Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G078600 Carya illinoinensis HOM05D006516 ORTHO05D008083 6.4e-152 540.8 291 100.0
CiPaw.03G117200 Carya illinoinensis HOM05D006516 ORTHO05D008083 4.7e-102 375.2 343 66.2
Cfa002190 Carpinus fangiana HOM05D006516 ORTHO05D008083 2.4e-82 309.7 420 50.2
Haze_25362 Corylus avellana HOM05D006516 ORTHO05D008083 4.1e-74 282.3 338 53.8
Sabra07G0082800 Salix brachista HOM05D006516 ORTHO05D008083 2.9e-72 276.2 327 55.7
Prupe.4G278200 Prunus persica HOM05D006516 ORTHO05D008083 3.8e-72 275.8 350 54.6
Potri.007G099900 Populus trichocarpa HOM05D006516 ORTHO05D008083 2.5e-71 273.1 326 56.4
CSS0037144 Camellia sinensis var. sinensis HOM05D006516 ORTHO05D008083 3.6e-70 269.2 346 53.5
FAN26G1784 Fragaria x ananassa HOM05D006516 ORTHO05D008083 4.7e-70 268.9 255 60.4
TAR628G0816 Trochodendron aralioides HOM05D006516 ORTHO05D008083 1.0e-69 267.7 354 55.4
RcHm_v2.0_Chr2g0122781 Rosa chinensis HOM05D006516 ORTHO05D008083 2.3e-69 266.5 339 53.1
FAN28G2638 Fragaria x ananassa HOM05D006516 ORTHO05D008083 2.6e-68 263.1 255 59.2
Gohir.D04G033500 Gossypium hirsutum HOM05D006516 ORTHO05D008083 9.8e-68 261.2 348 52.9
Atru.chr4.1049 Acer truncatum HOM05D006516 ORTHO05D008083 1.3e-67 260.8 326 53.1
Gohir.A05G381800 Gossypium hirsutum HOM05D006516 ORTHO05D008083 1.3e-67 260.8 348 52.9
BcaC09g52164 Brassica carinata HOM05D006516 ORTHO05D008083 2.8e-67 259.6 338 52.4
MD00G1064700 Malus domestica HOM05D006516 ORTHO05D008083 8.3e-67 258.1 352 53.1
EL10Ac4g09645 Beta vulgaris HOM05D006516 ORTHO05D008083 1.1e-66 257.7 257 54.5
Dinv30343 Davidia involucrata HOM05D006516 ORTHO05D008083 1.4e-66 257.3 342 52.9
Thecc.01G139400 Theobroma cacao HOM05D006516 ORTHO05D008083 2.4e-66 256.5 345 53.0
Carub.0007s0699 Capsella rubella HOM05D006516 ORTHO05D008083 4.1e-66 255.8 345 51.9
CANSAT01G0949 Cannabis sativa HOM05D006516 ORTHO05D008083 5.4e-66 255.4 348 48.6
QL10p040847 Quercus lobata HOM05D006516 ORTHO05D008083 5.4e-66 255.4 340 51.8
PGR119G1413 Punica granatum HOM05D006516 ORTHO05D008083 7.0e-66 255.0 343 53.4
AL7G18070 Arabidopsis lyrata HOM05D006516 ORTHO05D008083 9.2e-66 254.6 347 52.2
Sopen04g007550 Solanum pennellii HOM05D006516 ORTHO05D008083 9.2e-66 254.6 286 54.9
Eucgr.I00111 Eucalyptus grandis HOM05D006516 ORTHO05D008083 1.2e-65 254.2 338 49.1
AT4G33480 Arabidopsis thaliana HOM05D006516 ORTHO05D008083 1.6e-65 253.8 341 47.5
TWI31G0808 Tripterygium wilfordii HOM05D006516 ORTHO05D008083 5.9e-65 251.9 218 61.9
PSO170G3530 Papaver somniferum HOM05D006516 ORTHO05D008083 7.8e-65 251.5 242 58.3
MELO3C023197.2 Cucumis melo HOM05D006516 ORTHO05D008083 1.0e-64 251.1 337 51.9
Solyc04g015480.3 Solanum lycopersicum HOM05D006516 ORTHO05D008083 1.7e-64 250.4 341 51.0
C01p05200 Brassica napus HOM05D006516 ORTHO05D008083 2.3e-64 250.0 339 48.1
Manes.12G147400 Manihot esculenta HOM05D006516 ORTHO05D008083 3.9e-64 249.2 333 53.5
Sc06g0006730 Simmondsia chinensis HOM05D006516 ORTHO05D008083 3.9e-64 249.2 253 56.1
CARHR241560 Cardamine hirsuta HOM05D006516 ORTHO05D008083 5.0e-64 248.8 343 49.9
CsaV3_2G019760 Cucumis sativus L. HOM05D006516 ORTHO05D008083 1.5e-63 247.3 335 51.3
Ciclev10001875m.g Citrus clementina HOM05D006516 ORTHO05D008083 2.5e-63 246.5 230 59.6
FAN19G1952 Fragaria x ananassa HOM05D006516 ORTHO05D008083 9.5e-63 244.6 224 62.1
Oeu011021.1 Olea europaea HOM05D006516 ORTHO05D008083 2.1e-62 243.4 247 54.3
BraA01t00462Z Brassica rapa HOM05D006516 ORTHO05D008083 3.6e-62 242.7 290 52.1
THA.LOC104804401 Tarenaya hassleriana HOM05D006516 ORTHO05D008083 6.1e-62 241.9 260 54.6
CDE08G1595 Ceratophyllum demersum HOM05D006516 ORTHO05D008083 8.0e-62 241.5 219 58.0
AUR62000533 Chenopodium quinoa HOM05D006516 ORTHO05D008083 1.4e-61 240.7 244 54.1
MSTRG.23495 Avicennia marina HOM05D006516 ORTHO05D008083 6.8e-61 238.4 259 52.1
A01p04790 Brassica napus HOM05D006516 ORTHO05D008083 6.8e-61 238.4 255 53.7
Cpa.g.sc37.17 Carica papaya HOM05D006516 ORTHO05D008083 1.2e-60 237.7 353 50.4
HanXRQChr15g0469261 Helianthus annuus HOM05D006516 ORTHO05D008083 2.0e-60 236.9 232 56.0
Lalb_Chr13g0296721 Lupinus albus HOM05D006516 ORTHO05D008083 3.4e-60 236.1 324 48.1
GSVIVG01022337001 Vitis vinifera HOM05D006516 ORTHO05D008083 3.4e-60 236.1 141 83.7
FAN23G2617 Fragaria x ananassa HOM05D006516 ORTHO05D008083 4.4e-60 235.7 243 56.8
Aqoxy6G00267 Aquilegia oxysepala HOM05D006516 ORTHO05D008083 7.5e-60 235.0 219 57.5
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 2.2e-59 233.4 248 51.6
DCAR_019988 Daucus carota HOM05D006516 ORTHO05D008083 2.2e-59 233.4 320 50.0
BolC1t00500H Brassica oleracea HOM05D006516 ORTHO05D008021 2.9e-59 233.0 324 46.3
Lsat_1_v5_gn_5_69121 Lactuca sativa HOM05D006516 ORTHO05D008083 2.9e-59 233.0 215 58.6
Sed0013830 Sechium edule HOM05D006516 ORTHO05D008083 6.4e-59 231.9 221 57.5
Migut.H00817 Erythranthe guttata HOM05D006516 ORTHO05D008083 1.4e-58 230.7 222 57.2
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 1.9e-58 230.3 139 79.1
PSO063G7430 Papaver somniferum HOM05D006516 ORTHO05D008083 7.0e-58 228.4 139 81.3
PSO528G0185 Papaver somniferum HOM05D006516 ORTHO05D008083 7.0e-58 228.4 139 81.3
Glyma.05G194700 Glycine max HOM05D006516 ORTHO05D008083 1.3e-56 224.2 317 47.3
Cc02_g33920 Coffea canephora HOM05D006516 ORTHO05D008083 1.7e-56 223.8 139 78.4
unitig_899.g15157 Utricularia gibba HOM05D006516 ORTHO05D008083 1.7e-56 223.8 237 50.6
arahy.Tifrunner.gnm1.ann1.YP7URC Arachis hypogaea HOM05D006516 ORTHO05D008083 1.5e-55 220.7 133 78.9
Lj4g0011477 Lotus japonicus HOM05D006516 ORTHO05D008083 1.5e-55 220.7 305 46.9
Hund07224 Selenicereus undatus HOM05D006516 ORTHO05D008083 1.5e-55 220.7 225 54.7
ECA233G3512 Erigeron canadensis HOM05D000595 ORTHO05D006275 1.9e-55 220.3 346 47.4
SGA_v2.0_scaffold54G19604 Striga asiatica HOM05D006516 ORTHO05D008083 4.3e-55 219.2 212 55.7
Actinidia20043 Actinidia chinensis HOM05D006516 ORTHO05D008083 5.6e-55 218.8 336 45.5
Lalb_Chr08g0238111 Lupinus albus HOM05D006516 ORTHO05D008083 5.6e-55 218.8 218 55.5
Medtr8g094200 Medicago truncatula HOM05D006516 ORTHO05D008083 9.5e-55 218.0 246 50.0
Actinidia06588 Actinidia chinensis HOM05D006516 ORTHO05D008083 1.4e-53 214.2 339 46.0
Nitab4.5_0001663g0100 Nicotiana tabacum HOM05D006516 ORTHO05D008083 2.3e-53 213.4 246 52.4
arahy.Tifrunner.gnm1.ann1.I5MJF2 Arachis hypogaea HOM05D006516 ORTHO05D008083 3.1e-53 213.0 216 55.6
arahy.Tifrunner.gnm1.ann1.8KJ0MH Arachis hypogaea HOM05D006516 ORTHO05D008083 2.0e-52 210.3 123 79.7
Gorai.012G037800 Gossypium raimondii HOM05D006516 ORTHO05D008083 1.7e-51 207.2 310 48.7
Duzib147G1587 Durio zibethinus HOM05D006516 ORTHO05D008083 5.4e-50 202.2 353 45.0
CAN.G676.43 Capsicum annuum HOM05D006516 ORTHO05D008083 1.2e-49 201.1 221 53.8
arahy.Tifrunner.gnm1.ann1.5F6SWA Arachis hypogaea HOM05D006516 ORTHO05D008083 4.6e-49 199.1 230 52.2
Glyma.06G156800 Glycine max HOM05D006516 ORTHO05D008083 1.3e-48 197.6 334 43.4
Ca_17618_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 2.3e-48 196.8 205 50.7
Thhalv10025682m.g Eutrema salsugineum HOM05D006516 ORTHO05D008083 3.0e-48 196.4 305 45.9
TPR.G37339 Trifolium pratense HOM05D006516 ORTHO05D008083 1.9e-47 193.7 135 65.2
Psat5g086920 Pisum sativum HOM05D006516 ORTHO05D008083 4.3e-47 192.6 218 50.9
Zm00001eb434490 Zea mays HOM05D006516 ORTHO05D008083 9.5e-47 191.4 214 48.6
VMungo1309G1214 Vigna mungo HOM05D006516 ORTHO05D008083 1.2e-46 191.0 222 50.5
MBI06_g45441_MAGBIO Magnolia biondii HOM05D006516 ORTHO05D008083 1.6e-46 190.7 175 64.0
Lj1g0010918 Lotus japonicus HOM05D006516 ORTHO05D008083 2.1e-46 190.3 212 50.5
COL.COLO4_12072 Corchorus olitorius HOM05D006516 ORTHO05D008083 1.4e-45 187.6 351 43.3
FvH4_1g25120 Fragaria vesca HOM05D006516 ORTHO05D008083 1.8e-45 187.2 176 56.8
PGSC0003DMG400027234 Solanum tuberosum HOM05D006516 ORTHO05D008083 6.8e-45 185.3 369 40.4
AUR62006880 Chenopodium quinoa HOM05D006516 ORTHO05D008083 9.9e-44 181.4 348 37.4
Psat7g044240 Pisum sativum HOM05D006516 ORTHO05D008083 1.7e-43 180.6 333 37.8
Medtr3g096860 Medicago truncatula HOM05D006516 ORTHO05D008083 2.1e-38 163.7 196 48.5
Mapoly0149s0016 Marchantia polymorpha HOM05D006516 ORTHO05D008083 4.7e-38 162.5 215 41.9
Ca_16991_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 4.4e-36 156.0 263 40.3
Ca_17019_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 4.4e-36 156.0 263 40.3
Pp3c3_32640 Physcomitrium patens HOM05D006516 ORTHO05D008083 9.9e-36 154.8 236 39.8
AagrBONN_evm.TU.Sc2ySwM_369.382 Anthoceros agrestis HOM05D006516 ORTHO05D008083 1.3e-35 154.5 218 41.7
Nn1g08902 Nelumbo nucifera HOM05D006516 ORTHO05D008083 6.4e-35 152.1 90 83.3
Aa31sc146G50 Aethionema arabicum HOM05D006516 ORTHO05D008083 1.4e-34 151.0 91 79.1
Phvul.009G153500 Phaseolus vulgaris HOM05D006516 ORTHO05D008083 4.2e-34 149.4 184 47.3
TPR.G33574 Trifolium pratense HOM05D006516 ORTHO05D008083 3.3e-31 139.8 171 47.4
ATR0138G020 Amborella trichopoda HOM05D006516 ORTHO05D008083 1.8e-29 134.0 171 45.0
Peaxi162Scf01713g00018 Petunia axillaris HOM05D006516 ORTHO05D008083 1.3e-24 117.9 239 38.9
Aa31sc146G60 Aethionema arabicum HOM05D006516 ORTHO05D008083 1.9e-23 114.0 244 38.1
Sp7g31210 Schrenkiella parvula HOM05D006516 ORTHO05D008083 3.3e-23 113.2 249 41.4
Peaxi162Scf01713g00017 Petunia axillaris HOM05D006516 ORTHO05D008083 4.3e-23 112.8 70 82.9
Rhsim10G0127700 Rhododendron simsii HOM05D006516 ORTHO05D008083 2.1e-22 110.5 131 48.9
Sp7g31200 Schrenkiella parvula HOM05D006516 ORTHO05D008083 3.8e-19 99.8 63 81.0
CBR_g51961 Chara braunii HOM05D006516 ORTHO05D008083 9.3e-18 95.1 123 39.8
Nitab4.5_0000733g0220 Nicotiana tabacum HOM05D006516 ORTHO05D008083 2.7e-17 93.6 306 31.0
Nn1g08886 Nelumbo nucifera HOM05D006516 ORTHO05D008083 7.9e-17 92.0 229 33.6
COL.COLO4_30311 Corchorus olitorius HOM05D000221 ORTHO05D008083 8.1e-14 82.0 55 67.3
PRCOL_00004760 Prasinoderma coloniale HOM05D006516 ORTHO05D008083 9.0e-13 78.6 118 34.7
ClCG02G000090 Citrullus lanatus HOM05D006516 ORTHO05D008083 4.5e-12 76.3 223 39.9
MBI06_g33106_MAGBIO Magnolia biondii HOM05D006516 ORTHO05D008083 7.6e-12 75.5 77 53.2
FAN28G1699 Fragaria x ananassa HOM05D006516 ORTHO05D008083 8.4e-11 72.0 49 81.6
MCO05G028 Micromonas commoda HOM05D006516 ORTHO05D008083 2.5e-07 60.5 122 32.8
ATR0138G010 Amborella trichopoda HOM05D006516 ORTHO05D008083 3.7e-06 56.6 32 90.6
Nn1g08901 Nelumbo nucifera HOM05D003028 ORTHO05D003465 3.7e-06 56.6 36 69.4


User provided reference genes

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