Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.6e-59 232.6 128 100.0
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 8.2e-51 203.8 114 97.4
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.9e-40 168.7 123 75.6
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 5.0e-40 167.9 114 79.8
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 1.4e-39 166.4 114 78.1
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.9e-39 166.0 114 78.9
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 9.4e-39 163.7 123 73.2
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 1.4e-37 159.8 123 70.7
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 1.8e-37 159.5 114 75.4
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 2.3e-37 159.1 123 70.7
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.9e-37 158.3 114 73.7
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 6.7e-37 157.5 114 72.8
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.5e-36 156.4 114 72.8
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.5e-36 156.4 114 72.8
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 3.3e-36 155.2 114 73.7
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 7.4e-36 154.1 123 68.3
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 7.4e-36 154.1 123 69.9
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 1.3e-35 153.3 114 71.1
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.7e-35 152.9 114 72.8
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 1.7e-35 152.9 123 69.9
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 1.7e-35 152.9 114 71.1
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 2.2e-35 152.5 114 71.1
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 2.8e-35 152.1 123 69.1
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 2.8e-35 152.1 123 68.3
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 6.3e-35 151.0 114 71.1
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 6.3e-35 151.0 123 69.1
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 6.3e-35 151.0 115 69.6
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 1.1e-34 150.2 123 66.7
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 1.4e-34 149.8 123 69.1
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.4e-34 149.8 114 69.3
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 2.4e-34 149.1 114 70.2
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 2.4e-34 149.1 114 70.2
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 4.1e-34 148.3 123 68.3
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 4.1e-34 148.3 114 69.3
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 5.3e-34 147.9 123 67.5
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 9.1e-34 147.1 114 69.3
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 9.1e-34 147.1 123 65.0
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 9.1e-34 147.1 123 65.9
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 1.2e-33 146.7 114 70.2
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 5.9e-33 144.4 114 65.8
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 1.3e-32 143.3 114 65.8
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 2.2e-32 142.5 115 68.7
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 5.0e-32 141.4 114 69.3
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 8.5e-32 140.6 113 67.3
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.1e-31 140.2 124 61.3
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.1e-31 140.2 124 61.3
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 1.1e-31 140.2 114 66.7
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 3.2e-31 138.7 115 63.5
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 9.4e-31 137.1 124 60.5
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 9.4e-31 137.1 123 59.3
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 1.6e-30 136.3 114 64.0
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.6e-30 136.3 124 59.7
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 3.6e-30 135.2 123 63.4
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 7.9e-30 134.0 115 64.3
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 1.0e-29 133.7 114 64.0
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 3.0e-29 132.1 114 62.3
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 3.9e-29 131.7 115 63.5
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 5.1e-29 131.3 114 66.7
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 1.1e-28 130.2 115 59.1
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.5e-28 129.8 114 65.8
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 2.0e-28 129.4 114 59.6
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 4.4e-28 128.3 114 58.8
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 5.7e-28 127.9 114 59.6
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 5.7e-28 127.9 115 61.7
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 5.7e-28 127.9 115 58.3
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 5.7e-28 127.9 123 62.6
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 1.3e-27 126.7 112 62.5
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 1.7e-27 126.3 115 60.0
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 3.7e-27 125.2 123 56.9
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 4.8e-27 124.8 115 60.0
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 8.2e-27 124.0 115 60.0
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 3.1e-26 122.1 111 63.1
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 4.1e-26 121.7 114 58.8
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 4.1e-26 121.7 115 60.9
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 5.3e-26 121.3 95 72.6
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 7.0e-26 120.9 95 71.6
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 9.1e-26 120.6 113 60.2
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 1.5e-25 119.8 123 55.3
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.5e-25 119.8 94 71.3
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.5e-25 119.8 94 71.3
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.5e-25 119.8 94 71.3
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 2.0e-25 119.4 118 55.1
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 4.5e-25 118.2 112 56.2
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 5.9e-25 117.9 120 56.7
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 7.7e-25 117.5 122 57.4
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.0e-24 117.1 94 70.2
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 1.7e-24 116.3 115 53.0
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 2.9e-24 115.5 123 53.7
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 2.9e-24 115.5 114 58.8
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 2.9e-24 115.5 114 57.0
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 3.8e-24 115.2 123 53.7
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 6.5e-24 114.4 115 57.4
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 8.5e-24 114.0 123 52.0
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 1.5e-23 113.2 123 51.2
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 1.5e-23 113.2 123 51.2
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 1.5e-23 113.2 123 51.2
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.5e-23 113.2 118 56.8
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 1.5e-23 113.2 94 67.0
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 1.9e-23 112.8 123 51.2
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 2.5e-23 112.5 123 50.4
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 4.2e-23 111.7 123 51.2
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 5.5e-23 111.3 123 50.4
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 5.5e-23 111.3 123 50.4
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 9.4e-23 110.5 114 58.8
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 1.6e-22 109.8 114 57.0
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 4.7e-22 108.2 114 54.4
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 8.0e-22 107.5 114 54.4
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 4.4e-20 101.7 113 55.8
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 4.4e-20 101.7 114 56.1
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 9.7e-20 100.5 79 67.1
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 2.8e-19 99.0 113 54.0
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 3.7e-19 98.6 114 50.9
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 1.8e-18 96.3 107 46.7
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 2.4e-18 95.9 114 49.1
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 2.4e-18 95.9 114 49.1
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.2e-16 89.4 102 54.9
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.5e-15 86.7 102 53.9
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.9e-15 86.3 118 49.2
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 2.5e-15 85.9 114 44.7
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 2.7e-14 82.4 85 52.9
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 1.8e-13 79.7 93 51.6
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 8.8e-13 77.4 58 72.4
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 1.2e-12 77.0 60 70.0
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.8e-11 71.6 65 56.9
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.7e-09 65.9 99 49.5
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 2.7e-09 65.9 99 49.5
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 4.2e-07 58.5 77 44.2
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 9.4e-07 57.4 84 46.4
Gohir.A04G127300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.7e-06 55.8 65 55.4
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 8.0e-06 54.3 45 60.0


User provided reference genes

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