Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G088900 Carya illinoinensis HOM05D008370 ORTHO05D009732 4.9e-35 150.6 77 100.0
CiPaw.03G131600 Carya illinoinensis HOM05D008370 ORTHO05D009732 8.7e-16 86.7 78 69.2
Cfa002786 Carpinus fangiana HOM05D008370 ORTHO05D009732 2.5e-15 85.1 77 64.9
Haze_25084 Corylus avellana HOM05D008370 ORTHO05D009732 2.5e-15 85.1 77 64.9
QL06p031379 Quercus lobata HOM05D008370 ORTHO05D009732 2.8e-14 81.6 76 64.5
Dinv05773 Davidia involucrata HOM05D008370 ORTHO05D009732 9.1e-13 76.6 78 59.0
Manes.13G080360 Manihot esculenta HOM05D008370 ORTHO05D009732 1.3e-11 72.8 77 53.2
Glyma.05G186300 Glycine max HOM05D008370 ORTHO05D009732 2.2e-11 72.0 77 53.2
Glyma.08G144800 Glycine max HOM05D008370 ORTHO05D009732 3.8e-11 71.2 77 51.9
Cfa002787 Carpinus fangiana HOM05D008370 ORTHO05D009732 1.1e-10 69.7 75 54.7
Lj4g0015780 Lotus japonicus HOM05D008370 ORTHO05D009732 1.4e-10 69.3 78 52.6
CiPaw.04G088800 Carya illinoinensis HOM05D008370 ORTHO05D009732 1.9e-10 68.9 75 54.7
COL.COLO4_17423 Corchorus olitorius HOM05D008370 ORTHO05D009732 1.9e-10 68.9 74 51.4
Sabra07G0065300 Salix brachista HOM05D008370 ORTHO05D009732 1.9e-10 68.9 71 57.7
Actinidia01380 Actinidia chinensis HOM05D008370 ORTHO05D009732 2.5e-10 68.6 75 54.7
Manes.12G145500 Manihot esculenta HOM05D008370 ORTHO05D009732 4.2e-10 67.8 76 50.0
Prupe.6G166000 Prunus persica HOM05D015647 ORTHO05D009732 4.2e-10 67.8 79 51.9
Rhsim08G0004800 Rhododendron simsii HOM05D008370 ORTHO05D009732 4.2e-10 67.8 76 53.9
Actinidia12221 Actinidia chinensis HOM05D008370 ORTHO05D009732 5.5e-10 67.4 76 57.9
Ciclev10026869m.g Citrus clementina HOM05D008370 ORTHO05D009732 5.5e-10 67.4 76 52.6
Thecc.01G117100 Theobroma cacao HOM05D008370 ORTHO05D009732 7.2e-10 67.0 75 53.3
TPR.G2215 Trifolium pratense HOM05D010746 ORTHO05D009732 7.2e-10 67.0 75 53.3
arahy.Tifrunner.gnm1.ann1.Q4N452 Arachis hypogaea HOM05D010746 ORTHO05D009732 2.1e-09 65.5 76 51.3
arahy.Tifrunner.gnm1.ann1.R1SWRL Arachis hypogaea HOM05D010746 ORTHO05D009732 2.1e-09 65.5 76 51.3
Lj1g0003311 Lotus japonicus HOM05D008370 ORTHO05D009732 2.1e-09 65.5 81 49.4
COL.COLO4_22370 Corchorus olitorius HOM05D008370 ORTHO05D009732 2.7e-09 65.1 76 51.3
Potri.007G077300 Populus trichocarpa HOM05D008370 ORTHO05D009732 3.6e-09 64.7 72 55.6
Lalb_Chr12g0203401 Lupinus albus HOM05D010746 ORTHO05D009732 4.6e-09 64.3 75 52.0
Glyma.05G186400 Glycine max HOM05D010746 ORTHO05D009732 7.9e-09 63.5 80 50.0
Lalb_Chr07g0184691 Lupinus albus HOM05D010746 ORTHO05D009732 1.0e-08 63.2 73 54.8
Lj4g0014601 Lotus japonicus HOM05D010746 ORTHO05D009732 1.4e-08 62.8 85 49.4
Potri.005G087000 Populus trichocarpa HOM05D008370 ORTHO05D009732 1.4e-08 62.8 72 55.6
arahy.Tifrunner.gnm1.ann1.G5B6SC Arachis hypogaea HOM05D008370 ORTHO05D009732 1.8e-08 62.4 77 46.8
Thecc.07G145600 Theobroma cacao HOM05D008370 ORTHO05D009732 1.8e-08 62.4 73 49.3
Gohir.A01G042000 Gossypium hirsutum HOM05D008370 ORTHO05D009732 2.3e-08 62.0 76 50.0
Gohir.D03G047500 Gossypium hirsutum HOM05D008370 ORTHO05D009732 2.3e-08 62.0 75 50.7
arahy.Tifrunner.gnm1.ann1.U48W6H Arachis hypogaea HOM05D008370 ORTHO05D009732 3.0e-08 61.6 75 50.7
Phvul.002G267404 Phaseolus vulgaris HOM05D008370 ORTHO05D009732 3.9e-08 61.2 74 47.3
Sabra05G0071700 Salix brachista HOM05D008370 ORTHO05D009732 3.9e-08 61.2 71 53.5
CSS0039971 Camellia sinensis var. sinensis HOM05D008370 ORTHO05D009732 5.1e-08 60.8 75 56.0
Gorai.002G039200 Gossypium raimondii HOM05D008370 ORTHO05D009732 5.1e-08 60.8 76 48.7
Gorai.003G048600 Gossypium raimondii HOM05D008370 ORTHO05D009732 6.7e-08 60.5 75 50.7
TPR.G2226 Trifolium pratense HOM05D008370 ORTHO05D009732 8.8e-08 60.1 76 50.0
Lalb_Chr12g0203411 Lupinus albus HOM05D008370 ORTHO05D009732 1.1e-07 59.7 74 45.9
TAR376G0884 Trochodendron aralioides HOM05D008370 ORTHO05D009732 1.5e-07 59.3 80 46.2
Duzib147G0345 Durio zibethinus HOM05D008370 ORTHO05D009732 3.3e-07 58.2 74 48.6
Medtr8g092340 Medicago truncatula HOM05D010746 ORTHO05D009732 3.3e-07 58.2 78 46.2
Psat7g050080 Pisum sativum HOM05D008370 ORTHO05D009732 3.3e-07 58.2 76 48.7
Psat7g050120 Pisum sativum HOM05D010746 ORTHO05D009732 3.3e-07 58.2 75 49.3
MD01G1015700 Malus domestica HOM05D008370 ORTHO05D009732 4.4e-07 57.8 74 45.9
Prupe.6G166400 Prunus persica HOM05D008370 ORTHO05D009732 5.7e-07 57.4 80 51.2
Glyma.06G148100 Glycine max HOM05D008370 ORTHO05D009732 7.4e-07 57.0 82 46.3
MD15G1335300 Malus domestica HOM05D015647 ORTHO05D009732 7.4e-07 57.0 85 42.4
Duzib187G1656 Durio zibethinus HOM05D008370 ORTHO05D009732 9.7e-07 56.6 72 48.6
Glyma.04G217800 Glycine max HOM05D008370 ORTHO05D009732 9.7e-07 56.6 76 48.7
Gohir.D01G030000 Gossypium hirsutum HOM05D008370 ORTHO05D009732 1.3e-06 56.2 76 48.7
Gohir.A02G136703 Gossypium hirsutum HOM05D008370 ORTHO05D009732 1.7e-06 55.8 79 50.6
QL06p031372 Quercus lobata HOM05D008370 ORTHO05D009732 1.7e-06 55.8 73 45.2
Eucgr.I00294 Eucalyptus grandis HOM05D008370 ORTHO05D009732 3.7e-06 54.7 73 46.6
FvH4_1g23211 Fragaria vesca HOM05D024037 ORTHO05D009732 3.7e-06 54.7 79 44.3
arahy.Tifrunner.gnm1.ann1.3XNV5U Arachis hypogaea HOM05D008370 ORTHO05D009732 4.8e-06 54.3 77 49.4
RcHm_v2.0_Chr2g0118101 Rosa chinensis HOM05D015647 ORTHO05D009732 4.8e-06 54.3 77 46.8
arahy.Tifrunner.gnm1.ann1.Z046N5 Arachis hypogaea HOM05D010746 ORTHO05D009732 6.3e-06 53.9 80 46.2
Phvul.009G138100 Phaseolus vulgaris HOM05D010746 ORTHO05D009732 8.2e-06 53.5 79 41.8


User provided reference genes

Program Settings