Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 0.0e+00 1471.4 767 100.0
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 0.0e+00 1218.4 770 81.7
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 0.0e+00 1157.5 750 80.1
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 3.4e-309 1064.7 717 77.1
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 3.8e-305 1051.2 764 70.2
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 9.5e-304 1046.6 766 70.8
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 7.5e-301 1036.9 764 70.3
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 1.7e-297 1025.8 769 69.2
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 2.5e-296 1021.9 781 67.7
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 4.0e-294 1014.6 765 67.6
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 1.5e-293 1012.7 769 68.5
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 5.8e-293 1010.7 764 68.7
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.4e-291 1005.4 763 69.7
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 3.2e-291 1005.0 763 69.5
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 7.0e-291 1003.8 764 68.3
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 1.0e-289 1000.0 764 67.5
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 1.3e-289 999.6 764 68.3
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 3.9e-289 998.0 763 69.3
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.5e-288 995.3 780 67.8
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 3.6e-287 991.5 763 68.8
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 6.8e-286 987.3 769 66.3
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 6.4e-284 980.7 766 65.8
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 8.3e-284 980.3 768 65.5
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 1.4e-283 979.5 770 65.2
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 7.1e-283 977.2 769 66.7
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.7e-281 972.6 775 67.1
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 1.7e-281 972.6 769 65.5
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 1.2e-279 966.5 769 64.6
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 6.2e-279 964.1 718 69.5
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 4.4e-277 958.0 780 65.3
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 4.9e-276 954.5 766 65.3
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 1.1e-275 953.4 769 64.2
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.9e-275 952.6 770 64.4
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 3.9e-273 944.9 772 63.3
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 1.5e-272 943.0 769 64.2
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 3.6e-271 938.3 768 63.8
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 1.1e-270 936.8 772 63.1
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 1.4e-270 936.4 763 63.8
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 1.5e-269 932.9 811 62.0
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 3.8e-268 928.3 790 61.9
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 1.4e-267 926.4 767 63.2
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 5.4e-267 924.5 767 63.0
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 7.1e-267 924.1 770 62.1
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 9.3e-267 923.7 767 62.8
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 2.7e-266 922.2 768 63.3
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 6.0e-266 921.0 768 64.2
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 1.5e-264 916.4 767 62.7
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 1.9e-264 916.0 767 63.2
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 1.3e-263 913.3 765 62.0
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 2.4e-262 909.1 741 64.0
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 3.1e-262 908.7 789 61.0
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 9.0e-262 907.1 764 62.2
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 1.5e-261 906.4 790 61.1
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 2.9e-260 902.1 742 63.9
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 3.9e-257 891.7 764 61.6
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 9.6e-256 887.1 774 59.3
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 4.8e-255 884.8 769 59.6
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 1.4e-254 883.2 782 60.6
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 7.6e-253 877.5 769 60.9
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 3.8e-252 875.2 773 60.4
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 4.9e-252 874.8 785 59.7
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 4.2e-251 871.7 764 58.5
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 4.6e-250 868.2 765 61.2
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 7.4e-248 860.9 771 59.3
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 4.8e-247 858.2 693 64.4
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 2.4e-246 855.9 772 60.5
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 3.1e-246 855.5 769 57.1
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 4.0e-246 855.1 764 58.5
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 1.2e-245 853.6 772 58.5
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 1.0e-244 850.5 769 58.4
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 4.2e-243 845.1 766 57.6
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 4.2e-243 845.1 763 56.6
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 1.1e-240 837.0 735 60.7
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 5.7e-240 834.7 736 60.9
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 5.7e-240 834.7 768 59.0
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 1.4e-238 830.1 768 58.2
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 1.2e-237 827.0 772 59.2
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 1.5e-237 826.6 792 56.1
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 5.0e-236 821.6 572 73.1
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 4.6e-234 815.1 811 54.9
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 4.8e-231 805.1 573 70.5
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 1.2e-226 790.4 749 57.3
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 2.5e-224 782.7 740 59.6
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 2.2e-223 779.6 769 55.0
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 4.8e-223 778.5 571 69.4
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 3.1e-222 775.8 760 57.9
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 6.9e-222 774.6 566 71.0
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 1.2e-221 773.9 713 58.8
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 2.1e-218 763.1 569 68.9
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 7.9e-218 761.1 770 53.8
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 2.6e-216 756.1 569 68.7
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 6.3e-215 751.5 570 68.8
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 7.0e-214 748.0 766 54.2
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 1.1e-208 730.7 586 63.3
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 2.6e-208 729.6 766 50.7
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 2.4e-206 723.0 655 55.6
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 9.1e-206 721.1 516 71.5
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 4.5e-205 718.8 771 51.0
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 2.9e-204 716.1 634 59.8
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 1.8e-201 706.8 745 52.3
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 1.8e-201 706.8 572 62.9
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.0e-193 681.0 767 50.6
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 9.8e-184 647.9 528 62.7
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 8.6e-180 634.8 461 69.8
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.2e-178 630.9 530 63.0
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 5.8e-176 622.1 511 63.6
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 1.3e-172 610.9 769 46.2
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 2.8e-162 576.6 783 41.4
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.2e-157 561.2 533 55.5
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 2.3e-156 557.0 647 48.4
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 1.1e-137 495.0 439 57.4
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 4.2e-134 483.0 333 73.0
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 6.0e-133 479.2 495 53.5
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 1.8e-129 467.6 541 50.8
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 2.0e-120 437.6 326 68.4
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 3.1e-113 413.7 291 72.2
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 2.6e-112 410.6 285 71.9
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 4.1e-105 386.7 387 54.8
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 5.7e-99 366.3 817 30.0
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 1.0e-95 355.5 480 43.5
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 2.7e-93 347.4 290 61.7
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 1.5e-91 341.7 283 65.0
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 7.7e-88 329.3 229 71.6
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 2.8e-82 310.8 763 28.8
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 8.3e-82 309.3 745 29.3
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 1.2e-77 295.4 361 44.9
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 6.3e-74 283.1 177 79.7
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 1.4e-65 255.4 205 62.9
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 7.8e-64 249.6 204 60.8
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 6.4e-58 229.9 191 62.8
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 3.1e-52 211.1 637 25.7
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 1.3e-50 205.7 247 49.8
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 2.5e-46 191.4 250 44.4
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 1.3e-42 179.1 141 68.8
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.7e-42 178.7 419 32.7
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.1e-41 176.0 419 32.5
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 3.0e-39 167.9 192 47.9
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 2.0e-27 128.6 108 67.6
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 3.5e-24 117.9 85 64.7
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 2.3e-23 115.2 80 70.0
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 2.3e-23 115.2 88 61.4
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.6e-19 101.7 76 64.5
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 3.4e-19 101.3 147 38.8
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 7.6e-19 100.1 113 48.7
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 9.3e-17 93.2 219 32.0
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 6.7e-15 87.0 68 61.8
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 2.0e-11 75.5 87 39.1
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 1.1e-09 69.7 81 46.9
SHI10093 Sapria himalayana HOM05D004734 ORTHO05D006019 3.3e-06 58.2 73 45.2
arahy.Tifrunner.gnm1.ann1.RUY2TK Arachis hypogaea HOM05D005906 ORTHO05D007359 4.3e-06 57.8 35 80.0
Nitab4.5_0001356g0190 Nicotiana tabacum HOM05D000224 ORTHO05D001489 4.3e-06 57.8 146 28.8


User provided reference genes

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