Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G053900 Carya illinoinensis HOM05D003380 ORTHO05D004232 1.4e-23 112.1 56 100.0
CiPaw.15G028500 Carya illinoinensis HOM05D003380 ORTHO05D004232 1.1e-12 75.9 38 97.4
CiPaw.07G209900 Carya illinoinensis HOM05D003380 ORTHO05D004232 1.5e-12 75.5 38 97.4
QL12p025844 Quercus lobata HOM05D003380 ORTHO05D004232 4.7e-11 70.5 38 89.5
CiPaw.08G021300 Carya illinoinensis HOM05D003380 ORTHO05D004232 6.2e-11 70.1 38 92.1
Cfa010143 Carpinus fangiana HOM05D003380 ORTHO05D004232 1.4e-10 68.9 38 86.8
Haze_23534 Corylus avellana HOM05D004783 ORTHO05D005581 1.4e-10 68.9 38 86.8
Thecc.09G002600 Theobroma cacao HOM05D003380 ORTHO05D004232 2.3e-10 68.2 38 92.1
Atru.chr7.2690 Acer truncatum HOM05D003380 ORTHO05D004232 3.1e-10 67.8 39 89.7
THA.LOC104803586 Tarenaya hassleriana HOM05D003380 ORTHO05D004232 4.0e-10 67.4 38 92.1
Atru.chr13.1615 Acer truncatum HOM05D003380 ORTHO05D004232 5.2e-10 67.0 39 87.2
Ciclev10009349m.g Citrus clementina HOM05D003380 ORTHO05D004232 6.8e-10 66.6 38 86.8
Gohir.D05G068600 Gossypium hirsutum HOM05D003380 ORTHO05D004232 6.8e-10 66.6 38 89.5
Gorai.009G069600 Gossypium raimondii HOM05D003380 ORTHO05D004232 6.8e-10 66.6 38 89.5
Dinv26471 Davidia involucrata HOM05D003380 ORTHO05D004232 8.9e-10 66.2 38 86.8
Lj4A319G22 Lonicera japonica HOM05D003380 ORTHO05D004232 8.9e-10 66.2 38 86.8
Lj6A275T63 Lonicera japonica HOM05D003380 ORTHO05D004232 8.9e-10 66.2 38 86.8
Lj6C279G2 Lonicera japonica HOM05D003380 ORTHO05D004232 8.9e-10 66.2 38 86.8
Sed0024231 Sechium edule HOM05D003380 ORTHO05D004232 8.9e-10 66.2 38 89.5
TAR383G1016 Trochodendron aralioides HOM05D003380 ORTHO05D004232 8.9e-10 66.2 38 92.1
Atru.chr7.2666 Acer truncatum HOM05D003380 ORTHO05D004232 1.2e-09 65.9 39 87.2
Cpa.g.sc148.3 Carica papaya HOM05D003380 ORTHO05D004232 1.2e-09 65.9 38 89.5
ClCG08G012530 Citrullus lanatus HOM05D003380 ORTHO05D004232 1.2e-09 65.9 38 89.5
Actinidia02482 Actinidia chinensis HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 84.2
Aa31LG2G19070 Aethionema arabicum HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
AL7G20780 Arabidopsis lyrata HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
AT4G31300 Arabidopsis thaliana HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
BcaB03g12688 Brassica carinata HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
BcaC09g51907 Brassica carinata HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
BcaNung01533 Brassica carinata HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
BcaNung05317 Brassica carinata HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
A01p07000 Brassica napus HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
A03p60610 Brassica napus HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
A08p18700 Brassica napus HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
C01p07730 Brassica napus HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
C07p58510 Brassica napus HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
BolC1t00756H Brassica oleracea HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
BolC3t21119H Brassica oleracea HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
BolC7t46306H Brassica oleracea HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
BraA01t00651Z Brassica rapa HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
BraA03t15102Z Brassica rapa HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
BraA08t33831Z Brassica rapa HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
Carub.0007s0926 Capsella rubella HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
CARHR239170 Cardamine hirsuta HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
COL.COLO4_18628 Corchorus olitorius HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 86.8
MELO3C011172.2 Cucumis melo HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
CsaV3_2G031230 Cucumis sativus L. HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
DCAR_000673 Daucus carota HOM05D003380 ORTHO05D004232 1.5e-09 65.5 36 86.1
Migut.J00835 Erythranthe guttata HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 86.8
Thhalv10026126m.g Eutrema salsugineum HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
Medtr3g109210 Medicago truncatula HOM05D003380 ORTHO05D004232 1.5e-09 65.5 36 86.1
Sp7g29150 Schrenkiella parvula HOM05D003380 ORTHO05D004232 1.5e-09 65.5 38 89.5
arahy.Tifrunner.gnm1.ann1.21Q806 Arachis hypogaea HOM05D003380 ORTHO05D004232 2.0e-09 65.1 34 91.2
arahy.Tifrunner.gnm1.ann1.AGKE2S Arachis hypogaea HOM05D003380 ORTHO05D004232 2.0e-09 65.1 34 91.2
BcaC01g01103 Brassica carinata HOM05D003380 ORTHO05D004232 2.0e-09 65.1 38 86.8
C03p88100 Brassica napus HOM05D003380 ORTHO05D004232 2.0e-09 65.1 38 86.8
Dinv12605 Davidia involucrata HOM05D003380 ORTHO05D004232 2.0e-09 65.1 38 84.2
Duzib150G0262 Durio zibethinus HOM05D003380 ORTHO05D004232 2.0e-09 65.1 38 86.8
Gohir.A13G181700 Gossypium hirsutum HOM05D003380 ORTHO05D004232 2.0e-09 65.1 38 86.8
Gohir.D13G185700 Gossypium hirsutum HOM05D003380 ORTHO05D004232 2.0e-09 65.1 38 86.8
Gorai.013G211700 Gossypium raimondii HOM05D003380 ORTHO05D004232 2.0e-09 65.1 38 86.8
Hma1.2p1_0443F.1_g154000 Hydrangea macrophylla HOM05D003380 ORTHO05D004232 2.0e-09 65.1 38 84.2
Oeu036948.2 Olea europaea HOM05D003380 ORTHO05D004232 2.0e-09 65.1 38 84.2
SGA_v2.0_scaffold21G09610 Striga asiatica HOM05D003380 ORTHO05D004232 2.0e-09 65.1 38 84.2
SGA_v2.0_scaffold450G51802 Striga asiatica HOM05D003380 ORTHO05D004232 2.0e-09 65.1 38 84.2
CSS0000176 Camellia sinensis var. sinensis HOM05D003380 ORTHO05D004232 2.6e-09 64.7 31 100.0
CANSAT25G3289 Cannabis sativa HOM05D003380 ORTHO05D004232 2.6e-09 64.7 34 91.2
MD13G1234400 Malus domestica HOM05D003380 ORTHO05D004232 2.6e-09 64.7 31 100.0
MD16G1239000 Malus domestica HOM05D003380 ORTHO05D004232 2.6e-09 64.7 31 100.0
Prupe.1G065200 Prunus persica HOM05D003380 ORTHO05D004232 2.6e-09 64.7 31 100.0
Prupe.1G456200 Prunus persica HOM05D003380 ORTHO05D004232 2.6e-09 64.7 31 100.0
Rhsim01G0218400 Rhododendron simsii HOM05D003380 ORTHO05D004232 2.6e-09 64.7 38 84.2
Sc06g0001250 Simmondsia chinensis HOM05D003380 ORTHO05D004232 2.6e-09 64.7 38 81.6
Lalb_Chr08g0243471 Lupinus albus HOM05D003380 ORTHO05D004232 3.4e-09 64.3 38 86.8
Oeu021030.1 Olea europaea HOM05D003380 ORTHO05D004232 3.4e-09 64.3 38 81.6
TAR383G0138 Trochodendron aralioides HOM05D003380 ORTHO05D004232 3.4e-09 64.3 38 89.5
MSTRG.10467 Avicennia marina HOM05D003380 ORTHO05D004232 4.4e-09 63.9 38 81.6
MSTRG.19395 Avicennia marina HOM05D003380 ORTHO05D004232 4.4e-09 63.9 38 81.6
Lalb_Chr23g0269261 Lupinus albus HOM05D003380 ORTHO05D004232 4.4e-09 63.9 38 86.8
Psat5g024560 Pisum sativum HOM05D003380 ORTHO05D004232 4.4e-09 63.9 36 83.3
Solyc07g016200.3 Solanum lycopersicum HOM05D003380 ORTHO05D004232 4.4e-09 63.9 38 81.6
Sopen07g005910 Solanum pennellii HOM05D003380 ORTHO05D004232 4.4e-09 63.9 38 81.6
PGSC0003DMG400009772 Solanum tuberosum HOM05D003380 ORTHO05D004232 4.4e-09 63.9 38 81.6
PGSC0003DMG400020027 Solanum tuberosum HOM05D003380 ORTHO05D004232 4.4e-09 63.9 38 81.6
TPR.G12492 Trifolium pratense HOM05D003380 ORTHO05D004232 4.4e-09 63.9 36 83.3
Cfa013309 Carpinus fangiana HOM05D003380 ORTHO05D004232 5.8e-09 63.5 38 86.8
Haze_21791 Corylus avellana HOM05D003380 ORTHO05D004232 5.8e-09 63.5 38 86.8
Migut.L01915 Erythranthe guttata HOM05D003380 ORTHO05D004232 5.8e-09 63.5 38 81.6
FvH4_2g36480 Fragaria vesca HOM05D003380 ORTHO05D004232 5.8e-09 63.5 36 83.3
FvH4_7g10810 Fragaria vesca HOM05D003380 ORTHO05D004232 5.8e-09 63.5 32 93.8
FAN06G1260 Fragaria x ananassa HOM05D003380 ORTHO05D004232 5.8e-09 63.5 32 93.8
FAN06G5002 Fragaria x ananassa HOM05D003380 ORTHO05D004232 5.8e-09 63.5 32 93.8
FAN20G0682 Fragaria x ananassa HOM05D003380 ORTHO05D004232 5.8e-09 63.5 36 83.3
Gohir.A05G066200 Gossypium hirsutum HOM05D003380 ORTHO05D004232 5.8e-09 63.5 38 86.8
Nn3g19887 Nelumbo nucifera HOM05D003380 ORTHO05D004232 5.8e-09 63.5 38 86.8
PSO170G5091 Papaver somniferum HOM05D003380 ORTHO05D004232 5.8e-09 63.5 38 86.8
PSO210G2204 Papaver somniferum HOM05D003380 ORTHO05D004232 5.8e-09 63.5 38 86.8
Rhsim03G0268700 Rhododendron simsii HOM05D003380 ORTHO05D004232 5.8e-09 63.5 38 81.6
RhsimUnG0051400 Rhododendron simsii HOM05D003380 ORTHO05D004232 5.8e-09 63.5 38 81.6
RcHm_v2.0_Chr6g0305401 Rosa chinensis HOM05D003380 ORTHO05D004232 5.8e-09 63.5 36 83.3
Hund19388 Selenicereus undatus HOM05D003380 ORTHO05D004232 5.8e-09 63.5 33 93.9
THA.LOC104819924 Tarenaya hassleriana HOM05D003380 ORTHO05D004232 5.8e-09 63.5 38 86.8
GSVIVG01032253001 Vitis vinifera HOM05D003380 ORTHO05D004232 5.8e-09 63.5 32 93.8
Actinidia38523 Actinidia chinensis HOM05D003380 ORTHO05D004232 7.5e-09 63.2 38 78.9
Ca_15639_v3 Cicer arietinum L. HOM05D003380 ORTHO05D004232 7.5e-09 63.2 30 100.0
DCAR_004564 Daucus carota HOM05D003380 ORTHO05D004232 7.5e-09 63.2 36 83.3
Dinv37493 Davidia involucrata HOM05D003380 ORTHO05D004232 7.5e-09 63.2 33 93.9
Duzib168G0804 Durio zibethinus HOM05D003380 ORTHO05D004232 7.5e-09 63.2 38 84.2
HanXRQChr03g0081271 Helianthus annuus HOM05D003380 ORTHO05D004232 7.5e-09 63.2 31 93.5
Lsat_1_v5_gn_5_56460 Lactuca sativa HOM05D003380 ORTHO05D004232 7.5e-09 63.2 31 93.5
MBI13_g34299_MAGBIO Magnolia biondii HOM05D003380 ORTHO05D004232 7.5e-09 63.2 48 72.9
Nn1g03129 Nelumbo nucifera HOM05D003380 ORTHO05D004232 7.5e-09 63.2 38 84.2
Nitab4.5_0000899g0140 Nicotiana tabacum HOM05D003380 ORTHO05D004232 7.5e-09 63.2 38 81.6
Nitab4.5_0001535g0020 Nicotiana tabacum HOM05D003380 ORTHO05D004232 7.5e-09 63.2 38 81.6
Phvul.009G103400 Phaseolus vulgaris HOM05D003380 ORTHO05D004232 7.5e-09 63.2 34 88.2
Cc00_g00190 Coffea canephora HOM05D003380 ORTHO05D004232 9.8e-09 62.8 38 84.2
Eucgr.C02133 Eucalyptus grandis HOM05D003380 ORTHO05D004232 9.8e-09 62.8 31 96.8
FAN15G0754 Fragaria x ananassa HOM05D003380 ORTHO05D004232 9.8e-09 62.8 36 80.6
Glyma.04G077400 Glycine max HOM05D003380 ORTHO05D004232 9.8e-09 62.8 34 88.2
Glyma.06G078500 Glycine max HOM05D003380 ORTHO05D004232 9.8e-09 62.8 34 88.2
Lj1g0002632 Lotus japonicus HOM05D003380 ORTHO05D004232 9.8e-09 62.8 31 96.8
MD08G1124600 Malus domestica HOM05D003380 ORTHO05D004232 9.8e-09 62.8 31 96.8
SalBow6G4635 Salvia bowleyana HOM05D003380 ORTHO05D004232 9.8e-09 62.8 31 96.8
Sed0022704 Sechium edule HOM05D003380 ORTHO05D004232 9.8e-09 62.8 31 96.8
unitig_578.g16397 Utricularia gibba HOM05D003380 ORTHO05D004232 9.8e-09 62.8 38 81.6
Aqoxy7G02672 Aquilegia oxysepala HOM05D003380 ORTHO05D004232 1.3e-08 62.4 36 80.6
Manes.03G001100 Manihot esculenta HOM05D003380 ORTHO05D004232 1.3e-08 62.4 31 96.8
Potri.006G077900 Populus trichocarpa HOM05D003380 ORTHO05D004232 1.3e-08 62.4 31 93.5
Potri.018G145900 Populus trichocarpa HOM05D003380 ORTHO05D004232 1.3e-08 62.4 31 93.5
Sabra06G0058900 Salix brachista HOM05D003380 ORTHO05D004232 1.3e-08 62.4 31 93.5
Sabra18G0120300 Salix brachista HOM05D003380 ORTHO05D004232 1.3e-08 62.4 31 93.5
Sabra18G0127800 Salix brachista HOM05D003380 ORTHO05D004232 1.3e-08 62.4 31 93.5
SEGI_36081 Sequoiadendron giganteum HOM05D003380 ORTHO05D004232 1.7e-08 62.0 38 81.6
TWI63G0177 Tripterygium wilfordii HOM05D003380 ORTHO05D004232 1.7e-08 62.0 38 81.6
FAN03G3318 Fragaria x ananassa HOM05D003380 ORTHO05D004232 2.9e-08 61.2 32 90.6
HanXRQChr03g0067311 Helianthus annuus HOM05D003380 ORTHO05D004232 2.9e-08 61.2 31 90.3
EL10Ac2g03687 Beta vulgaris HOM05D003380 ORTHO05D004232 3.7e-08 60.8 35 82.9
CAN.G106.10 Capsicum annuum HOM05D003380 ORTHO05D004232 3.7e-08 60.8 38 76.3
Peaxi162Scf00320g00122 Petunia axillaris HOM05D003380 ORTHO05D004232 3.7e-08 60.8 38 78.9
MD15G1103300 Malus domestica HOM05D003380 ORTHO05D004232 4.9e-08 60.5 31 93.5
TWI34G1105 Tripterygium wilfordii HOM05D003380 ORTHO05D004232 4.9e-08 60.5 31 90.3
ATR0626G170 Amborella trichopoda HOM05D003380 ORTHO05D004232 6.4e-08 60.1 38 84.2
AUR62020647 Chenopodium quinoa HOM05D003380 ORTHO05D004232 6.4e-08 60.1 36 80.6
PGR044G1928 Punica granatum HOM05D003380 ORTHO05D004232 6.4e-08 60.1 33 90.9
CAN.G228.7 Capsicum annuum HOM05D003380 ORTHO05D004232 8.3e-08 59.7 33 87.9
Nitab4.5_0000404g0220 Nicotiana tabacum HOM05D003380 ORTHO05D004232 8.3e-08 59.7 31 90.3
Nitab4.5_0007423g0010 Nicotiana tabacum HOM05D003380 ORTHO05D004232 8.3e-08 59.7 31 90.3
Sopen05g027780 Solanum pennellii HOM05D003380 ORTHO05D004232 8.3e-08 59.7 31 90.3
CDE04G3274 Ceratophyllum demersum HOM05D003380 ORTHO05D004232 1.1e-07 59.3 31 87.1
Phvul.009G101000 Phaseolus vulgaris HOM05D006939 ORTHO05D008616 1.1e-07 59.3 34 79.4
Hund03262 Selenicereus undatus HOM05D003380 ORTHO05D004232 1.1e-07 59.3 33 87.9
PGSC0003DMG400013685 Solanum tuberosum HOM05D003380 ORTHO05D004232 1.1e-07 59.3 31 90.3
HPP92_004718 Vanilla planifolia HOM05D003380 ORTHO05D004232 1.1e-07 59.3 38 81.6
AUR62038728 Chenopodium quinoa HOM05D003380 ORTHO05D004232 1.4e-07 58.9 36 77.8
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 2.4e-07 58.2 31 87.1
ECA240G0102 Erigeron canadensis HOM05D003380 ORTHO05D004232 2.4e-07 58.2 31 87.1
vmacro15777 Vaccinium macrocarpon HOM05D003380 ORTHO05D004232 2.4e-07 58.2 30 90.0
VMungo1309G0072 Vigna mungo HOM05D003380 ORTHO05D004232 3.2e-07 57.8 34 82.4
Ah.09g234230 Amaranthus hybridus HOM05D003380 ORTHO05D004232 7.0e-07 56.6 30 86.7
Pp3c18_17380 Physcomitrium patens HOM05D003380 ORTHO05D004232 3.5e-06 54.3 32 75.0


User provided reference genes

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