Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G090000 Carya illinoinensis HOM05D006367 ORTHO05D007942 0.0e+00 1115.1 539 100.0
Haze_25063 Corylus avellana HOM05D006367 ORTHO05D007942 2.7e-257 891.7 540 80.9
Cfa002770 Carpinus fangiana HOM05D006367 ORTHO05D007942 6.1e-257 890.6 540 80.9
QL06p031689 Quercus lobata HOM05D006367 ORTHO05D007942 1.6e-244 849.4 536 76.5
Thecc.01G115500 Theobroma cacao HOM05D006367 ORTHO05D007942 3.7e-238 828.2 537 74.9
COL.COLO4_10985 Corchorus olitorius HOM05D006367 ORTHO05D007942 1.4e-237 826.2 534 75.1
Gohir.A02G136100 Gossypium hirsutum HOM05D006367 ORTHO05D007942 2.9e-235 818.5 534 73.0
Gorai.003G048000 Gossypium raimondii HOM05D006367 ORTHO05D007942 8.6e-235 817.0 534 73.2
Duzib187G0980 Durio zibethinus HOM05D006367 ORTHO05D007942 1.1e-234 816.6 534 73.6
Potri.005G085800 Populus trichocarpa HOM05D006367 ORTHO05D007942 6.8e-232 807.4 475 79.6
Ciclev10025312m.g Citrus clementina HOM05D006367 ORTHO05D007942 1.3e-230 803.1 538 73.4
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 2.9e-230 802.0 540 73.5
TAR625G1249 Trochodendron aralioides HOM05D006367 ORTHO05D007942 6.4e-230 800.8 528 73.5
Sabra05G0070700 Salix brachista HOM05D006367 ORTHO05D007942 1.5e-226 789.6 520 73.8
TWI75G1400 Tripterygium wilfordii HOM05D006367 ORTHO05D007942 1.9e-226 789.3 482 77.0
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 4.3e-226 788.1 533 72.6
Eucgr.I00312 Eucalyptus grandis HOM05D006367 ORTHO05D007942 9.5e-226 786.9 530 72.5
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 1.2e-225 786.6 537 72.3
Atru.chr7.1822 Acer truncatum HOM05D006367 ORTHO05D007942 3.6e-225 785.0 496 76.6
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 4.7e-225 784.6 533 72.6
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 1.1e-224 783.5 533 72.4
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.2e-223 780.0 487 76.8
Manes.12G144300 Manihot esculenta HOM05D006367 ORTHO05D007942 4.4e-223 778.1 522 72.0
FAN26G2292 Fragaria x ananassa HOM05D006367 ORTHO05D007942 8.3e-222 773.9 533 71.5
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 3.9e-219 765.0 534 71.5
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 1.9e-218 762.7 542 69.2
arahy.Tifrunner.gnm1.ann1.511U58 Arachis hypogaea HOM05D006367 ORTHO05D007942 6.8e-216 754.2 478 73.6
arahy.Tifrunner.gnm1.ann1.GSD986 Arachis hypogaea HOM05D006367 ORTHO05D007942 2.6e-215 752.3 478 73.4
PSO675G5206 Papaver somniferum HOM05D006367 ORTHO05D007942 2.6e-215 752.3 478 74.1
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 7.5e-215 750.7 462 76.2
Aqoxy6G00434 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 1.9e-213 746.1 482 73.4
MSTRG.23307 Avicennia marina HOM05D006367 ORTHO05D007942 2.4e-213 745.7 477 74.6
MELO3C034581.2 Cucumis melo HOM05D006367 ORTHO05D007942 3.2e-213 745.3 504 71.8
Thhalv10000126m.g Eutrema salsugineum HOM05D006367 ORTHO05D007942 2.1e-212 742.7 488 71.9
VMungo0251G2542 Vigna mungo HOM05D006367 ORTHO05D007942 6.0e-212 741.1 466 74.5
Solyc04g051610.3 Solanum lycopersicum HOM05D006367 ORTHO05D007942 3.0e-211 738.8 465 74.4
Sc14g0009250 Simmondsia chinensis HOM05D006367 ORTHO05D007942 6.6e-211 737.6 516 68.8
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 8.6e-211 737.3 535 67.5
Sp4g00950 Schrenkiella parvula HOM05D006367 ORTHO05D007942 1.9e-210 736.1 488 71.7
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 3.3e-210 735.3 456 75.0
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 4.3e-210 734.9 480 71.9
Cc07_g16470 Coffea canephora HOM05D006367 ORTHO05D007942 4.3e-210 734.9 472 73.3
Sopen04g022980 Solanum pennellii HOM05D006367 ORTHO05D007942 5.6e-210 734.6 465 74.0
Oeu028362.1 Olea europaea HOM05D006367 ORTHO05D007942 9.5e-210 733.8 490 71.2
Dinv42673 Davidia involucrata HOM05D006367 ORTHO05D007942 1.6e-209 733.0 441 78.0
CsaV3_2G017740 Cucumis sativus L. HOM05D006367 ORTHO05D007942 2.8e-209 732.3 504 70.6
MBI04_g33338_MAGBIO Magnolia biondii HOM05D006367 ORTHO05D007942 3.6e-209 731.9 471 73.2
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 4.7e-209 731.5 533 67.4
ClCG02G000950 Citrullus lanatus HOM05D006367 ORTHO05D007942 4.7e-209 731.5 493 72.0
MELO3C020965.2 Cucumis melo HOM05D006367 ORTHO05D007942 1.1e-208 730.3 505 71.7
PGR004G1961 Punica granatum HOM05D006367 ORTHO05D007942 1.1e-208 730.3 479 73.7
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.4e-208 729.2 488 71.3
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 3.1e-208 728.8 452 74.8
BcaC02g08760 Brassica carinata HOM05D006367 ORTHO05D007942 8.9e-208 727.2 484 71.5
C04p50960 Brassica napus HOM05D006367 ORTHO05D007942 8.9e-208 727.2 484 71.5
BraA04t17280Z Brassica rapa HOM05D006367 ORTHO05D007942 1.2e-207 726.9 486 70.8
BcaB06g27790 Brassica carinata HOM05D006367 ORTHO05D007942 3.4e-207 725.3 490 70.2
A04p16450 Brassica napus HOM05D006367 ORTHO05D007942 7.6e-207 724.2 486 70.6
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 1.1e-205 720.3 503 68.4
Nitab4.5_0009050g0050 Nicotiana tabacum HOM05D006367 ORTHO05D007942 9.2e-205 717.2 523 66.2
Nitab4.5_0000184g0160 Nicotiana tabacum HOM05D006367 ORTHO05D007942 2.1e-204 716.1 492 69.3
Glyma.05G184900 Glycine max HOM05D006367 ORTHO05D007942 6.0e-204 714.5 468 72.6
Psat7g050440 Pisum sativum HOM05D006367 ORTHO05D007942 8.7e-203 710.7 469 70.6
Lj4g0025161 Lotus japonicus HOM05D006367 ORTHO05D007942 1.5e-202 709.9 476 70.2
SalBow6G4439 Salvia bowleyana HOM05D006367 ORTHO05D007942 1.2e-201 706.8 466 70.8
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 4.7e-201 704.9 419 79.7
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 1.1e-200 703.7 437 74.8
Lalb_Chr07g0184731 Lupinus albus HOM05D006367 ORTHO05D007942 1.1e-200 703.7 516 66.1
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 3.1e-200 702.2 419 79.5
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 5.2e-200 701.4 491 68.6
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 5.2e-200 701.4 457 74.4
SGA_v2.0_scaffold2G01287 Striga asiatica HOM05D006367 ORTHO05D007942 9.0e-200 700.7 470 70.6
Aa31LG7G14760 Aethionema arabicum HOM05D006367 ORTHO05D007942 2.6e-199 699.1 539 65.9
CSS0012231 Camellia sinensis var. sinensis HOM05D006367 ORTHO05D007942 4.4e-199 698.4 425 75.8
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 5.8e-199 698.0 431 75.6
TPR.G2178 Trifolium pratense HOM05D006367 ORTHO05D007942 3.8e-198 695.3 467 69.2
Medtr8g092050 Medicago truncatula HOM05D006367 ORTHO05D007942 6.4e-198 694.5 497 67.2
Ca_17687_v3 Cicer arietinum L. HOM05D006367 ORTHO05D007942 1.6e-196 689.9 467 69.4
ECA240G4594 Erigeron canadensis HOM05D006367 ORTHO05D007942 2.3e-195 686.0 458 69.7
CARHR112850 Cardamine hirsuta HOM05D006367 ORTHO05D007942 3.0e-195 685.6 482 67.2
HanXRQChr03g0078741 Helianthus annuus HOM05D006367 ORTHO05D007942 2.1e-193 679.5 505 65.5
Sed0027379 Sechium edule HOM05D006367 ORTHO05D007942 2.6e-191 672.5 419 75.9
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 4.5e-191 671.8 435 73.3
Lsat_1_v5_gn_5_44981 Lactuca sativa HOM05D006367 ORTHO05D007942 5.8e-191 671.4 464 68.5
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 2.2e-190 669.5 457 68.7
DCAR_011462 Daucus carota HOM05D006367 ORTHO05D007942 2.3e-187 659.4 534 61.6
CAN.G1044.2 Capsicum annuum HOM05D006367 ORTHO05D007942 5.1e-187 658.3 479 66.8
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 4.3e-186 655.2 453 68.2
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.2e-183 647.1 436 68.3
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 4.5e-183 645.2 481 62.0
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 1.0e-179 634.0 491 60.9
Actinidia05379 Actinidia chinensis HOM05D006367 ORTHO05D007942 7.4e-178 627.9 425 69.4
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 1.3e-174 617.1 421 70.3
Gohir.D03G046900 Gossypium hirsutum HOM05D006367 ORTHO05D007942 2.1e-172 609.8 352 81.2
Cc04_g11230 Coffea canephora HOM05D006367 ORTHO05D007942 1.3e-171 607.1 392 74.0
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 1.3e-145 520.8 462 53.5
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 9.4e-141 504.6 480 52.7
SMO367G0721 Selaginella moellendorffii HOM05D006367 ORTHO05D007942 1.6e-140 503.8 462 52.4
Phvul.002G265800 Phaseolus vulgaris HOM05D006367 ORTHO05D007942 1.0e-139 501.1 344 69.8
Nitab4.5_0005102g0010 Nicotiana tabacum HOM05D006367 ORTHO05D007942 7.5e-138 495.0 535 50.7
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 4.0e-131 472.6 521 45.9
PGSC0003DMG400020963 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.8e-128 463.8 425 56.0
PGSC0003DMG400023291 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.8e-115 420.6 289 69.6
Peaxi162Scf00106g01216 Petunia axillaris HOM05D006367 ORTHO05D007942 3.2e-112 409.8 414 52.7
Eucgr.L02754 Eucalyptus grandis HOM05D006367 ORTHO05D007942 8.9e-107 391.7 316 61.7
Cre09.g388060 Chlamydomonas reinhardtii HOM05D006367 ORTHO05D007942 1.6e-103 380.9 479 43.0
AagrBONN_evm.TU.Sc2ySwM_344.1355 Anthoceros agrestis HOM05D006367 ORTHO05D007942 2.4e-96 357.1 484 40.9
PGSC0003DMG400031203 Solanum tuberosum HOM05D006367 ORTHO05D007942 6.6e-94 349.0 204 76.5
MCO11G553 Micromonas commoda HOM05D006367 ORTHO05D007942 9.9e-90 335.1 460 40.0
unitig_899.g14612 Utricularia gibba HOM05D006367 ORTHO05D007942 3.5e-87 326.6 235 68.5
Glyma.08G142950 Glycine max HOM05D006367 ORTHO05D007942 3.3e-85 320.1 191 74.9
Hma1.2p1_0696F.1_g204650 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 3.6e-76 290.0 221 66.5
Glyma.08G142900 Glycine max HOM05D006367 ORTHO05D007942 5.4e-72 276.2 233 62.7
PRCOL_00006729 Prasinoderma coloniale HOM05D006367 ORTHO05D007942 1.2e-71 275.0 448 36.8
Aqoxy4G01385 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 1.2e-66 258.5 151 77.5
HPP92_027992 Vanilla planifolia HOM05D006367 ORTHO05D007942 4.5e-66 256.5 213 58.7
Aqoxy4G01201 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 2.2e-65 254.2 151 76.2
GSVIVG01022252001 Vitis vinifera HOM05D006367 ORTHO05D007942 5.9e-42 176.4 180 55.6
PGSC0003DMG400004546 Solanum tuberosum HOM05D006367 ORTHO05D007942 9.4e-40 169.1 425 29.2
Haze_08452 Corylus avellana HOM05D014029 ORTHO05D044818 5.9e-26 123.2 73 75.3
vmacro12891 Vaccinium macrocarpon HOM05D006367 ORTHO05D007942 7.2e-24 116.3 120 57.5
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 1.5e-16 92.0 83 56.6
CARHR293120 Cardamine hirsuta HOM05D006367 ORTHO05D007942 5.5e-16 90.1 89 52.8
Haze_24492 Corylus avellana HOM05D001078 ORTHO05D000927 2.6e-13 81.3 53 77.4
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 1.3e-12 79.0 269 24.2
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 6.3e-12 76.6 269 24.2
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 1.8e-11 75.1 267 24.0
CARHR034070 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.4e-11 74.7 146 36.3
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 4.1e-11 73.9 267 23.2
Hma1.2p1_0696F.1_g204670 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 5.4e-11 73.6 47 59.6
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 1.2e-10 72.4 270 23.0
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.2e-10 72.4 267 23.2
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 2.7e-10 71.2 261 23.8
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 3.5e-10 70.9 235 24.3
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 4.5e-10 70.5 261 23.4
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 4.5e-10 70.5 279 24.0
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 5.9e-10 70.1 309 22.3
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 1.0e-09 69.3 237 23.2
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 1.3e-09 68.9 272 22.4
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 1.3e-09 68.9 235 23.4
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 3.8e-09 67.4 299 24.4
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 3.8e-09 67.4 268 23.1
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 6.6e-09 66.6 235 21.3
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 1.1e-08 65.9 285 23.5
RcHm_v2.0_Chr2g0117431 Rosa chinensis HOM05D006367 ORTHO05D007942 1.1e-08 65.9 105 41.9
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 1.5e-08 65.5 235 22.6
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.5e-08 65.5 272 21.7
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 2.1e-07 61.6 131 26.7
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 6.1e-07 60.1 274 23.0


User provided reference genes

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