Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 4.1e-128 461.5 239 100.0
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 2.1e-92 342.8 269 70.3
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 5.2e-91 338.2 240 75.4
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 1.7e-78 296.6 242 67.4
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 4.3e-77 292.0 242 66.9
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 8.9e-75 284.3 242 64.5
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 2.2e-73 279.6 243 66.3
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 1.1e-72 277.3 243 66.3
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 1.8e-72 276.6 243 63.8
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 4.1e-72 275.4 223 66.8
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 5.4e-72 275.0 242 62.8
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 2.0e-71 273.1 242 62.4
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 4.6e-71 271.9 235 62.6
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 6.0e-71 271.6 239 64.4
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 1.3e-70 270.4 242 61.2
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 6.6e-70 268.1 242 62.4
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 6.6e-70 268.1 242 60.7
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 8.6e-70 267.7 242 62.4
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 8.6e-70 267.7 242 61.6
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 3.3e-69 265.8 243 60.5
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 9.5e-69 264.2 243 63.8
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 9.5e-69 264.2 242 61.2
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 9.5e-69 264.2 242 62.0
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 1.2e-68 263.8 242 60.7
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 6.2e-68 261.5 243 62.1
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 8.0e-68 261.2 240 62.1
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.4e-67 260.4 241 60.6
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 2.0e-66 256.5 247 58.3
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 3.4e-66 255.8 241 60.2
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 5.8e-66 255.0 236 59.3
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 5.8e-66 255.0 242 58.7
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 2.9e-65 252.7 293 51.9
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 1.1e-64 250.8 242 57.9
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 1.4e-64 250.4 248 58.1
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 1.4e-64 250.4 220 64.1
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 4.1e-64 248.8 242 58.3
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 9.2e-64 247.7 217 64.5
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 1.2e-63 247.3 210 64.8
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 2.0e-63 246.5 247 57.9
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 2.0e-63 246.5 242 57.4
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 2.0e-63 246.5 220 63.6
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 2.7e-63 246.1 242 57.9
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 4.6e-63 245.4 242 56.6
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 6.0e-63 245.0 244 61.5
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 1.0e-62 244.2 261 54.8
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 1.3e-62 243.8 242 56.6
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 2.3e-62 243.0 239 57.3
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 6.6e-62 241.5 242 57.0
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.9e-61 240.0 215 58.1
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.5e-61 239.6 237 56.5
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.5e-61 239.6 237 56.5
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 5.6e-61 238.4 240 58.3
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.6e-60 236.9 204 60.8
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 1.6e-60 236.9 242 56.2
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 4.7e-60 235.3 242 55.4
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 6.2e-60 235.0 240 53.8
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 8.1e-60 234.6 244 58.6
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 5.2e-59 231.9 219 58.0
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 5.2e-59 231.9 243 57.2
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 6.8e-59 231.5 237 55.3
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 8.9e-59 231.1 213 58.2
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 8.9e-59 231.1 213 58.2
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 2.0e-58 229.9 232 54.3
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 5.8e-58 228.4 241 54.8
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 7.5e-58 228.0 236 55.1
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 1.7e-57 226.9 219 57.1
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 1.7e-57 226.9 226 56.6
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.2e-57 226.5 218 57.3
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 2.9e-57 226.1 217 57.1
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 3.2e-56 222.6 249 53.0
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 9.2e-56 221.1 243 54.7
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 9.2e-56 221.1 182 63.2
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 9.2e-56 221.1 242 55.8
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 1.2e-55 220.7 245 54.3
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 1.6e-55 220.3 239 56.9
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 6.0e-55 218.4 211 55.5
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 7.8e-55 218.0 222 57.2
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 5.1e-54 215.3 200 60.0
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 5.1e-54 215.3 258 48.8
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 6.6e-54 214.9 240 51.7
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 5.6e-53 211.8 245 52.7
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 1.6e-52 210.3 196 58.7
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.7e-52 208.8 219 53.4
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 4.7e-52 208.8 244 53.3
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 1.1e-51 207.6 235 54.9
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 4.0e-51 205.7 205 57.6
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 5.2e-51 205.3 219 52.5
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 5.2e-51 205.3 239 51.0
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 2.6e-50 203.0 234 50.9
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 7.6e-50 201.4 237 50.2
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 4.9e-49 198.7 225 53.3
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 4.9e-49 198.7 173 63.6
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 8.4e-49 198.0 220 52.7
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 1.4e-48 197.2 236 50.0
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 1.9e-48 196.8 279 49.8
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 3.2e-48 196.1 201 55.2
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 5.4e-48 195.3 238 50.4
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 1.2e-47 194.1 248 48.8
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 1.0e-46 191.0 242 48.8
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.3e-46 190.7 242 50.0
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 1.7e-46 190.3 240 48.3
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 3.0e-46 189.5 233 49.4
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 3.0e-46 189.5 171 61.4
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 3.0e-46 189.5 245 49.4
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.1e-45 187.6 238 48.3
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 1.1e-45 187.6 238 52.9
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 1.5e-45 187.2 238 48.3
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 1.5e-45 187.2 240 48.8
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 1.9e-45 186.8 249 47.4
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 2.5e-45 186.4 256 49.6
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 2.1e-44 183.3 235 49.4
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 6.2e-44 181.8 235 48.5
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 1.2e-42 177.6 237 47.3
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 4.9e-41 172.2 238 45.4
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 6.4e-41 171.8 242 47.5
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 6.4e-41 171.8 238 45.0
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 8.4e-41 171.4 192 52.1
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 3.2e-40 169.5 238 49.2
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.2e-40 169.1 174 54.0
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 1.0e-38 164.5 168 54.2
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 1.3e-38 164.1 121 70.2
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 4.8e-36 155.6 251 41.8
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 6.2e-36 155.2 202 46.5
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.1e-35 154.5 236 44.1
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 4.0e-35 152.5 184 53.8
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 9.0e-35 151.4 244 45.5
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 9.0e-35 151.4 234 44.0
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 9.9e-34 147.9 236 41.1
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 1.3e-33 147.5 165 49.1
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 6.4e-33 145.2 240 41.7
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 2.4e-32 143.3 109 68.8
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 6.0e-31 138.7 170 50.0
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-30 137.5 190 45.8
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.9e-29 133.7 99 75.8
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 7.4e-29 131.7 208 41.3
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 6.9e-27 125.2 167 44.9
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 4.5e-26 122.5 204 40.2
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 6.4e-25 118.6 152 47.4
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 7.9e-23 111.7 196 39.3
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 5.1e-22 109.0 160 43.1
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 2.8e-20 103.2 160 41.2
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.9e-17 93.2 104 49.0
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.4e-16 90.9 104 48.1
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 9.3e-16 88.2 214 35.0
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.7e-14 82.0 92 46.7
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 1.5e-13 80.9 81 51.9
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.5e-13 80.1 133 39.1
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 4.3e-13 79.3 156 35.3
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 7.4e-13 78.6 92 45.7
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-12 77.8 81 50.6
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 4.8e-12 75.9 89 47.2
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 1.4e-11 74.3 107 42.1
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.8e-11 73.9 50 82.0
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 5.3e-11 72.4 39 94.9
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 1.5e-10 70.9 56 64.3
arahy.Tifrunner.gnm1.ann1.E9WDF1 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.4e-08 64.3 95 44.2
arahy.Tifrunner.gnm1.ann1.X4R883 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.7e-06 55.5 51 51.0


User provided reference genes

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