Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 4.5e-45 184.1 87 100.0
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.2e-26 122.9 66 87.9
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 3.1e-25 118.2 66 84.8
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 3.1e-25 118.2 67 83.6
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 5.2e-25 117.5 66 83.3
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 5.2e-25 117.5 66 81.8
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 1.5e-24 115.9 67 83.6
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 2.0e-24 115.5 66 80.3
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 2.0e-24 115.5 66 78.8
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 2.0e-24 115.5 67 83.6
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 3.4e-24 114.8 66 80.3
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 5.8e-24 114.0 66 78.8
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 9.9e-24 113.2 66 83.3
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 9.9e-24 113.2 66 83.3
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 1.3e-23 112.8 66 83.3
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.3e-23 112.8 66 84.8
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 1.7e-23 112.5 66 81.8
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 2.2e-23 112.1 66 78.8
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 2.9e-23 111.7 66 80.3
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 2.9e-23 111.7 66 83.3
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 3.7e-23 111.3 68 77.9
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 4.9e-23 110.9 66 83.3
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 6.4e-23 110.5 66 80.3
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 6.4e-23 110.5 66 83.3
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.1e-22 109.8 68 76.5
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.1e-22 109.8 68 80.9
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.4e-22 109.4 66 77.3
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 1.4e-22 109.4 66 77.3
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.9e-22 109.0 66 78.8
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 2.4e-22 108.6 66 77.3
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 3.2e-22 108.2 66 83.3
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 4.1e-22 107.8 62 80.6
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 5.4e-22 107.5 69 78.3
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 5.4e-22 107.5 66 74.2
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 7.1e-22 107.1 66 77.3
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 7.1e-22 107.1 66 77.3
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 7.1e-22 107.1 66 74.2
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 9.2e-22 106.7 66 77.3
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 9.2e-22 106.7 68 79.4
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 2.1e-21 105.5 67 76.1
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.1e-21 105.5 69 76.8
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 2.1e-21 105.5 69 76.8
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 2.1e-21 105.5 66 81.8
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 2.1e-21 105.5 68 76.5
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 2.7e-21 105.1 66 77.3
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 2.7e-21 105.1 66 77.3
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 6.0e-21 104.0 67 73.1
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 7.8e-21 103.6 66 75.8
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 7.8e-21 103.6 76 69.7
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 7.8e-21 103.6 76 69.7
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 1.0e-20 103.2 66 72.7
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 1.0e-20 103.2 62 79.0
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 1.0e-20 103.2 66 75.8
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 1.0e-20 103.2 66 75.8
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 1.0e-20 103.2 66 75.8
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 1.0e-20 103.2 66 75.8
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.3e-20 102.8 67 76.1
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 1.3e-20 102.8 68 75.0
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.7e-20 102.4 66 77.3
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 1.7e-20 102.4 62 77.4
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 2.3e-20 102.1 66 72.7
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 3.0e-20 101.7 66 72.7
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 3.0e-20 101.7 66 72.7
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 3.9e-20 101.3 66 72.7
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 3.9e-20 101.3 66 72.7
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 6.6e-20 100.5 66 74.2
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 6.6e-20 100.5 66 71.2
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 6.6e-20 100.5 66 72.7
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 6.6e-20 100.5 66 71.2
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 6.6e-20 100.5 66 72.7
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 1.1e-19 99.8 66 72.7
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 1.1e-19 99.8 66 72.7
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.1e-19 99.8 66 74.2
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 1.5e-19 99.4 66 75.8
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 1.5e-19 99.4 66 72.7
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 1.9e-19 99.0 66 71.2
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 1.9e-19 99.0 66 69.7
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 1.9e-19 99.0 66 71.2
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 1.9e-19 99.0 66 71.2
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 1.9e-19 99.0 60 80.0
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 1.9e-19 99.0 66 71.2
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 4.3e-19 97.8 66 71.2
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 5.6e-19 97.4 66 72.7
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 7.3e-19 97.1 66 72.7
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 7.3e-19 97.1 66 72.7
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 7.3e-19 97.1 66 71.2
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 9.5e-19 96.7 66 68.2
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 4.7e-18 94.4 59 74.6
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 6.2e-18 94.0 71 67.6
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 1.1e-17 93.2 62 72.6
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 1.8e-17 92.4 66 71.2
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 5.2e-17 90.9 67 68.7
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 5.2e-17 90.9 56 80.4
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 6.8e-17 90.5 65 63.1
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 6.8e-17 90.5 65 63.1
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 6.8e-17 90.5 65 63.1
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 6.8e-17 90.5 65 63.1
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 6.8e-17 90.5 65 63.1
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 6.8e-17 90.5 66 74.2
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 6.8e-17 90.5 62 72.6
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 2.6e-16 88.6 63 68.3
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 4.4e-16 87.8 62 69.4
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 5.8e-16 87.4 57 73.7
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 2.9e-15 85.1 66 65.2
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 4.9e-15 84.3 56 73.2
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 2.4e-14 82.0 56 66.1
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 2.4e-14 82.0 66 59.1
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 9.2e-14 80.1 55 70.9
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 9.2e-14 80.1 54 70.4
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 1.2e-13 79.7 51 70.6
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 2.7e-13 78.6 51 72.5
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 3.5e-13 78.2 51 72.5
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 3.5e-13 78.2 53 69.8
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 3.5e-13 78.2 47 76.6
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 1.0e-12 76.6 47 78.7
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 1.3e-12 76.3 47 78.7
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.7e-12 75.9 49 73.5
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 1.7e-12 75.9 47 78.7
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 3.0e-12 75.1 48 72.9
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 3.0e-12 75.1 48 77.1
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 3.9e-12 74.7 47 72.3
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 5.1e-12 74.3 47 76.6
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 2.5e-11 72.0 48 72.9
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 4.3e-11 71.2 54 63.0
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 5.6e-11 70.9 48 70.8
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 5.6e-11 70.9 44 77.3
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 6.2e-10 67.4 47 70.2
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 1.1e-09 66.6 44 72.7
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 1.1e-09 66.6 47 70.2
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 5.3e-09 64.3 53 56.6
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 6.9e-09 63.9 44 70.5
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 2.0e-08 62.4 57 57.9
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 2.6e-08 62.0 64 51.6
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.9e-06 55.8 62 50.0
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.9e-06 55.8 62 50.0
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 3.2e-06 55.1 61 47.5
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 7.1e-06 53.9 56 53.6


User provided reference genes

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