Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 2.4e-212 741.9 367 100.0
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 1.7e-125 453.4 371 64.7
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 6.7e-122 441.4 386 61.7
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 5.3e-119 431.8 372 61.8
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 2.0e-118 429.9 323 68.7
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 1.1e-113 414.1 370 63.0
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 1.7e-85 320.5 376 47.1
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 1.7e-85 320.5 381 49.9
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 4.2e-84 315.8 371 46.9
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 5.7e-81 305.4 383 46.7
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 2.8e-80 303.1 376 46.3
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 6.3e-80 302.0 387 47.8
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 8.2e-80 301.6 387 47.0
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 8.2e-80 301.6 375 50.4
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 1.1e-79 301.2 377 47.7
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 1.8e-79 300.4 362 49.4
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 1.6e-78 297.4 387 45.7
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 2.7e-78 296.6 375 49.9
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 3.2e-76 289.7 379 46.2
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 1.4e-74 284.3 382 45.0
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 3.0e-74 283.1 371 47.2
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 6.8e-74 282.0 368 46.7
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 4.4e-73 279.3 393 43.5
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 1.1e-68 264.6 372 44.6
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 4.7e-67 259.2 370 42.7
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 1.8e-66 257.3 372 44.6
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.8e-66 257.3 371 44.2
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 2.0e-65 253.8 390 42.8
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 4.4e-65 252.7 375 41.6
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 5.7e-65 252.3 372 43.8
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 9.8e-65 251.5 373 42.4
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 1.3e-64 251.1 369 42.5
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.1e-63 246.5 362 43.9
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 3.5e-62 243.0 401 42.1
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 7.8e-62 241.9 369 40.4
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 7.8e-62 241.9 375 40.0
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 1.3e-61 241.1 305 46.6
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 4.3e-60 236.1 377 40.1
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 7.3e-60 235.3 370 42.2
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.2e-59 234.6 371 39.4
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 3.6e-59 233.0 369 41.7
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 3.6e-59 233.0 369 41.7
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 8.0e-59 231.9 350 43.7
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 6.8e-58 228.8 368 39.7
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 1.7e-56 224.2 369 39.0
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 1.2e-54 218.0 172 62.8
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 1.3e-53 214.5 350 42.3
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 6.6e-53 212.2 359 39.8
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 1.6e-51 207.6 368 36.7
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.1e-51 207.2 343 39.1
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 2.1e-51 207.2 389 36.8
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 7.0e-47 192.2 370 36.8
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 7.8e-46 188.7 351 37.3
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 2.3e-45 187.2 370 35.7
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 1.5e-44 184.5 371 33.4
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.9e-44 184.1 358 36.0
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 9.5e-44 181.8 371 33.4
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 1.2e-43 181.4 371 33.4
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 1.6e-43 181.0 228 45.6
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 2.8e-43 180.3 370 34.1
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 3.4e-41 173.3 283 38.9
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 4.4e-41 172.9 359 35.9
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 4.4e-41 172.9 394 33.2
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 4.4e-41 172.9 394 33.2
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 5.8e-41 172.6 361 35.7
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 7.5e-41 172.2 356 35.7
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 3.7e-40 169.9 349 35.8
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 1.4e-39 167.9 351 36.2
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 4.1e-39 166.4 350 35.4
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 5.4e-39 166.0 371 34.2
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 5.4e-39 166.0 358 34.1
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 5.4e-39 166.0 358 34.1
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 5.4e-39 166.0 358 34.1
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 9.2e-39 165.2 359 35.9
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 9.2e-39 165.2 363 34.4
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 9.2e-39 165.2 161 52.8
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 1.2e-38 164.9 361 34.3
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 1.6e-38 164.5 371 34.0
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 1.6e-38 164.5 371 32.6
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 6.0e-38 162.5 347 33.4
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 1.0e-37 161.8 359 32.6
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 1.3e-37 161.4 193 47.2
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 2.3e-37 160.6 348 32.5
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 2.3e-37 160.6 329 34.7
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 3.9e-37 159.8 349 34.1
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 3.9e-37 159.8 374 32.4
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 1.9e-36 157.5 381 34.1
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 4.3e-36 156.4 364 35.4
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 9.5e-36 155.2 348 33.9
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 1.2e-35 154.8 370 33.8
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 1.2e-35 154.8 367 34.3
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 6.2e-35 152.5 369 33.1
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 8.1e-35 152.1 386 32.4
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 8.1e-35 152.1 365 34.2
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 2.4e-34 150.6 359 33.7
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.3e-32 144.8 348 31.3
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 1.7e-32 144.4 177 43.5
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.7e-32 144.4 353 30.9
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 8.4e-32 142.1 360 33.3
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 1.1e-31 141.7 413 29.5
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 1.4e-31 141.4 255 35.3
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 1.4e-31 141.4 169 45.0
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 1.4e-31 141.4 251 38.6
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 1.4e-31 141.4 251 38.6
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 1.4e-31 141.4 169 45.0
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 1.9e-31 141.0 340 33.5
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 3.2e-31 140.2 173 39.9
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 7.1e-31 139.0 355 34.1
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 9.2e-31 138.7 376 31.6
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 1.2e-30 138.3 358 30.4
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 2.7e-30 137.1 156 42.9
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 6.0e-30 136.0 172 43.0
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 1.3e-29 134.8 208 40.9
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.7e-29 134.4 286 36.0
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 2.5e-28 130.6 362 31.2
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 3.3e-28 130.2 364 31.0
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 3.3e-28 130.2 364 31.0
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 4.3e-28 129.8 358 32.1
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 4.3e-28 129.8 412 29.9
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 3.6e-27 126.7 200 40.5
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 4.7e-27 126.3 347 33.4
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 8.1e-27 125.6 304 32.2
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 1.1e-23 115.2 156 41.7
Lj2C552G1 Lonicera japonica HOM05D005306 ORTHO05D006158 3.5e-22 110.2 214 40.7
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 2.3e-21 107.5 120 45.8
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 8.7e-21 105.5 110 47.3
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 4.3e-20 103.2 358 28.2
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 1.6e-19 101.3 343 29.7
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 6.9e-18 95.9 161 36.0
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 4.5e-17 93.2 148 33.8
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 4.2e-15 86.7 140 39.3
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 9.3e-15 85.5 107 42.1
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 1.1e-12 78.6 183 31.7
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.8e-10 71.2 273 27.8
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 1.8e-10 71.2 82 46.3
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 3.1e-10 70.5 137 32.1
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 3.4e-09 67.0 101 36.6
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 4.5e-09 66.6 96 37.5
CDE10G0861 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 2.1e-06 57.8 93 30.1


User provided reference genes

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