Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G103600 Carya illinoinensis HOM05D008176 ORTHO05D004477 1.8e-78 295.8 147 100.0
CiPaw.03G145800 Carya illinoinensis HOM05D008176 ORTHO05D004477 9.7e-40 167.2 156 66.7
Haze_24851 Corylus avellana HOM05D008176 ORTHO05D004477 9.1e-38 160.6 156 59.0
QL06p048130 Quercus lobata HOM05D008176 ORTHO05D004477 2.1e-34 149.4 150 58.0
Cfa002600 Carpinus fangiana HOM05D008176 ORTHO05D004477 2.7e-29 132.5 157 51.0
COL.COLO4_27295 Corchorus olitorius HOM05D008176 ORTHO05D004477 9.5e-19 97.4 151 44.4
Thecc.01G095600 Theobroma cacao HOM05D008176 ORTHO05D004477 1.6e-18 96.7 148 45.9
Lj4g0008028 Lotus japonicus HOM05D008176 ORTHO05D004477 2.8e-18 95.9 125 45.6
Manes.12G129900 Manihot esculenta HOM05D008176 ORTHO05D004477 2.8e-18 95.9 146 45.9
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 4.7e-18 95.1 141 48.2
Ciclev10026640m.g Citrus clementina HOM05D008176 ORTHO05D004477 1.4e-17 93.6 160 43.1
Atru.chr3.1344 Acer truncatum HOM05D008176 ORTHO05D004477 5.2e-17 91.7 134 48.5
TPR.G6203 Trifolium pratense HOM05D008176 ORTHO05D004477 8.9e-17 90.9 135 45.2
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 5.7e-16 88.2 141 41.8
Medtr8g089920 Medicago truncatula HOM05D008176 ORTHO05D004477 7.5e-16 87.8 140 43.6
Duzib187G0825 Durio zibethinus HOM05D008176 ORTHO05D004477 1.3e-15 87.0 157 45.9
Potri.005G072000 Populus trichocarpa HOM05D008176 ORTHO05D004477 2.2e-15 86.3 137 43.1
Ca_08988_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 4.9e-15 85.1 133 41.4
Duzib264G0386 Durio zibethinus HOM05D008176 ORTHO05D004477 1.8e-14 83.2 159 42.1
Dinv13234 Davidia involucrata HOM05D008176 ORTHO05D004477 2.4e-14 82.8 134 45.5
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 2.4e-14 82.8 147 43.5
Phvul.002G260800 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 3.1e-14 82.4 133 41.4
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 5.4e-14 81.6 143 42.0
RcHm_v2.0_Chr2g0112381 Rosa chinensis HOM05D013332 ORTHO05D004477 7.0e-14 81.3 175 42.3
MSTRG.23362 Avicennia marina HOM05D008176 ORTHO05D004477 1.2e-13 80.5 142 45.1
Sabra07G0080300 Salix brachista HOM05D008176 ORTHO05D004477 1.2e-13 80.5 139 41.7
PGSC0003DMG400016149 Solanum tuberosum HOM05D008176 ORTHO05D004477 2.7e-13 79.3 143 41.3
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 2.7e-13 79.3 140 41.4
Glyma.08G133100 Glycine max HOM05D008176 ORTHO05D004477 3.5e-13 79.0 136 40.4
Psat7g056440 Pisum sativum HOM05D008176 ORTHO05D004477 3.5e-13 79.0 136 40.4
Peaxi162Scf00237g00201 Petunia axillaris HOM05D008176 ORTHO05D004477 4.5e-13 78.6 141 39.7
Gohir.A02G129700 Gossypium hirsutum HOM05D008176 ORTHO05D004477 5.9e-13 78.2 139 43.2
SalBow3G2508 Salvia bowleyana HOM05D029310 ORTHO05D004477 7.8e-13 77.8 138 42.0
SalBow3G3284 Salvia bowleyana HOM05D029310 ORTHO05D004477 7.8e-13 77.8 138 42.0
Sopen05g029890 Solanum pennellii HOM05D008176 ORTHO05D004477 7.8e-13 77.8 134 44.0
Nitab4.5_0000128g0240 Nicotiana tabacum HOM05D008176 ORTHO05D004477 1.0e-12 77.4 129 42.6
Nitab4.5_0012818g0010 Nicotiana tabacum HOM05D008176 ORTHO05D004477 1.7e-12 76.6 137 40.1
Solyc11g010250.1 Solanum lycopersicum HOM05D008176 ORTHO05D004477 1.7e-12 76.6 144 39.6
SGA_v2.0_scaffold108G30894 Striga asiatica HOM05D008176 ORTHO05D004477 2.3e-12 76.3 155 40.6
Gorai.003G041400 Gossypium raimondii HOM05D008176 ORTHO05D004477 2.9e-12 75.9 139 41.7
FAN23G0907 Fragaria x ananassa HOM05D013332 ORTHO05D004477 3.8e-12 75.5 171 39.8
Gohir.D03G040500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 3.8e-12 75.5 139 41.7
Glyma.05G175800 Glycine max HOM05D008176 ORTHO05D004477 5.0e-12 75.1 133 40.6
Manes.13G096700 Manihot esculenta HOM05D008176 ORTHO05D004477 5.0e-12 75.1 137 39.4
Medtr3g086830 Medicago truncatula HOM05D008176 ORTHO05D004477 6.6e-12 74.7 136 41.9
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 8.6e-12 74.3 147 38.8
PGSC0003DMG400016792 Solanum tuberosum HOM05D008176 ORTHO05D004477 8.6e-12 74.3 138 42.0
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.5e-11 73.6 147 38.8
FAN19G2695 Fragaria x ananassa HOM05D013332 ORTHO05D004477 1.5e-11 73.6 171 38.6
TPR.G16006 Trifolium pratense HOM05D008176 ORTHO05D004477 1.5e-11 73.6 138 39.9
Nn1g05455 Nelumbo nucifera HOM05D008046 ORTHO05D004477 2.5e-11 72.8 142 38.0
FAN28G1274 Fragaria x ananassa HOM05D013332 ORTHO05D004477 3.3e-11 72.4 171 39.2
VMungo1383G1959 Vigna mungo HOM05D008176 ORTHO05D004477 3.3e-11 72.4 120 42.5
Gohir.A11G051100 Gossypium hirsutum HOM05D008176 ORTHO05D004477 4.3e-11 72.0 166 39.2
Gorai.007G059700 Gossypium raimondii HOM05D008176 ORTHO05D004477 5.6e-11 71.6 165 38.2
Ca_16509_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 7.3e-11 71.2 135 40.7
FAN26G3011 Fragaria x ananassa HOM05D013332 ORTHO05D004477 1.6e-10 70.1 171 38.6
FvH4_1g20240 Fragaria vesca HOM05D013332 ORTHO05D004477 2.1e-10 69.7 171 36.8
Glyma.11G242100 Glycine max HOM05D008176 ORTHO05D004477 2.1e-10 69.7 137 37.2
Sc26g0000200 Simmondsia chinensis HOM05D013332 ORTHO05D004477 2.1e-10 69.7 140 37.9
Cpa.g.sc55.74 Carica papaya HOM05D008176 ORTHO05D004477 2.8e-10 69.3 152 35.5
Hma1.2p1_0019F.1_g013800 Hydrangea macrophylla HOM05D013332 ORTHO05D004477 2.8e-10 69.3 167 32.9
Potri.007G097000 Populus trichocarpa HOM05D008176 ORTHO05D004477 3.6e-10 68.9 132 39.4
Lalb_Chr11g0075471 Lupinus albus HOM05D008176 ORTHO05D004477 4.7e-10 68.6 137 37.2
Phvul.001G253900 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 8.0e-10 67.8 123 41.5
Oeu048965.1 Olea europaea HOM05D008046 ORTHO05D004477 1.0e-09 67.4 133 36.1
Psat5g090880 Pisum sativum HOM05D008176 ORTHO05D004477 1.0e-09 67.4 135 34.8
VMungo0251G0397 Vigna mungo HOM05D008176 ORTHO05D004477 1.0e-09 67.4 132 35.6
CANSAT01G0943 Cannabis sativa HOM05D013332 ORTHO05D004477 1.4e-09 67.0 155 34.8
Gohir.D11G054500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.8e-09 66.6 169 36.7
Glyma.18G015000 Glycine max HOM05D008176 ORTHO05D004477 2.3e-09 66.2 122 41.0
TWI53G0271 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 3.1e-09 65.9 142 35.9
CDE05G1898 Ceratophyllum demersum HOM05D000157 ORTHO05D000691 4.0e-09 65.5 125 37.6
Sc23g0000380 Simmondsia chinensis HOM05D008046 ORTHO05D004477 5.2e-09 65.1 156 36.5
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 8.9e-09 64.3 128 39.1
Aqoxy6G00716 Aquilegia oxysepala HOM05D008046 ORTHO05D004477 1.2e-08 63.9 140 35.7
Sopen05g029880 Solanum pennellii HOM05D008176 ORTHO05D004477 1.2e-08 63.9 133 39.1
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.0e-08 63.2 128 39.1
Sc03g0000170 Simmondsia chinensis HOM05D031888 ORTHO05D004477 2.0e-08 63.2 151 33.1
Thecc.08G102400 Theobroma cacao HOM05D008046 ORTHO05D004477 2.6e-08 62.8 144 36.8
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 3.4e-08 62.4 148 35.1
Lalb_Chr12g0203981 Lupinus albus HOM05D008176 ORTHO05D004477 4.4e-08 62.0 129 35.7
Gorai.007G235100 Gossypium raimondii HOM05D008176 ORTHO05D004477 5.8e-08 61.6 136 38.2
Sed0019031 Sechium edule HOM05D022809 ORTHO05D025100 5.8e-08 61.6 126 37.3
Duzib093G0605 Durio zibethinus HOM05D008046 ORTHO05D004477 7.5e-08 61.2 146 34.9
Eucgr.B00040 Eucalyptus grandis HOM05D008046 ORTHO05D004477 7.5e-08 61.2 153 37.3
Lsat_1_v5_gn_1_3180 Lactuca sativa HOM05D008046 ORTHO05D004477 7.5e-08 61.2 151 33.8
Ah.02g126210 Amaranthus hybridus HOM05D031888 ORTHO05D004477 9.8e-08 60.8 176 33.0
Gohir.A11G204400 Gossypium hirsutum HOM05D008176 ORTHO05D004477 9.8e-08 60.8 136 38.2
CiPaw.16G033000 Carya illinoinensis HOM05D008046 ORTHO05D004477 1.3e-07 60.5 154 32.5
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 1.3e-07 60.5 154 35.7
Gohir.D11G218800 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.2e-07 59.7 135 37.8
PGSC0003DMG400016791 Solanum tuberosum HOM05D008176 ORTHO05D004477 2.2e-07 59.7 140 38.6
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 2.2e-07 59.7 136 37.5
COL.COLO4_12009 Corchorus olitorius HOM05D008046 ORTHO05D004477 2.9e-07 59.3 149 36.9
Potri.002G100500 Populus trichocarpa HOM05D008046 ORTHO05D004477 2.9e-07 59.3 150 32.7
Lj1g0004298 Lotus japonicus HOM05D008046 ORTHO05D004477 3.7e-07 58.9 172 32.0
Duzib041G0197 Durio zibethinus HOM05D008046 ORTHO05D004477 4.9e-07 58.5 146 37.0
Cc10_g06700 Coffea canephora HOM05D008046 ORTHO05D004477 6.4e-07 58.2 145 34.5
PGR031G3049 Punica granatum HOM05D008046 ORTHO05D004477 6.4e-07 58.2 149 36.9
Sabra05G0058900 Salix brachista HOM05D008176 ORTHO05D004477 6.4e-07 58.2 139 34.5
CiPaw.15G046100 Carya illinoinensis HOM05D008046 ORTHO05D004477 8.3e-07 57.8 144 31.9
Glyma.04G099200 Glycine max HOM05D008046 ORTHO05D004477 8.3e-07 57.8 158 35.4
unitig_32.g11784 Utricularia gibba HOM05D008046 ORTHO05D004477 8.3e-07 57.8 138 37.7
CSS0043643 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.1e-06 57.4 143 35.7
Manes.02G149300 Manihot esculenta HOM05D008046 ORTHO05D004477 1.1e-06 57.4 137 32.8
Potri.005G161700 Populus trichocarpa HOM05D008046 ORTHO05D004477 1.1e-06 57.4 146 32.9
Duzib116G0877 Durio zibethinus HOM05D008046 ORTHO05D004477 1.4e-06 57.0 158 36.1
Sabra02G0078700 Salix brachista HOM05D008046 ORTHO05D004477 1.9e-06 56.6 148 32.4
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 4.1e-06 55.5 124 39.5
HPP92_027240 Vanilla planifolia HOM05D042051 ORTHO05D037828 5.4e-06 55.1 137 31.4
Lalb_Chr23g0270371 Lupinus albus HOM05D008046 ORTHO05D004477 9.2e-06 54.3 137 31.4


User provided reference genes

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