Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G118600 Carya illinoinensis HOM05D007783 ORTHO05D009740 1.1e-28 130.2 126 100.0
CiPaw.03G163700 Carya illinoinensis HOM05D007783 ORTHO05D009740 1.8e-18 96.3 53 84.9
Cfa014450 Carpinus fangiana HOM05D007783 ORTHO05D009740 2.6e-17 92.4 52 84.6
Sed0000870 Sechium edule HOM05D007783 ORTHO05D009740 3.4e-17 92.0 47 91.5
Prupe.3G221700 Prunus persica HOM05D007783 ORTHO05D009740 2.9e-16 89.0 55 81.8
Cfa021131 Carpinus fangiana HOM05D007783 ORTHO05D009740 4.9e-16 88.2 53 81.1
Cfa021551 Carpinus fangiana HOM05D007783 ORTHO05D009740 4.9e-16 88.2 53 83.0
QL08p033993 Quercus lobata HOM05D007783 ORTHO05D009740 6.4e-16 87.8 50 84.0
Cfa014449 Carpinus fangiana HOM05D007783 ORTHO05D009740 1.4e-15 86.7 54 81.5
FvH4_6g43650 Fragaria vesca HOM05D007783 ORTHO05D009740 1.9e-15 86.3 54 79.6
FAN05G3706 Fragaria x ananassa HOM05D007783 ORTHO05D009740 1.9e-15 86.3 54 79.6
FAN09G3630 Fragaria x ananassa HOM05D007783 ORTHO05D009740 1.9e-15 86.3 54 79.6
Thecc.02G163100 Theobroma cacao HOM05D007783 ORTHO05D009740 1.9e-15 86.3 47 87.2
Cpa.g.sc8.247 Carica papaya HOM05D007783 ORTHO05D009740 9.3e-15 84.0 52 73.1
Ciclev10017097m.g Citrus clementina HOM05D007783 ORTHO05D009740 9.3e-15 84.0 49 79.6
FAN14G2245 Fragaria x ananassa HOM05D007783 ORTHO05D009740 9.3e-15 84.0 54 77.8
Sed0005014 Sechium edule HOM05D007783 ORTHO05D009740 1.2e-14 83.6 47 83.0
ClCG02G001700 Citrullus lanatus HOM05D000001 ORTHO05D000003 2.1e-14 82.8 47 80.9
MELO3C018795.2 Cucumis melo HOM05D007783 ORTHO05D009740 2.1e-14 82.8 47 80.9
Dinv10909 Davidia involucrata HOM05D007783 ORTHO05D009740 7.9e-14 80.9 45 80.0
Gohir.A12G135100 Gossypium hirsutum HOM05D007783 ORTHO05D009740 1.0e-13 80.5 47 78.7
COL.COLO4_13003 Corchorus olitorius HOM05D007783 ORTHO05D009740 1.7e-13 79.7 47 76.6
RcHm_v2.0_Chr2g0160271 Rosa chinensis HOM05D007783 ORTHO05D009740 2.3e-13 79.3 53 75.5
Gohir.D12G138800 Gossypium hirsutum HOM05D007783 ORTHO05D009740 3.0e-13 79.0 45 82.2
Gorai.008G150200 Gossypium raimondii HOM05D007783 ORTHO05D009740 3.0e-13 79.0 45 82.2
Peaxi162Scf00007g01310 Petunia axillaris HOM05D007783 ORTHO05D009740 5.1e-13 78.2 45 80.0
TWI36G1428 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 5.1e-13 78.2 48 79.2
Actinidia30505 Actinidia chinensis HOM05D007783 ORTHO05D009740 8.7e-13 77.4 50 68.0
Nn1g06962 Nelumbo nucifera HOM05D007783 ORTHO05D009740 8.7e-13 77.4 46 73.9
Manes.07G029300 Manihot esculenta HOM05D007783 ORTHO05D009740 1.1e-12 77.0 52 78.8
Manes.10G111600 Manihot esculenta HOM05D007783 ORTHO05D009740 1.5e-12 76.6 47 80.9
Nitab4.5_0002949g0070 Nicotiana tabacum HOM05D007783 ORTHO05D009740 2.5e-12 75.9 45 77.8
Nitab4.5_0017430g0010 Nicotiana tabacum HOM05D007783 ORTHO05D009740 2.5e-12 75.9 45 77.8
Gohir.D04G147200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 3.3e-12 75.5 53 71.7
Gorai.012G133100 Gossypium raimondii HOM05D007783 ORTHO05D009740 3.3e-12 75.5 53 71.7
Sabra17G0027500 Salix brachista HOM05D007783 ORTHO05D009740 3.3e-12 75.5 43 81.4
TWI18G0657 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 3.3e-12 75.5 48 75.0
Oeu041963.1 Olea europaea HOM05D007783 ORTHO05D009740 5.6e-12 74.7 54 68.5
Aqoxy4G02125 Aquilegia oxysepala HOM05D007783 ORTHO05D009740 7.4e-12 74.3 51 68.6
CSS0046432 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 7.4e-12 74.3 51 70.6
Rhsim06G0156700 Rhododendron simsii HOM05D000213 ORTHO05D009740 7.4e-12 74.3 45 75.6
Solyc07g052680.1 Solanum lycopersicum HOM05D007783 ORTHO05D009740 9.6e-12 73.9 46 82.6
Sopen07g026300 Solanum pennellii HOM05D007783 ORTHO05D009740 9.6e-12 73.9 46 82.6
PGSC0003DMG400026167 Solanum tuberosum HOM05D007783 ORTHO05D009740 9.6e-12 73.9 46 82.6
CSS0007715 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 1.3e-11 73.6 47 74.5
Gohir.A04G107200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 1.3e-11 73.6 46 78.3
Potri.007G120101 Populus trichocarpa HOM05D007783 ORTHO05D009740 1.6e-11 73.2 47 74.5
CANSAT64G1524 Cannabis sativa HOM05D007783 ORTHO05D009740 2.1e-11 72.8 48 77.1
Cc00_g19250 Coffea canephora HOM05D007783 ORTHO05D009740 3.6e-11 72.0 47 74.5
Oeu011075.1 Olea europaea HOM05D007783 ORTHO05D009740 2.4e-10 69.3 54 63.0
Lsat_1_v5_gn_8_129821 Lactuca sativa HOM05D007783 ORTHO05D009740 3.1e-10 68.9 46 71.7
MSTRG.12290 Avicennia marina HOM05D007783 ORTHO05D009740 4.0e-10 68.6 51 70.6
HanXRQChr17g0563901 Helianthus annuus HOM05D007783 ORTHO05D009740 5.3e-10 68.2 46 69.6
Migut.H01214 Erythranthe guttata HOM05D007783 ORTHO05D009740 6.9e-10 67.8 46 73.9
Lj3g0010205 Lotus japonicus HOM05D007783 ORTHO05D009740 6.9e-10 67.8 55 65.5
CDE05G0218 Ceratophyllum demersum HOM05D007783 ORTHO05D009740 2.0e-09 66.2 53 60.4
Lsat_1_v5_gn_3_43341 Lactuca sativa HOM05D007783 ORTHO05D009740 2.6e-09 65.9 53 58.5
Glyma.13G305400 Glycine max HOM05D007783 ORTHO05D009740 3.4e-09 65.5 46 71.7
Sp3g19900 Schrenkiella parvula HOM05D007783 ORTHO05D009740 5.8e-09 64.7 47 63.8
C05p41370 Brassica napus HOM05D007783 ORTHO05D009740 9.9e-09 63.9 51 58.8
THA.LOC104802538 Tarenaya hassleriana HOM05D007783 ORTHO05D009740 9.9e-09 63.9 45 66.7
Sabra07G0097600 Salix brachista HOM05D007783 ORTHO05D009740 2.2e-08 62.8 46 71.7
Sc21g0001790 Simmondsia chinensis HOM05D007783 ORTHO05D009740 2.2e-08 62.8 51 56.9
Medtr2g089010 Medicago truncatula HOM05D007783 ORTHO05D009740 2.9e-08 62.4 47 70.2
EL10Ac3g05472 Beta vulgaris HOM05D007783 ORTHO05D009740 3.8e-08 62.0 41 68.3
A01p33040 Brassica napus HOM05D007783 ORTHO05D009740 3.8e-08 62.0 51 56.9
C01p42180 Brassica napus HOM05D007783 ORTHO05D009740 3.8e-08 62.0 51 56.9
BolC1t04180H Brassica oleracea HOM05D007783 ORTHO05D009740 3.8e-08 62.0 51 56.9
BraA01t03426Z Brassica rapa HOM05D007783 ORTHO05D009740 3.8e-08 62.0 51 56.9
Carub.0003s2223 Capsella rubella HOM05D007783 ORTHO05D009740 3.8e-08 62.0 52 57.7
Phvul.005G112200 Phaseolus vulgaris HOM05D007783 ORTHO05D009740 4.9e-08 61.6 53 62.3
Psat5g265520 Pisum sativum HOM05D007783 ORTHO05D009740 4.9e-08 61.6 52 59.6
Ca_01568_v3 Cicer arietinum L. HOM05D007783 ORTHO05D009740 8.4e-08 60.8 49 63.3
DCAR_012961 Daucus carota HOM05D007783 ORTHO05D009740 8.4e-08 60.8 50 58.0
CARHR097930 Cardamine hirsuta HOM05D007783 ORTHO05D009740 1.1e-07 60.5 51 56.9
VMungo1080G1091 Vigna mungo HOM05D007783 ORTHO05D009740 1.1e-07 60.5 46 67.4
AL3G36260 Arabidopsis lyrata HOM05D007783 ORTHO05D009740 1.4e-07 60.1 47 59.6
AT3G22070 Arabidopsis thaliana HOM05D007783 ORTHO05D009740 1.4e-07 60.1 47 59.6
ECA246G5319 Erigeron canadensis HOM05D007783 ORTHO05D009740 3.2e-07 58.9 54 50.0
SHI10279 Sapria himalayana HOM05D007783 ORTHO05D009740 3.2e-07 58.9 52 57.7
Glyma.12G103000 Glycine max HOM05D007783 ORTHO05D009740 7.1e-07 57.8 51 54.9
VMungo0331G0946 Vigna mungo HOM05D007783 ORTHO05D009740 1.2e-06 57.0 46 60.9
Lalb_Chr19g0135631 Lupinus albus HOM05D007783 ORTHO05D009740 2.1e-06 56.2 53 56.6


User provided reference genes

Program Settings