Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G061800 Carya illinoinensis HOM05D007220 ORTHO05D009058 1.2e-91 340.1 203 100.0
Cfa008220 Carpinus fangiana HOM05D007220 ORTHO05D009058 1.3e-66 256.9 204 69.6
Haze_13838 Corylus avellana HOM05D007220 ORTHO05D009058 1.1e-65 253.8 204 69.1
QL09p019051 Quercus lobata HOM05D007220 ORTHO05D009058 2.9e-58 229.2 204 75.0
ClCG05G007450 Citrullus lanatus HOM05D007220 ORTHO05D009058 5.8e-51 204.9 204 58.8
Manes.14G034000 Manihot esculenta HOM05D007220 ORTHO05D009058 8.4e-50 201.1 206 56.3
MELO3C006826.2 Cucumis melo HOM05D007220 ORTHO05D009058 4.2e-49 198.7 204 57.4
Dinv28549 Davidia involucrata HOM05D007220 ORTHO05D009058 1.2e-48 197.2 209 57.9
CsaV3_3G016270 Cucumis sativus L. HOM05D007220 ORTHO05D009058 7.9e-48 194.5 204 58.8
Eucgr.A02878 Eucalyptus grandis HOM05D007220 ORTHO05D009058 3.9e-47 192.2 197 60.4
Thecc.03G158900 Theobroma cacao HOM05D007220 ORTHO05D009058 8.7e-47 191.0 204 60.3
Potri.015G129600 Populus trichocarpa HOM05D007220 ORTHO05D009058 7.3e-46 188.0 203 64.5
TWI39G1186 Tripterygium wilfordii HOM05D007220 ORTHO05D009058 3.6e-45 185.7 204 54.4
COL.COLO4_14153 Corchorus olitorius HOM05D007220 ORTHO05D009058 1.8e-44 183.3 202 62.9
Sabra15G0142900 Salix brachista HOM05D007220 ORTHO05D009058 2.4e-44 183.0 203 62.1
GSVIVG01018558001 Vitis vinifera HOM05D007220 ORTHO05D009058 2.4e-44 183.0 185 56.8
Dinv22967 Davidia involucrata HOM05D007220 ORTHO05D009058 5.3e-44 181.8 210 54.3
Duzib205G1715 Durio zibethinus HOM05D007220 ORTHO05D009058 5.3e-44 181.8 205 53.2
PGR042G1708 Punica granatum HOM05D007220 ORTHO05D009058 9.0e-44 181.0 204 63.2
Gohir.D07G043100 Gossypium hirsutum HOM05D007220 ORTHO05D009058 4.5e-43 178.7 106 79.2
Gohir.A07G038900 Gossypium hirsutum HOM05D007220 ORTHO05D009058 7.6e-43 177.9 106 79.2
Gorai.001G046100 Gossypium raimondii HOM05D007220 ORTHO05D009058 7.6e-43 177.9 106 79.2
THA.LOC104811513 Tarenaya hassleriana HOM05D007220 ORTHO05D009058 1.3e-42 177.2 193 56.5
MD01G1184500 Malus domestica HOM05D007220 ORTHO05D009058 6.4e-42 174.9 205 54.1
Cpa.g.sc3.292 Carica papaya HOM05D007220 ORTHO05D009058 8.4e-42 174.5 205 60.5
MSTRG.27183 Avicennia marina HOM05D007220 ORTHO05D009058 2.4e-41 172.9 204 59.3
Cc02_g04040 Coffea canephora HOM05D007220 ORTHO05D009058 5.5e-41 171.8 226 49.6
arahy.Tifrunner.gnm1.ann1.0IXC5E Arachis hypogaea HOM05D007220 ORTHO05D009058 7.1e-41 171.4 106 78.3
Nn4g26358 Nelumbo nucifera HOM05D007220 ORTHO05D009058 1.2e-40 170.6 206 55.3
SalBow4G2286 Salvia bowleyana HOM05D007220 ORTHO05D009058 2.3e-39 166.4 197 56.3
Glyma.09G232600 Glycine max HOM05D007220 ORTHO05D009058 8.7e-39 164.5 174 54.6
Sc19g0001910 Simmondsia chinensis HOM05D007220 ORTHO05D009058 8.7e-39 164.5 204 51.0
FAN10G3220 Fragaria x ananassa HOM05D007220 ORTHO05D009058 1.1e-38 164.1 189 55.6
Actinidia25024 Actinidia chinensis HOM05D007220 ORTHO05D009058 1.5e-38 163.7 203 60.1
BcaB01g04168 Brassica carinata HOM05D007220 ORTHO05D009058 1.5e-38 163.7 203 53.7
FAN03G0488 Fragaria x ananassa HOM05D007220 ORTHO05D009058 2.5e-38 162.9 189 50.8
FAN03G2818 Fragaria x ananassa HOM05D007220 ORTHO05D009058 2.5e-38 162.9 189 50.8
AUR62016183 Chenopodium quinoa HOM05D007220 ORTHO05D009058 3.3e-38 162.5 209 50.2
Sp6g13740 Schrenkiella parvula HOM05D007220 ORTHO05D009058 4.3e-38 162.2 204 54.4
CAN.G152.17 Capsicum annuum HOM05D007220 ORTHO05D009058 5.6e-38 161.8 106 77.4
BcaC01g06128 Brassica carinata HOM05D007220 ORTHO05D009058 7.4e-38 161.4 203 47.8
C03p18980 Brassica napus HOM05D007220 ORTHO05D009058 7.4e-38 161.4 203 47.8
BolC3t14287H Brassica oleracea HOM05D007220 ORTHO05D009058 7.4e-38 161.4 203 47.8
FvH4_7g27960 Fragaria vesca HOM05D007220 ORTHO05D009058 7.4e-38 161.4 189 50.8
Atru.chr1.664 Acer truncatum HOM05D007220 ORTHO05D009058 9.6e-38 161.0 204 60.3
RcHm_v2.0_Chr1g0374911 Rosa chinensis HOM05D007220 ORTHO05D009058 9.6e-38 161.0 189 51.9
AL8G25850 Arabidopsis lyrata HOM05D007220 ORTHO05D009058 1.6e-37 160.2 203 46.3
FAN01G2832 Fragaria x ananassa HOM05D007220 ORTHO05D009058 1.6e-37 160.2 172 56.4
FAN06G4318 Fragaria x ananassa HOM05D007220 ORTHO05D009058 2.8e-37 159.5 189 50.3
SGA_v2.0_scaffold2G01175 Striga asiatica HOM05D007220 ORTHO05D009058 3.7e-37 159.1 203 55.7
FAN06G0674 Fragaria x ananassa HOM05D007220 ORTHO05D009058 6.2e-37 158.3 189 54.5
Nitab4.5_0000072g0560 Nicotiana tabacum HOM05D007220 ORTHO05D009058 1.1e-36 157.5 106 75.5
BraA03t10902Z Brassica rapa HOM05D007220 ORTHO05D009058 2.4e-36 156.4 204 47.5
Nitab4.5_0001548g0050 Nicotiana tabacum HOM05D007220 ORTHO05D009058 3.1e-36 156.0 185 51.4
CSS0026352 Camellia sinensis var. sinensis HOM05D007220 ORTHO05D009058 4.0e-36 155.6 107 72.0
HanXRQChr08g0223851 Helianthus annuus HOM05D007220 ORTHO05D009058 9.0e-36 154.5 205 48.8
Carub.0008s1158 Capsella rubella HOM05D007220 ORTHO05D009058 1.2e-35 154.1 204 45.1
Phvul.011G004500 Phaseolus vulgaris HOM05D007220 ORTHO05D009058 2.0e-35 153.3 106 70.8
VMungo1127G0384 Vigna mungo HOM05D007220 ORTHO05D009058 2.0e-35 153.3 191 56.5
EL10Ac3g05813 Beta vulgaris HOM05D007220 ORTHO05D009058 2.6e-35 152.9 211 47.9
Solyc03g083570.3 Solanum lycopersicum HOM05D007220 ORTHO05D009058 2.6e-35 152.9 107 72.9
Sopen03g023380 Solanum pennellii HOM05D007220 ORTHO05D009058 2.6e-35 152.9 107 72.9
vmacro09892 Vaccinium macrocarpon HOM05D007220 ORTHO05D009058 3.4e-35 152.5 211 48.3
Peaxi162Scf00241g00624 Petunia axillaris HOM05D007220 ORTHO05D009058 4.5e-35 152.1 204 50.0
Ciclev10005924m.g Citrus clementina HOM05D007220 ORTHO05D009058 5.8e-35 151.8 208 50.0
unitig_46.g18768 Utricularia gibba HOM05D007220 ORTHO05D009058 7.6e-35 151.4 166 50.6
A03p16110 Brassica napus HOM05D007220 ORTHO05D009058 1.0e-34 151.0 203 54.2
SGA_v2.0_scaffold486G52391 Striga asiatica HOM05D007220 ORTHO05D009058 1.3e-34 150.6 203 47.3
AT5G51545 Arabidopsis thaliana HOM05D007220 ORTHO05D009058 1.7e-34 150.2 203 44.8
Rhsim09G0192800 Rhododendron simsii HOM05D007220 ORTHO05D009058 1.1e-33 147.5 216 46.8
Migut.F00451 Erythranthe guttata HOM05D007220 ORTHO05D009058 2.5e-33 146.4 106 66.0
Aqoxy7G00673 Aquilegia oxysepala HOM05D007220 ORTHO05D009058 3.2e-33 146.0 98 68.4
Lsat_1_v5_gn_8_9340 Lactuca sativa HOM05D007220 ORTHO05D009058 3.2e-33 146.0 207 46.9
CARHR264320 Cardamine hirsuta HOM05D007220 ORTHO05D009058 5.5e-33 145.2 100 67.0
ECA233G2338 Erigeron canadensis HOM05D007220 ORTHO05D009058 5.5e-33 145.2 106 67.0
Aa31LG3G7960 Aethionema arabicum HOM05D007220 ORTHO05D009058 7.1e-33 144.8 203 55.7
Ca_30916_v3 Cicer arietinum L. HOM05D007220 ORTHO05D009058 3.5e-32 142.5 172 48.8
Lj8A39T34 Lonicera japonica HOM05D007220 ORTHO05D009058 1.3e-31 140.6 108 66.7
Lj3g0016008 Lotus japonicus HOM05D007220 ORTHO05D009058 1.8e-31 140.2 106 64.2
Medtr4g035825 Medicago truncatula HOM05D007220 ORTHO05D009058 3.0e-31 139.4 205 43.9
arahy.Tifrunner.gnm1.ann1.83G6QR Arachis hypogaea HOM05D007220 ORTHO05D009058 3.9e-31 139.0 80 81.2
Psat7g150000 Pisum sativum HOM05D007220 ORTHO05D009058 8.7e-31 137.9 203 48.8
PSO782G3417 Papaver somniferum HOM05D007220 ORTHO05D009058 5.7e-30 135.2 107 57.0
PSO478G4327 Papaver somniferum HOM05D007220 ORTHO05D009058 2.8e-29 132.9 107 55.1
CDE09G0763 Ceratophyllum demersum HOM05D007220 ORTHO05D009058 4.1e-28 129.0 197 43.1
SEGI_29714 Sequoiadendron giganteum HOM05D007220 ORTHO05D009058 1.0e-26 124.4 98 65.3
HPP92_002073 Vanilla planifolia HOM05D007220 ORTHO05D009058 1.4e-25 120.6 101 56.4
PGSC0003DMG400023001 Solanum tuberosum HOM05D007220 ORTHO05D009058 5.5e-25 118.6 174 43.7
Zm00001eb230760 Zea mays HOM05D007220 ORTHO05D009058 7.2e-25 118.2 78 71.8
AUR62035102 Chenopodium quinoa HOM05D007220 ORTHO05D009058 3.0e-23 112.8 208 40.9
Potri.012G128000 Populus trichocarpa HOM05D007220 ORTHO05D009058 3.0e-23 112.8 209 51.7
Prupe.2G280700 Prunus persica HOM05D007220 ORTHO05D009058 5.1e-23 112.1 154 44.2
Sed0003033 Sechium edule HOM05D007220 ORTHO05D009058 1.1e-22 110.9 158 50.0
ATR0730G016 Amborella trichopoda HOM05D007220 ORTHO05D009058 2.4e-20 103.2 64 78.1
TPR.G15117 Trifolium pratense HOM05D007220 ORTHO05D009058 2.4e-20 103.2 102 54.9
TAR629G2293 Trochodendron aralioides HOM05D007220 ORTHO05D009058 1.0e-18 97.8 149 43.6
DCAR_009422 Daucus carota HOM05D007220 ORTHO05D009058 2.5e-17 93.2 158 40.5
DCAR_009423 Daucus carota HOM05D007220 ORTHO05D009058 2.5e-17 93.2 158 40.5
MD07G1256600 Malus domestica HOM05D007220 ORTHO05D009058 2.5e-14 83.2 53 71.7
AagrBONN_evm.TU.Sc2ySwM_228.5821 Anthoceros agrestis HOM05D007220 ORTHO05D009058 7.4e-14 81.6 89 47.2
MBI12_g20320_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 7.4e-14 81.6 44 81.8
Pp3c26_11240 Physcomitrium patens HOM05D007220 ORTHO05D009058 1.7e-13 80.5 96 44.8
Mapoly0002s0242 Marchantia polymorpha HOM05D007220 ORTHO05D009058 4.1e-12 75.9 76 47.4
HanXRQChr04g0107801 Helianthus annuus HOM05D000901 ORTHO05D001160 7.7e-11 71.6 149 34.9
MBI12_g14970_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 1.3e-10 70.9 60 60.0
MBI12_g25331_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 1.4e-09 67.4 62 56.5
Ca_20051_v3 Cicer arietinum L. HOM05D007220 ORTHO05D009058 5.5e-09 65.5 124 37.9
Ah.07g208070 Amaranthus hybridus HOM05D000130 ORTHO05D009058 4.4e-06 55.8 160 51.2


User provided reference genes

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