Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 5.6e-281 970.3 502 100.0
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 7.6e-193 677.6 475 77.5
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 6.4e-192 674.5 477 76.9
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 4.1e-191 671.8 481 75.9
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 8.1e-187 657.5 475 76.0
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 7.9e-174 614.4 470 71.1
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 1.3e-173 613.6 468 71.6
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 5.5e-167 591.7 466 70.6
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 7.4e-164 581.3 477 67.3
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 6.2e-163 578.2 468 68.8
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 9.0e-162 574.3 466 68.2
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 1.5e-161 573.5 466 68.2
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 5.8e-161 571.6 469 68.0
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 1.3e-157 560.5 470 67.4
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 2.2e-155 553.1 481 67.2
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 6.9e-154 548.1 477 65.8
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.0e-153 546.6 466 67.0
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 7.6e-153 544.7 491 64.6
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 1.0e-152 544.3 479 65.3
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 5.0e-152 542.0 477 65.2
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 9.4e-151 537.7 491 64.0
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 3.0e-149 532.7 491 63.5
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 2.5e-148 529.6 465 64.5
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 3.3e-148 529.3 465 64.5
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 4.1e-146 522.3 508 60.8
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 4.1e-146 522.3 477 62.5
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 3.4e-145 519.2 508 60.6
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 1.3e-144 517.3 472 64.2
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 1.4e-143 513.8 472 63.6
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 6.1e-142 508.4 508 59.8
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 3.9e-141 505.8 466 62.0
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 2.6e-140 503.1 520 57.3
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 2.6e-140 503.1 520 57.3
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 3.7e-139 499.2 517 58.2
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 3.1e-138 496.1 470 61.3
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 7.0e-138 495.0 469 60.8
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 7.7e-137 491.5 508 58.1
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 1.4e-135 487.3 511 57.1
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 7.2e-135 485.0 466 61.6
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 6.1e-134 481.9 521 56.0
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 2.6e-132 476.5 470 61.1
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 7.4e-132 474.9 507 57.6
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 9.7e-132 474.6 523 55.8
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 9.7e-132 474.6 468 59.4
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 2.8e-131 473.0 523 55.6
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 3.7e-131 472.6 504 56.9
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 1.4e-130 470.7 468 57.9
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 1.4e-130 470.7 468 59.2
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 1.8e-130 470.3 389 68.9
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 2.4e-130 469.9 476 57.6
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 4.1e-130 469.2 466 59.7
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 4.1e-130 469.2 465 60.2
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 7.0e-130 468.4 480 58.1
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 9.1e-130 468.0 478 57.1
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 1.6e-129 467.2 468 58.5
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 2.6e-129 466.5 484 58.1
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 3.8e-128 462.6 471 56.9
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 1.9e-127 460.3 495 58.2
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 9.4e-127 458.0 466 58.8
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 1.4e-125 454.1 487 56.5
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 1.8e-125 453.8 491 56.8
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 1.8e-125 453.8 466 58.6
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 5.2e-125 452.2 468 56.4
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 6.7e-125 451.8 510 54.3
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 2.0e-124 450.3 481 57.0
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 8.2e-123 444.9 458 59.6
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 2.0e-121 440.3 466 56.4
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 2.0e-121 440.3 467 55.2
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 7.7e-121 438.3 452 58.2
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 2.2e-120 436.8 469 56.7
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 1.5e-119 434.1 482 55.0
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 5.5e-119 432.2 471 56.7
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 1.2e-118 431.0 466 56.2
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 1.6e-118 430.6 461 57.3
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 1.0e-117 427.9 468 57.3
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 8.8e-117 424.9 465 55.9
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 1.2e-116 424.5 465 57.0
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 1.2e-116 424.5 465 57.0
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 7.5e-116 421.8 465 56.6
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 2.2e-115 420.2 466 55.8
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 2.8e-115 419.9 468 55.6
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 1.1e-114 417.9 465 56.3
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 1.1e-114 417.9 465 56.3
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 1.1e-114 417.9 493 53.3
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 2.4e-114 416.8 472 54.4
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 1.2e-113 414.5 540 50.6
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 3.5e-113 412.9 505 52.5
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 7.2e-111 405.2 522 50.0
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 1.6e-110 404.1 460 54.3
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 1.3e-107 394.4 463 51.8
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 9.2e-106 388.3 475 51.6
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 4.5e-105 386.0 387 58.1
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 4.4e-100 369.4 390 59.0
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 1.7e-99 367.5 603 41.5
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 7.0e-98 362.1 470 49.1
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 1.8e-93 347.4 255 71.8
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 5.8e-92 342.4 253 71.1
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 1.3e-83 314.7 312 59.9
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 6.0e-81 305.8 603 39.6
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 7.3e-79 298.9 282 59.9
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.2e-78 298.1 271 63.1
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.2e-78 298.1 271 63.1
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 4.4e-76 289.7 224 70.5
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 1.1e-71 275.0 384 45.6
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 1.9e-71 274.2 259 62.2
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 3.2e-66 256.9 224 65.2
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.8e-53 214.5 224 54.5
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 3.1e-53 213.8 446 35.4
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 9.9e-52 208.8 221 57.9
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.3e-51 208.4 151 70.9
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 1.4e-50 204.9 245 53.1
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 2.9e-43 180.6 174 60.3
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 2.7e-41 174.1 238 49.2
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 1.5e-39 168.3 138 63.8
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 1.2e-36 158.7 129 64.3
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 4.2e-34 150.2 119 67.2
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 2.7e-33 147.5 122 65.6
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 6.5e-27 126.3 163 49.7
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 2.6e-23 114.4 231 40.7
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 1.3e-22 112.1 354 28.8
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 3.7e-22 110.5 166 47.6
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 5.0e-19 100.1 70 74.3
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.5e-15 88.6 119 49.6
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 4.5e-12 77.0 71 57.7
Cpa.g.sc14.174 Carica papaya HOM05D006007 ORTHO05D007518 2.2e-11 74.7 81 48.1
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 3.8e-11 73.9 152 39.5
PSO210G4406 Papaver somniferum HOM05D000032 ORTHO05D005217 8.8e-08 62.8 178 32.0
CBR_g1094 Chara braunii HOM05D000032 ORTHO05D005217 1.3e-06 58.9 167 29.3
PSO832G1396 Papaver somniferum HOM05D000032 ORTHO05D005217 2.8e-06 57.8 173 31.8


User provided reference genes

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