Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 5.9e-172 607.4 309 100.0
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 6.4e-150 534.3 302 88.4
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 1.5e-146 523.1 301 87.0
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 5.2e-144 514.6 302 86.8
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 2.7e-140 502.3 302 83.8
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 3.9e-139 498.4 300 83.7
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 8.6e-139 497.3 302 82.5
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 1.1e-138 496.9 302 82.1
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 4.3e-138 495.0 302 82.1
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 1.2e-137 493.4 300 83.3
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 3.6e-137 491.9 302 83.4
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 1.8e-136 489.6 302 82.8
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 2.3e-136 489.2 302 82.1
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 4.0e-136 488.4 302 81.8
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 2.0e-135 486.1 301 81.4
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 2.6e-135 485.7 304 81.2
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 3.4e-135 485.3 300 82.0
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 7.6e-135 484.2 302 80.8
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 9.9e-135 483.8 312 79.5
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.3e-134 483.4 303 80.9
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.3e-134 483.4 303 80.9
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.7e-134 483.0 303 80.9
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 2.2e-134 482.6 302 80.5
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.2e-132 476.9 302 81.8
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 2.1e-132 476.1 302 81.8
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 4.6e-132 474.9 302 80.8
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 1.3e-131 473.4 302 79.8
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 8.6e-131 470.7 302 81.5
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.5e-130 469.9 302 79.8
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 1.9e-130 469.5 298 81.9
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 2.5e-130 469.2 303 79.5
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 7.3e-130 467.6 303 77.2
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 2.8e-129 465.7 302 79.5
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 4.7e-129 464.9 303 80.2
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.4e-128 462.6 305 79.7
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 6.8e-128 461.1 302 78.8
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 2.6e-127 459.1 302 78.5
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 5.8e-127 458.0 297 78.5
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 3.8e-126 455.3 299 77.6
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.8e-126 455.3 299 77.6
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 6.4e-126 454.5 302 76.5
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 8.4e-126 454.1 299 77.3
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.2e-125 452.2 299 76.9
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 6.0e-124 448.0 313 74.4
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 1.3e-123 446.8 300 77.0
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 1.7e-123 446.4 302 74.8
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 1.1e-122 443.7 295 76.9
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 2.5e-122 442.6 300 76.3
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 7.3e-122 441.0 302 76.2
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 9.6e-122 440.7 273 82.4
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 2.1e-121 439.5 297 75.8
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 4.0e-120 435.3 303 74.3
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 5.3e-120 434.9 303 74.9
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 9.0e-120 434.1 303 74.6
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 9.0e-120 434.1 303 74.9
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.6e-119 432.6 301 75.4
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 5.8e-119 431.4 300 73.3
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 1.3e-118 430.3 352 68.2
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.2e-118 429.5 297 76.4
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 6.4e-118 427.9 267 80.5
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 8.4e-118 427.6 298 75.2
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.1e-117 427.2 298 74.8
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 1.1e-117 427.2 299 75.6
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 1.4e-117 426.8 300 74.7
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.9e-117 426.4 299 75.3
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.9e-117 426.4 304 73.7
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 2.4e-117 426.0 268 80.2
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 3.2e-117 425.6 300 72.7
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 4.2e-117 425.2 300 72.0
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 1.6e-116 423.3 267 80.1
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 2.1e-116 422.9 300 71.7
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 3.5e-116 422.2 322 70.2
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 3.5e-116 422.2 300 72.7
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 4.6e-116 421.8 303 73.9
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 4.6e-116 421.8 268 79.5
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 7.9e-116 421.0 302 75.2
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 2.3e-115 419.5 303 72.9
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 5.1e-115 418.3 322 69.9
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 8.7e-115 417.5 298 72.8
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 3.3e-114 415.6 293 74.7
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 1.3e-113 413.7 303 73.3
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 4.8e-113 411.8 302 71.9
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 4.8e-113 411.8 303 71.3
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 6.2e-113 411.4 276 79.0
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 8.1e-113 411.0 302 71.9
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 1.1e-112 410.6 302 71.9
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.8e-112 409.8 305 72.1
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.8e-112 409.8 302 70.9
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 1.8e-112 409.8 307 71.7
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.5e-111 406.8 279 76.3
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 2.0e-111 406.4 290 74.5
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 2.6e-111 406.0 262 80.2
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 4.5e-111 405.2 304 72.0
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 4.5e-111 405.2 279 75.6
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 5.8e-111 404.8 304 71.1
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.2e-110 402.9 255 80.4
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 2.9e-110 402.5 290 73.4
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 6.4e-110 401.4 297 72.7
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 1.2e-108 397.1 291 73.9
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.2e-108 397.1 262 80.5
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 1.8e-107 393.3 305 71.1
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 3.0e-107 392.5 269 75.8
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.9e-106 389.8 300 68.7
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 2.5e-106 389.4 245 82.0
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 3.3e-106 389.0 247 80.2
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 4.3e-106 388.7 247 80.2
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 1.3e-105 387.1 247 79.8
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 4.8e-105 385.2 274 74.1
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 3.4e-103 379.0 246 78.5
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 5.8e-103 378.3 215 87.9
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 1.0e-102 377.5 321 65.4
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 4.2e-101 372.1 247 79.4
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 2.3e-99 366.3 255 74.9
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 4.3e-98 362.1 300 65.0
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 3.1e-96 355.9 243 77.8
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.7e-94 350.1 302 63.2
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.7e-94 350.1 219 81.7
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.0e-91 340.9 302 62.3
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 2.3e-91 339.7 286 65.0
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 6.7e-91 338.2 294 63.3
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 5.7e-90 335.1 224 78.6
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 1.3e-89 334.0 301 63.5
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 6.3e-89 331.6 281 65.8
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 1.0e-83 314.3 235 72.8
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 2.3e-83 313.2 246 68.3
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.3e-82 308.9 179 86.6
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.2e-79 300.8 179 83.2
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 2.0e-79 300.1 215 74.9
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 2.9e-78 296.2 257 63.0
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 1.9e-77 293.5 316 52.2
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 1.6e-76 290.4 324 50.0
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 3.9e-75 285.8 240 63.8
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 5.7e-74 282.0 267 59.9
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 1.2e-71 274.2 306 50.3
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 2.2e-70 270.0 282 56.0
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.5e-69 266.5 224 62.1
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 4.2e-69 265.8 232 61.2
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 5.7e-66 255.4 179 70.4
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 1.3e-65 254.2 177 70.1
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 2.5e-61 240.0 257 56.8
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 7.2e-61 238.4 163 74.2
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 9.4e-61 238.0 139 86.3
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 4.0e-59 232.6 205 63.9
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 1.0e-51 208.0 171 66.1
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.3e-49 201.1 158 67.1
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 1.8e-48 197.2 149 67.1
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 5.4e-48 195.7 222 45.9
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.9e-41 172.6 112 75.9
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 8.3e-41 171.8 120 78.3
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 3.5e-31 139.8 81 81.5
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 7.3e-29 132.1 82 80.5
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 1.2e-26 124.8 64 92.2
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.6e-20 103.2 97 55.7
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 5.2e-19 99.4 66 77.3
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.6e-15 87.8 115 52.2
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 3.5e-15 86.7 88 55.7
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.5e-13 80.5 53 73.6
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 7.3e-13 79.0 55 70.9
TAR636G0182 Trochodendron aralioides HOM05D004545 ORTHO05D005420 4.6e-07 59.7 79 46.8
BcaNung06412 Brassica carinata HOM05D004545 ORTHO05D095766 1.3e-06 58.2 122 36.1


User provided reference genes

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