Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 2.4e-309 1064.7 540 100.0
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 4.1e-261 904.4 537 84.5
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 2.8e-249 865.1 534 82.2
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 2.9e-243 845.1 537 80.6
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 3.7e-238 828.2 540 76.7
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 2.8e-233 812.0 534 75.3
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 1.2e-231 806.6 540 75.0
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 4.4e-231 804.7 540 74.6
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 5.8e-231 804.3 538 74.7
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 7.5e-231 803.9 540 74.1
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.3e-230 803.1 540 74.1
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 2.9e-230 802.0 531 75.0
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 1.4e-229 799.7 537 75.0
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 1.2e-228 796.6 541 75.0
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 3.9e-227 791.6 532 74.6
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 1.1e-226 790.0 536 73.9
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 1.9e-226 789.3 558 71.1
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 7.3e-226 787.3 537 73.6
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 9.5e-226 786.9 531 74.2
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 3.1e-224 781.9 538 72.5
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 5.8e-223 777.7 537 73.0
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 1.7e-222 776.2 537 72.8
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 4.9e-222 774.6 537 71.9
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 6.4e-222 774.2 559 70.3
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 7.8e-220 767.3 533 72.0
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 8.9e-216 753.8 539 69.8
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 2.6e-215 752.3 536 70.9
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 7.6e-215 750.7 540 69.8
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 3.8e-214 748.4 538 70.1
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 2.4e-213 745.7 540 69.1
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 2.4e-213 745.7 541 70.1
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 2.1e-212 742.7 539 69.2
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 2.1e-212 742.7 534 69.3
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 7.8e-212 740.7 535 68.0
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 6.6e-211 737.6 586 65.7
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 6.6e-211 737.6 537 70.8
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 8.6e-211 737.3 536 68.7
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 8.6e-211 737.3 534 69.9
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 1.1e-210 736.9 532 70.3
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 1.9e-210 736.1 538 68.4
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 2.5e-210 735.7 540 69.4
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 6.9e-208 727.6 532 69.5
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 9.0e-208 727.2 535 67.3
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 2.9e-206 722.2 528 68.0
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 3.8e-206 721.8 551 65.9
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 1.1e-205 720.3 541 67.7
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 1.9e-205 719.5 549 68.1
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 6.0e-204 714.5 533 66.8
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 7.8e-204 714.1 528 66.5
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 2.3e-203 712.6 537 66.3
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 5.1e-203 711.4 532 67.3
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 2.1e-201 706.1 541 66.0
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 6.2e-201 704.5 529 66.2
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 2.4e-200 702.6 529 66.5
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 1.3e-198 696.8 530 64.9
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 1.4e-197 693.3 593 60.5
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 1.4e-197 693.3 537 67.8
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 4.2e-197 691.8 543 64.3
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 1.2e-196 690.3 592 62.0
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 1.3e-195 686.8 535 64.7
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 1.1e-194 683.7 507 69.0
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 1.1e-194 683.7 554 64.1
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 1.9e-194 682.9 566 63.4
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 2.5e-194 682.6 452 73.0
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 3.3e-194 682.2 535 63.9
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 3.3e-194 682.2 537 63.7
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 7.4e-194 681.0 535 64.5
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 8.1e-193 677.6 535 63.7
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 1.1e-192 677.2 535 64.3
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 6.9e-192 674.5 532 62.6
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 6.9e-192 674.5 540 63.3
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 4.2e-189 665.2 535 62.2
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 3.0e-187 659.1 529 63.5
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 1.5e-186 656.8 535 62.4
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 8.2e-185 651.0 505 64.0
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 6.9e-184 647.9 553 60.2
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 7.1e-181 637.9 448 71.0
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 2.6e-175 619.4 533 60.0
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 7.6e-175 617.8 531 60.3
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 1.2e-172 610.5 437 69.6
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 7.4e-170 601.3 537 58.5
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 3.7e-169 599.0 531 58.0
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 1.0e-166 590.9 537 57.5
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 1.0e-166 590.9 537 57.4
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 1.3e-166 590.5 531 57.4
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 1.7e-166 590.1 534 58.2
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 4.7e-164 582.0 535 56.4
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 3.7e-161 572.4 534 57.3
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 7.7e-159 564.7 537 56.1
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 8.5e-150 534.6 407 64.6
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 2.7e-148 529.6 569 53.8
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 2.6e-146 523.1 393 65.6
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 3.3e-146 522.7 412 62.6
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 8.0e-132 474.9 355 66.8
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 3.0e-131 473.0 355 66.5
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 8.3e-129 464.9 544 46.3
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 7.0e-128 461.8 534 44.8
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 4.3e-125 452.6 543 44.6
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 1.4e-123 447.6 497 49.7
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 3.2e-120 436.4 288 75.0
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 1.9e-109 400.6 290 70.3
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 4.1e-104 382.9 556 39.0
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 2.5e-101 373.6 465 43.2
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 3.1e-91 340.1 557 37.0
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 2.1e-84 317.4 307 56.4
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 3.4e-82 310.1 407 43.7
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 4.5e-82 309.7 205 76.6
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 1.2e-71 275.0 581 32.0
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 9.6e-69 265.4 212 62.7
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 2.6e-66 257.3 563 31.8
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 5.1e-62 243.0 546 32.8
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 2.8e-60 237.3 160 71.9
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 8.5e-57 225.7 150 72.7
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 8.8e-54 215.7 135 77.8
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 2.0e-50 204.5 130 76.9
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 6.5e-49 199.5 168 59.5
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 1.2e-42 178.7 141 66.0
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 5.5e-40 169.9 123 65.0
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 8.2e-36 156.0 113 70.8
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 1.0e-33 149.1 99 75.8
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 2.5e-32 144.4 85 84.7
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 2.8e-28 131.0 100 67.0
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 6.1e-23 113.2 451 26.4
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 8.0e-23 112.8 149 42.3
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 1.2e-15 89.0 115 48.7
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 1.6e-15 88.6 72 61.1
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 4.7e-15 87.0 71 60.6
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 8.0e-15 86.3 117 44.4
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 8.9e-14 82.8 71 57.7
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 8.9e-14 82.8 71 57.7
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 2.2e-12 78.2 66 60.6
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 1.6e-10 72.0 49 67.3
arahy.Tifrunner.gnm1.ann1.QJV3PU Arachis hypogaea HOM05D003356 ORTHO05D086117 5.0e-09 67.0 76 52.6
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 6.6e-09 66.6 68 52.9
BolC2t08947H Brassica oleracea HOM05D005625 ORTHO05D022022 1.2e-07 62.4 87 49.4
arahy.Tifrunner.gnm1.ann1.P90V4Z Arachis hypogaea HOM05D002479 ORTHO05D002675 1.4e-06 58.9 43 62.8
arahy.Tifrunner.gnm1.ann1.E660H8 Arachis hypogaea HOM05D005625 ORTHO05D007564 2.3e-06 58.2 64 50.0
arahy.Tifrunner.gnm1.ann1.KG76U8 Arachis hypogaea HOM05D005625 ORTHO05D007564 2.3e-06 58.2 64 50.0
Lsat_1_v5_gn_3_107600 Lactuca sativa HOM05D000629 ORTHO05D013393 2.3e-06 58.2 69 43.5


User provided reference genes

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