Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 3.1e-211 738.4 428 100.0
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 5.0e-153 545.0 420 79.0
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 1.2e-135 487.3 439 70.8
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 3.5e-130 469.2 436 70.2
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 3.3e-128 462.6 419 71.4
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 3.4e-117 426.0 422 63.7
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 8.3e-116 421.4 431 61.5
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.9e-115 420.2 469 58.0
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 4.1e-115 419.1 463 59.2
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 4.6e-114 415.6 418 60.5
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 6.0e-114 415.2 446 60.8
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 6.0e-114 415.2 457 57.3
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 6.0e-114 415.2 427 64.9
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 2.3e-113 413.3 328 71.3
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 7.3e-112 408.3 414 60.9
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 2.1e-111 406.8 428 61.0
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 3.6e-111 406.0 349 71.1
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 4.0e-110 402.5 425 63.3
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 1.5e-109 400.6 427 61.6
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 1.7e-108 397.1 425 62.8
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 1.7e-108 397.1 390 62.1
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 3.7e-108 396.0 425 63.3
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 6.4e-108 395.2 438 57.1
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 1.9e-107 393.7 431 60.6
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 4.1e-107 392.5 431 61.7
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 7.1e-107 391.7 430 58.4
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 2.1e-106 390.2 444 60.8
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 3.5e-106 389.4 455 58.2
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 7.8e-106 388.3 426 61.3
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 7.8e-106 388.3 308 72.4
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 1.7e-105 387.1 423 60.5
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 3.9e-105 386.0 409 59.9
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.1e-104 384.4 308 71.8
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.5e-104 383.3 434 58.5
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 3.3e-104 382.9 248 79.8
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 7.3e-104 381.7 308 71.1
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 4.7e-103 379.0 263 78.7
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 4.7e-103 379.0 311 70.7
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 4.7e-103 379.0 423 59.1
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 2.4e-102 376.7 249 80.3
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 2.4e-102 376.7 273 73.6
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 4.0e-102 375.9 348 63.2
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 6.8e-102 375.2 479 51.8
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 8.9e-102 374.8 247 79.8
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.6e-101 373.2 431 55.9
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 4.4e-101 372.5 264 74.2
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 5.8e-101 372.1 261 74.7
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 9.9e-101 371.3 259 74.9
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.3e-100 370.9 430 58.4
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 2.9e-100 369.8 453 56.7
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 8.4e-100 368.2 251 76.1
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 5.4e-99 365.5 298 68.1
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 5.4e-99 365.5 452 56.9
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 9.2e-99 364.8 315 67.0
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 1.2e-98 364.4 256 73.4
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 1.6e-98 364.0 274 71.5
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 1.6e-98 364.0 274 71.5
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 2.1e-98 363.6 334 64.1
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 2.7e-98 363.2 251 75.3
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 2.7e-98 363.2 255 74.9
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 3.5e-98 362.8 328 64.0
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 3.0e-97 359.8 413 59.3
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 3.9e-97 359.4 394 59.4
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 5.1e-97 359.0 252 75.0
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 6.6e-97 358.6 252 75.0
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 6.6e-97 358.6 252 75.0
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 8.7e-97 358.2 436 56.2
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 1.9e-96 357.1 383 58.7
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 4.3e-96 355.9 299 67.6
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 4.3e-96 355.9 328 62.8
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 4.3e-96 355.9 426 55.4
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 7.3e-96 355.1 323 63.5
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 9.6e-96 354.8 242 75.6
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.3e-95 354.4 327 63.0
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 2.4e-94 350.1 461 51.4
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 4.0e-94 349.4 410 51.7
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 6.9e-94 348.6 358 58.9
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 9.9e-93 344.7 356 58.1
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 9.9e-93 344.7 461 55.1
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 1.7e-92 344.0 367 59.4
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.7e-92 344.0 248 72.2
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 2.2e-92 343.6 396 56.6
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 3.8e-92 342.8 243 72.4
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 6.4e-92 342.0 414 57.0
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 8.4e-92 341.7 414 56.8
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 2.4e-91 340.1 368 56.5
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 7.1e-91 338.6 276 65.6
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.6e-90 337.4 414 56.8
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 1.6e-90 337.4 334 58.7
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 7.8e-90 335.1 338 58.3
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 7.8e-90 335.1 418 57.7
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 2.3e-89 333.6 454 48.9
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 8.7e-89 331.6 370 55.7
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 2.5e-88 330.1 432 54.6
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 2.1e-87 327.0 340 57.4
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 3.6e-87 326.2 449 49.4
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 3.6e-87 326.2 246 67.9
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 3.1e-86 323.2 452 52.4
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 9.0e-86 321.6 246 67.1
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 1.5e-85 320.9 397 53.4
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 1.5e-85 320.9 349 53.9
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 4.5e-85 319.3 343 56.0
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.7e-84 317.4 348 53.7
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 1.7e-84 317.4 393 51.7
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 2.2e-84 317.0 338 57.1
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 5.4e-83 312.4 453 50.8
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 7.1e-83 312.0 249 65.9
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 2.7e-82 310.1 341 54.3
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 3.5e-82 309.7 335 55.2
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 1.0e-81 308.1 427 48.2
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 6.7e-81 305.4 391 53.5
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 3.7e-79 299.7 343 54.5
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 6.2e-79 298.9 302 59.6
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 1.8e-78 297.4 213 71.8
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 5.8e-77 292.4 346 51.4
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 2.7e-74 283.5 334 51.5
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 6.7e-73 278.9 264 57.2
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 5.7e-64 249.2 293 50.5
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 2.6e-53 213.8 303 44.6
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 3.7e-47 193.4 238 42.4
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 3.1e-46 190.3 274 43.4
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 3.5e-45 186.8 249 44.6
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 4.2e-43 179.9 112 80.4
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 1.5e-40 171.4 231 40.3
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 3.1e-38 163.7 263 37.3
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.1e-38 163.3 343 37.3
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 5.0e-36 156.4 254 37.0
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 1.1e-35 155.2 89 80.9
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 7.2e-35 152.5 238 41.2
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 8.8e-33 145.6 184 49.5
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 6.3e-31 139.4 255 51.0
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 2.4e-30 137.5 226 39.4
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 2.0e-29 134.4 218 34.9
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 4.5e-29 133.3 264 33.3
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 4.0e-25 120.2 241 50.6
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 1.5e-24 118.2 222 30.6
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 3.7e-23 113.6 229 30.6
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 3.7e-23 113.6 175 41.1
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 6.3e-23 112.8 220 35.5
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 6.8e-17 92.8 143 47.6
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 7.0e-14 82.8 235 30.2
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 9.2e-14 82.4 140 42.1
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 4.6e-13 80.1 161 38.5
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 1.7e-12 78.2 105 42.9
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 1.1e-11 75.5 108 42.6
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 1.9e-11 74.7 105 45.7
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 1.2e-10 72.0 177 32.2
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 3.6e-10 70.5 45 57.8
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 1.5e-08 65.1 51 49.0
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 7.5e-08 62.8 130 39.2
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 1.9e-06 58.2 137 34.3


User provided reference genes

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