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 1.7e-26 122.1 69 76.8
RcHm_v2.0_Chr2g0162101 Rosa chinensis HOM05D003865 ORTHO05D004466 1.7e-26 122.1 67 83.6
HanXRQChr05g0156551 Helianthus annuus HOM05D003865 ORTHO05D004466 2.2e-26 121.7 69 78.3
CSS0031855 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 2.9e-26 121.3 69 69.6
Gohir.D01G015600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 2.9e-26 121.3 69 79.7
Gorai.002G017300 Gossypium raimondii HOM05D003865 ORTHO05D004466 2.9e-26 121.3 69 79.7
BcaB04g20919 Brassica carinata HOM05D003865 ORTHO05D004466 3.8e-26 120.9 69 73.9
C01p48910 Brassica napus HOM05D003865 ORTHO05D004466 3.8e-26 120.9 69 73.9
BolC1t04854H Brassica oleracea HOM05D003865 ORTHO05D004466 3.8e-26 120.9 69 73.9
CSS0016755 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 4.9e-26 120.6 69 69.6
Gohir.A01G015600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 4.9e-26 120.6 69 79.7
Duzib170G0518 Durio zibethinus HOM05D003865 ORTHO05D004466 6.4e-26 120.2 69 79.7
Gohir.A01G067400 Gossypium hirsutum HOM05D003865 ORTHO05D004466 6.4e-26 120.2 69 78.3
Gohir.D01G054600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 6.4e-26 120.2 69 78.3
Gorai.002G074500 Gossypium raimondii HOM05D003865 ORTHO05D004466 6.4e-26 120.2 69 78.3
Lsat_1_v5_gn_5_7081 Lactuca sativa HOM05D003865 ORTHO05D004466 6.4e-26 120.2 69 73.9
Migut.M00867 Erythranthe guttata HOM05D003865 ORTHO05D004466 8.4e-26 119.8 67 76.1
HanXRQChr05g0156511 Helianthus annuus HOM05D003865 ORTHO05D004466 1.1e-25 119.4 69 76.8
unitig_0.g2049 Utricularia gibba HOM05D003865 ORTHO05D004466 1.4e-25 119.0 68 73.5
A05p33870 Brassica napus HOM05D003865 ORTHO05D004466 1.9e-25 118.6 69 72.5
ATR0191G001 Amborella trichopoda HOM05D003865 ORTHO05D004466 2.4e-25 118.2 69 78.3
BcaC05g28963 Brassica carinata HOM05D003865 ORTHO05D004466 3.2e-25 117.9 69 71.0
C05p51570 Brassica napus HOM05D003865 ORTHO05D004466 3.2e-25 117.9 69 71.0
BolC5t33845H Brassica oleracea HOM05D003865 ORTHO05D004466 3.2e-25 117.9 69 71.0
Aa31LG8G17640 Aethionema arabicum HOM05D003865 ORTHO05D004466 4.1e-25 117.5 69 73.9
BcaB06g29589 Brassica carinata HOM05D003865 ORTHO05D004466 4.1e-25 117.5 69 72.5
Psat2g056680 Pisum sativum HOM05D003865 ORTHO05D004466 4.1e-25 117.5 69 78.3
PGSC0003DMG400025047 Solanum tuberosum HOM05D003865 ORTHO05D004466 4.1e-25 117.5 67 73.1
CARHR090600 Cardamine hirsuta HOM05D003865 ORTHO05D004466 7.1e-25 116.7 69 72.5
HanXRQChr08g0235631 Helianthus annuus HOM05D003865 ORTHO05D004466 1.2e-24 115.9 69 72.5
Carub.0003s1527 Capsella rubella HOM05D003865 ORTHO05D004466 1.6e-24 115.5 69 73.9
Thhalv10021922m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 2.7e-24 114.8 69 71.0
Migut.O00868 Erythranthe guttata HOM05D003865 ORTHO05D004466 4.6e-24 114.0 67 73.1
BcaC07g41193 Brassica carinata HOM05D003865 ORTHO05D004466 1.0e-23 112.8 69 73.9
C08p41990 Brassica napus HOM05D003865 ORTHO05D004466 1.0e-23 112.8 69 73.9
BolC8t51762H Brassica oleracea HOM05D003865 ORTHO05D004466 1.0e-23 112.8 69 73.9
Lsat_1_v5_gn_9_85200 Lactuca sativa HOM05D003865 ORTHO05D004466 1.0e-23 112.8 67 73.1
Sc03g0009670 Simmondsia chinensis HOM05D003865 ORTHO05D004466 1.0e-23 112.8 69 71.0
EL10Ac4g08086 Beta vulgaris HOM05D003865 ORTHO05D004466 1.3e-23 112.5 67 73.1
MELO3C016544.2 Cucumis melo HOM05D003865 ORTHO05D004466 1.7e-23 112.1 69 69.6
AL3G54020 Arabidopsis lyrata HOM05D003865 ORTHO05D004466 2.3e-23 111.7 69 72.5
BcaB08g34942 Brassica carinata HOM05D003865 ORTHO05D004466 2.3e-23 111.7 69 72.5
BraA09t41256Z Brassica rapa HOM05D003865 ORTHO05D004466 2.3e-23 111.7 69 72.5
Sp3g34080 Schrenkiella parvula HOM05D003865 ORTHO05D004466 2.3e-23 111.7 69 72.5
BcaC06g36774 Brassica carinata HOM05D003865 ORTHO05D004466 3.0e-23 111.3 69 72.5
BolC7t40459H Brassica oleracea HOM05D003865 ORTHO05D004466 3.0e-23 111.3 69 72.5
AT2G20835 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 3.9e-23 110.9 69 72.5
CARHR111560 Cardamine hirsuta HOM05D003865 ORTHO05D004466 5.1e-23 110.5 69 71.0
Sp1g39430 Schrenkiella parvula HOM05D003865 ORTHO05D004466 5.1e-23 110.5 61 73.8
Carub.0003s3548 Capsella rubella HOM05D003865 ORTHO05D004466 8.6e-23 109.8 69 71.0
Thhalv10002196m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 1.1e-22 109.4 69 71.0
unitig_899.g15557 Utricularia gibba HOM05D003865 ORTHO05D004466 1.1e-22 109.4 67 68.7
Gohir.A03G159100 Gossypium hirsutum HOM05D003865 ORTHO05D004466 5.6e-22 107.1 56 82.1
Os07g0564200 Oryza sativa ssp. japonica HOM05D003865 ORTHO05D004466 1.6e-21 105.5 69 72.5
Peaxi162Scf00007g02826 Petunia axillaris HOM05D003865 ORTHO05D004466 1.6e-21 105.5 56 82.1
THA.LOC109117138 Tarenaya hassleriana HOM05D003865 ORTHO05D004466 3.6e-21 104.4 69 68.1
BraA05t22209Z Brassica rapa HOM05D003865 ORTHO05D004466 6.2e-21 103.6 70 65.7
Actinidia12448 Actinidia chinensis HOM05D003865 ORTHO05D004466 1.1e-20 102.8 57 80.7
Zm00001eb324400 Zea mays HOM05D003865 ORTHO05D004466 6.9e-20 100.1 69 68.1
DCAR_009979 Daucus carota HOM05D003865 ORTHO05D004466 1.2e-19 99.4 55 72.7
CsaV3_3G006060 Cucumis sativus L. HOM05D003865 ORTHO05D004466 2.0e-19 98.6 62 66.1
Sed0025956 Sechium edule HOM05D003865 ORTHO05D004466 3.4e-19 97.8 67 62.7
A09p58700 Brassica napus HOM05D003865 ORTHO05D004466 7.6e-19 96.7 60 71.7
Manes.13G150400 Manihot esculenta HOM05D003865 ORTHO05D004466 9.9e-19 96.3 48 91.7
GSVIVG01014413001 Vitis vinifera HOM05D003865 ORTHO05D004466 4.2e-17 90.9 44 93.2
DCAR_013078 Daucus carota HOM05D003865 ORTHO05D004466 1.3e-15 85.9 50 70.0
Oeu058398.1 Olea europaea HOM05D003865 ORTHO05D004466 9.6e-14 79.7 41 90.2
FAN21G1589 Fragaria x ananassa HOM05D003865 ORTHO05D004466 1.4e-12 75.9 46 73.9
Mapoly0067s0090 Marchantia polymorpha HOM05D003865 ORTHO05D004466 2.4e-12 75.1 64 48.4
Gohir.D05G360466 Gossypium hirsutum HOM05D003865 ORTHO05D004466 1.3e-10 69.3 41 75.6
C07p00070 Brassica napus HOM05D028728 ORTHO05D033255 3.2e-09 64.7 38 71.1
MELO3C011187.2 Cucumis melo HOM05D002778 ORTHO05D003112 5.1e-07 57.4 59 37.3
Sed0006590 Sechium edule HOM05D002778 ORTHO05D003112 1.1e-06 56.2 59 35.6
Eucgr.C02014 Eucalyptus grandis HOM05D002778 ORTHO05D003112 1.5e-06 55.8 64 39.1
MD15G1107300 Malus domestica HOM05D002778 ORTHO05D003112 1.5e-06 55.8 63 31.7
Pp3c22_11210 Physcomitrium patens HOM05D003865 ORTHO05D004466 1.5e-06 55.8 67 38.8
CiPaw.07G212100 Carya illinoinensis HOM05D002778 ORTHO05D003112 2.5e-06 55.1 59 37.3
Thhalv10016058m.g Eutrema salsugineum HOM05D002778 ORTHO05D003112 5.6e-06 53.9 60 38.3
Solyc02g081560.1 Solanum lycopersicum HOM05D002778 ORTHO05D003112 5.6e-06 53.9 59 35.6
RcHm_v2.0_Chr6g0305041 Rosa chinensis HOM05D002778 ORTHO05D003112 7.4e-06 53.5 59 33.9
Aa31LG3G16440 Aethionema arabicum HOM05D002778 ORTHO05D003112 9.6e-06 53.1 60 36.7


User provided reference genes

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