Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 6.5e-160 567.4 294 100.0
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 9.6e-71 271.2 223 69.5
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 7.1e-58 228.4 224 62.9
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 9.3e-58 228.0 224 62.9
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 2.1e-57 226.9 224 62.9
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 4.5e-44 182.6 221 56.6
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 3.8e-43 179.5 221 55.7
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 2.5e-42 176.8 229 52.4
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.9e-39 167.2 226 52.2
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 4.3e-39 166.0 227 51.5
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 4.8e-38 162.5 228 54.4
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 1.8e-37 160.6 225 52.9
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 4.1e-37 159.5 230 50.0
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 1.2e-36 157.9 229 48.9
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 1.2e-36 157.9 223 49.3
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 2.6e-36 156.8 229 51.5
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 4.5e-36 156.0 227 49.3
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 1.4e-34 151.0 223 48.4
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.9e-34 150.6 227 48.9
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.5e-34 150.2 222 48.2
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 7.2e-34 148.7 137 62.0
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.2e-33 147.9 224 50.4
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 1.6e-33 147.5 225 49.3
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 6.1e-33 145.6 239 47.3
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 6.1e-33 145.6 223 48.0
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 6.1e-33 145.6 217 47.9
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 7.9e-33 145.2 225 48.9
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 1.0e-32 144.8 191 48.2
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.0e-32 144.8 228 50.0
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 2.3e-32 143.7 131 66.4
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 2.3e-32 143.7 131 66.4
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 2.3e-32 143.7 223 47.5
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 2.3e-32 143.7 223 47.1
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 3.0e-32 143.3 229 49.3
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 3.0e-32 143.3 131 66.4
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 3.0e-32 143.3 131 66.4
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 3.0e-32 143.3 215 48.4
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 6.7e-32 142.1 224 46.4
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 6.7e-32 142.1 226 46.9
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 6.7e-32 142.1 191 47.1
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 8.7e-32 141.7 232 46.1
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 8.7e-32 141.7 232 45.3
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 1.1e-31 141.4 217 49.8
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.5e-31 140.2 131 60.3
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 9.7e-31 138.3 230 44.8
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 2.8e-30 136.7 224 47.3
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 2.8e-30 136.7 221 47.1
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 6.3e-30 135.6 134 62.7
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 1.4e-29 134.4 195 46.7
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 2.4e-29 133.7 179 50.3
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 4.1e-29 132.9 202 46.0
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 9.1e-29 131.7 155 52.9
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.2e-28 131.3 209 45.9
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 1.2e-28 131.3 216 45.8
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 1.2e-28 131.3 201 44.3
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 1.5e-28 131.0 206 44.7
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 1.5e-28 131.0 189 49.7
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 3.4e-28 129.8 222 45.5
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 1.7e-27 127.5 262 42.7
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 1.7e-27 127.5 230 43.0
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 2.2e-27 127.1 157 49.7
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 2.9e-27 126.7 132 59.8
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 3.8e-27 126.3 226 45.1
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 3.8e-27 126.3 228 42.1
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 5.0e-27 125.9 145 53.1
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 5.0e-27 125.9 160 51.9
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 2.5e-26 123.6 132 56.8
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 3.2e-26 123.2 208 47.1
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 3.2e-26 123.2 148 50.0
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 3.2e-26 123.2 148 50.0
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 3.2e-26 123.2 131 55.7
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 4.2e-26 122.9 134 55.2
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 7.2e-26 122.1 230 44.3
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 9.4e-26 121.7 153 52.3
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.2e-25 121.3 166 49.4
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 1.2e-25 121.3 233 44.6
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 1.6e-25 120.9 211 41.2
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 1.6e-25 120.9 209 41.6
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 2.1e-25 120.6 225 44.9
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 2.1e-25 120.6 259 40.5
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 2.7e-25 120.2 224 43.8
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 3.6e-25 119.8 193 45.6
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 3.6e-25 119.8 229 43.7
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 6.1e-25 119.0 141 53.2
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 7.9e-25 118.6 134 53.0
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 7.9e-25 118.6 134 53.0
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 7.9e-25 118.6 204 44.6
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 1.4e-24 117.9 213 44.6
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 6.7e-24 115.5 223 41.7
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 8.8e-24 115.2 223 41.7
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.1e-23 114.8 84 70.2
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 1.5e-23 114.4 228 39.9
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 1.5e-23 114.4 228 39.9
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.5e-23 114.4 228 41.2
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 2.6e-23 113.6 220 41.8
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 2.6e-23 113.6 207 41.1
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 2.6e-23 113.6 207 41.1
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 5.7e-23 112.5 82 69.5
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 5.7e-23 112.5 230 43.0
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 9.7e-23 111.7 230 39.6
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 9.7e-23 111.7 258 38.8
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 1.3e-22 111.3 234 39.3
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 1.3e-22 111.3 229 39.7
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 1.3e-22 111.3 232 39.7
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 1.3e-22 111.3 256 38.7
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 2.8e-22 110.2 232 38.8
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 8.2e-22 108.6 238 40.3
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 1.4e-21 107.8 131 51.1
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 4.1e-21 106.3 222 41.9
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 5.3e-21 105.9 108 59.3
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 6.9e-21 105.5 205 40.0
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 1.5e-20 104.4 233 42.1
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 4.5e-20 102.8 237 40.1
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 1.7e-19 100.9 200 40.5
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 2.5e-18 97.1 162 42.6
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 5.5e-18 95.9 145 46.9
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 9.4e-18 95.1 85 62.4
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 2.1e-17 94.0 79 60.8
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 2.3e-16 90.5 68 69.1
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 6.7e-16 89.0 141 42.6
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 1.1e-15 88.2 81 56.8
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 4.4e-15 86.3 133 44.4
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 9.7e-15 85.1 78 57.7
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 2.2e-14 84.0 128 47.7
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 4.8e-14 82.8 52 80.8
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 8.2e-14 82.0 57 77.2
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 2.6e-12 77.0 52 75.0
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 2.6e-12 77.0 52 75.0
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.1e-10 71.6 48 68.8
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 3.2e-10 70.1 83 53.0
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 2.1e-09 67.4 53 54.7
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 2.1e-09 67.4 95 40.0
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 1.0e-08 65.1 40 80.0
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 3.0e-08 63.5 99 36.4
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 4.4e-07 59.7 59 52.5


User provided reference genes

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