Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 2.1e-127 459.1 245 100.0
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 2.6e-114 415.6 243 92.2
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 5.8e-114 414.5 243 90.1
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 5.8e-114 414.5 242 90.9
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 1.4e-112 409.8 243 90.5
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 1.6e-111 406.4 243 88.5
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 5.6e-109 397.9 243 86.8
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 1.4e-107 393.3 243 86.4
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 1.5e-106 389.8 243 85.2
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 1.5e-106 389.8 244 86.1
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.5e-106 389.8 243 85.6
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 4.5e-106 388.3 243 85.2
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 7.6e-106 387.5 243 84.4
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 7.6e-106 387.5 243 84.0
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 1.0e-105 387.1 243 85.2
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 1.7e-105 386.3 243 85.2
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 2.2e-105 386.0 243 84.8
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 2.9e-105 385.6 243 84.8
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 4.9e-105 384.8 243 85.2
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 8.4e-105 384.0 243 84.4
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 2.5e-104 382.5 243 83.1
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.5e-104 382.5 243 83.1
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.2e-103 380.2 246 84.6
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 1.2e-103 380.2 243 83.1
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 2.7e-103 379.0 243 83.1
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 4.6e-103 378.3 243 84.0
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 7.9e-103 377.5 243 82.3
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 1.8e-102 376.3 243 83.5
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 2.3e-102 375.9 244 83.2
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 3.9e-102 375.2 243 83.1
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 6.7e-102 374.4 243 82.7
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 1.1e-101 373.6 243 82.7
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 9.6e-101 370.5 243 82.3
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 4.8e-100 368.2 226 85.8
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 6.3e-100 367.9 243 81.5
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 1.1e-99 367.1 243 81.5
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 1.1e-99 367.1 243 80.7
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.4e-99 365.9 243 81.1
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 3.1e-99 365.5 284 72.2
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 6.9e-99 364.4 244 80.7
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 1.2e-98 363.6 244 80.3
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.5e-98 363.2 244 79.5
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.6e-98 362.5 244 80.3
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 5.9e-98 361.3 243 80.7
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 5.9e-98 361.3 243 78.6
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 7.6e-98 360.9 244 80.3
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 1.7e-97 359.8 244 78.7
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 1.7e-97 359.8 244 79.5
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 5.0e-97 358.2 222 85.1
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 1.4e-96 356.7 245 78.8
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 3.2e-96 355.5 239 79.1
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 4.2e-96 355.1 244 77.0
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 4.2e-96 355.1 244 78.3
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.1e-95 352.8 243 79.8
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 2.7e-95 352.4 245 77.1
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 7.9e-95 350.9 245 77.1
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 7.9e-95 350.9 270 71.5
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 1.3e-94 350.1 244 76.6
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 3.0e-94 349.0 240 78.8
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 5.1e-94 348.2 243 76.1
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 5.1e-94 348.2 243 75.3
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 8.7e-94 347.4 245 77.6
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 1.1e-93 347.1 240 78.8
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 1.9e-93 346.3 244 76.2
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 2.5e-93 345.9 243 74.1
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 2.5e-93 345.9 239 77.8
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 2.5e-93 345.9 243 76.5
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 2.5e-93 345.9 243 74.5
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 3.3e-93 345.5 243 74.1
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 4.3e-93 345.1 243 73.7
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 1.6e-92 343.2 243 74.1
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 1.6e-92 343.2 243 74.1
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 1.6e-92 343.2 246 75.6
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 2.2e-92 342.8 244 76.6
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 4.8e-92 341.7 243 75.3
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 6.3e-92 341.3 245 75.9
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 8.2e-92 340.9 243 74.1
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 8.2e-92 340.9 243 73.7
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 8.2e-92 340.9 243 73.3
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 1.4e-91 340.1 243 73.7
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.4e-91 340.1 196 92.3
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 1.8e-91 339.7 243 74.1
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 2.4e-91 339.3 224 82.1
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.4e-91 339.3 243 73.7
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 6.9e-91 337.8 247 75.7
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 9.1e-91 337.4 243 73.3
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 9.1e-91 337.4 223 80.3
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 1.2e-90 337.0 196 89.8
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 1.5e-90 336.7 246 72.0
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 1.5e-90 336.7 243 71.6
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 2.0e-90 336.3 244 73.4
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 2.6e-90 335.9 226 79.6
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 4.5e-90 335.1 196 90.3
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 1.7e-89 333.2 244 73.0
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 1.7e-89 333.2 244 73.0
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.9e-89 332.4 245 73.9
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 5.0e-89 331.6 245 72.7
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 5.0e-89 331.6 245 75.1
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.1e-88 330.5 196 88.8
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 1.9e-88 329.7 245 72.7
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 1.9e-88 329.7 226 76.1
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 3.2e-88 328.9 244 72.1
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 1.2e-87 327.0 282 66.7
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 2.1e-87 326.2 196 87.2
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 2.1e-87 326.2 244 71.3
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 2.7e-87 325.9 225 76.0
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 2.7e-87 325.9 244 70.9
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 3.6e-87 325.5 292 64.0
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 4.6e-87 325.1 245 72.7
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 6.1e-87 324.7 259 69.9
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 1.0e-86 323.9 279 65.2
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 1.4e-86 323.6 246 70.7
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 1.1e-85 320.5 248 72.6
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.6e-85 319.3 199 85.9
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 3.3e-85 318.9 228 74.1
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 3.3e-85 318.9 199 85.4
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 3.3e-85 318.9 259 69.1
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 5.7e-85 318.2 199 84.9
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 1.3e-84 317.0 196 85.7
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 1.7e-84 316.6 196 84.7
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 2.2e-84 316.2 198 82.3
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.8e-84 315.8 199 84.9
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 3.4e-82 308.9 275 65.5
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 3.2e-80 302.4 231 71.4
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 3.2e-80 302.4 246 65.9
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 1.6e-79 300.1 246 65.0
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 1.5e-77 293.5 196 76.5
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 5.7e-77 291.6 181 84.0
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 8.5e-73 277.7 175 82.9
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 4.7e-71 271.9 224 67.9
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 1.4e-70 270.4 244 62.7
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 5.0e-65 251.9 188 70.2
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.6e-63 246.9 196 71.9
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 4.8e-60 235.3 134 89.6
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 2.0e-58 229.9 225 57.8
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 4.2e-56 222.2 155 76.1
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 1.1e-48 197.6 155 65.8
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 2.2e-44 183.3 149 69.8
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 2.9e-44 183.0 132 72.7
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 7.8e-42 174.9 167 58.7
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 1.9e-40 170.2 112 79.5
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.2e-36 156.8 215 51.2
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 3.0e-33 146.4 198 42.9
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 1.1e-30 137.9 225 42.2
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 1.2e-29 134.4 203 37.9
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 1.4e-27 127.5 100 66.0
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.4e-27 126.7 236 40.7
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 7.1e-27 125.2 209 36.4
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 1.8e-22 110.5 77 71.4
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 1.5e-21 107.5 194 35.1
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 4.4e-21 105.9 192 33.9
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 6.4e-20 102.1 177 44.6
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 3.0e-17 93.2 63 79.4
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 3.1e-14 83.2 64 65.6
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 2.9e-12 76.6 64 68.8
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 4.8e-07 59.3 41 78.0
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 6.2e-07 58.9 40 80.0
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 5.3e-06 55.8 92 43.5


User provided reference genes

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