Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.7e-84 315.8 152 100.0
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 9.6e-67 256.9 140 85.0
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 6.3e-66 254.2 140 84.3
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 2.6e-64 248.8 137 81.8
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 2.7e-61 238.8 140 80.0
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 6.1e-61 237.7 140 75.0
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 1.3e-60 236.5 133 78.2
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 3.9e-60 235.0 133 76.7
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 3.9e-60 235.0 133 76.7
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 3.9e-60 235.0 133 76.7
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 1.5e-59 233.0 133 79.7
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 2.5e-59 232.3 133 76.7
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 2.5e-59 232.3 133 75.9
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 3.3e-59 231.9 135 77.0
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 3.3e-59 231.9 137 75.9
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 4.3e-59 231.5 133 78.9
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 4.3e-59 231.5 133 78.9
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 5.7e-59 231.1 133 75.9
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 5.7e-59 231.1 133 77.4
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 7.4e-59 230.7 135 75.6
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 1.3e-58 229.9 133 75.2
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 1.3e-58 229.9 133 74.4
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 1.3e-58 229.9 138 74.6
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 1.6e-58 229.6 140 73.6
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 2.2e-58 229.2 132 77.3
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 2.8e-58 228.8 135 77.0
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 3.7e-58 228.4 133 73.7
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 4.8e-58 228.0 133 75.2
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 1.4e-57 226.5 133 77.4
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.8e-57 226.1 134 73.9
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 1.8e-57 226.1 133 72.2
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 2.4e-57 225.7 149 69.1
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 4.1e-57 224.9 140 71.4
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 4.1e-57 224.9 133 75.2
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 6.9e-57 224.2 132 75.0
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 1.2e-56 223.4 134 74.6
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 1.5e-56 223.0 134 73.1
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 4.5e-56 221.5 135 73.3
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 4.5e-56 221.5 145 73.1
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 5.9e-56 221.1 152 69.7
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 7.7e-56 220.7 133 75.2
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 1.7e-55 219.5 134 73.1
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 2.2e-55 219.2 143 67.8
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 3.8e-55 218.4 140 69.3
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 6.5e-55 217.6 140 69.3
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 6.5e-55 217.6 136 72.8
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 1.1e-54 216.9 136 72.1
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 1.4e-54 216.5 134 72.4
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.4e-54 216.5 134 72.4
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 1.4e-54 216.5 142 69.0
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 1.9e-54 216.1 133 72.2
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 2.5e-54 215.7 134 70.9
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 3.2e-54 215.3 134 72.4
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 4.2e-54 214.9 131 74.8
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 4.2e-54 214.9 131 74.8
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 5.5e-54 214.5 134 71.6
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 7.2e-54 214.2 134 68.7
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 9.4e-54 213.8 134 70.1
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 9.4e-54 213.8 139 68.3
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 9.4e-54 213.8 139 68.3
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.2e-53 213.4 131 74.0
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 2.1e-53 212.6 134 68.7
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.7e-53 212.2 134 70.1
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.7e-53 212.2 139 67.6
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 6.1e-53 211.1 134 67.9
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 1.8e-52 209.5 134 68.7
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 2.3e-52 209.1 134 70.9
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 1.1e-51 206.8 160 61.9
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 2.0e-51 206.1 134 67.9
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 3.3e-51 205.3 149 67.8
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 4.4e-51 204.9 139 66.9
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 5.7e-51 204.5 134 66.4
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 7.4e-51 204.1 133 66.9
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 9.7e-51 203.8 115 77.4
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 1.3e-50 203.4 135 68.9
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 1.3e-50 203.4 122 73.8
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 1.3e-50 203.4 133 66.2
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 1.7e-50 203.0 140 65.7
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 3.7e-50 201.8 134 63.4
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 3.7e-50 201.8 128 69.5
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 4.8e-50 201.4 133 66.2
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 8.2e-50 200.7 134 70.9
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 1.8e-49 199.5 197 53.8
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 2.4e-49 199.1 133 65.4
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 3.1e-49 198.7 140 67.1
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 5.3e-49 198.0 146 64.4
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 5.3e-49 198.0 134 65.7
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 9.1e-49 197.2 140 63.6
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 9.1e-49 197.2 140 66.4
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 1.2e-48 196.8 140 63.6
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.2e-48 196.8 137 60.6
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.2e-48 196.8 133 66.2
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.0e-48 196.1 138 65.2
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 2.6e-48 195.7 134 67.9
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 2.6e-48 195.7 116 73.3
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 5.9e-48 194.5 134 64.2
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.0e-47 193.7 137 59.9
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 1.7e-47 193.0 134 67.2
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 3.8e-47 191.8 134 61.2
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 5.0e-47 191.4 116 74.1
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 1.1e-46 190.3 130 65.4
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.4e-46 189.9 129 64.3
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 1.9e-46 189.5 134 64.9
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 1.9e-46 189.5 134 64.9
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 2.5e-46 189.1 133 64.7
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 3.2e-46 188.7 137 60.6
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 5.5e-46 188.0 134 64.9
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 7.2e-46 187.6 132 67.4
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 9.4e-46 187.2 133 63.9
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 2.7e-45 185.7 132 65.2
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 4.7e-45 184.9 115 73.0
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 4.7e-45 184.9 140 59.3
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 1.0e-44 183.7 140 55.7
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 1.4e-44 183.3 139 57.6
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 1.8e-44 183.0 136 61.0
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 2.3e-44 182.6 115 71.3
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 2.3e-44 182.6 140 60.7
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 6.7e-44 181.0 133 60.2
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 2.0e-43 179.5 139 57.6
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 1.7e-42 176.4 140 54.3
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 2.2e-42 176.0 134 57.5
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 4.8e-42 174.9 139 58.3
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 2.4e-41 172.6 122 63.9
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.4e-41 172.6 138 57.2
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 7.0e-41 171.0 118 65.3
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 1.2e-40 170.2 118 64.4
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 1.6e-40 169.9 127 60.6
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 2.6e-40 169.1 134 57.5
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 1.3e-39 166.8 119 62.2
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 8.5e-39 164.1 138 55.8
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.1e-38 163.7 111 65.8
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 5.5e-38 161.4 94 75.5
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 8.0e-37 157.5 140 55.0
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 8.0e-37 157.5 128 56.2
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.1e-33 145.6 124 54.0
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.1e-33 145.6 124 54.0
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.2e-31 139.4 133 48.1
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 4.7e-29 131.7 133 45.1
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 8.8e-28 127.5 127 47.2
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 7.5e-27 124.4 133 45.1
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 2.2e-26 122.9 99 55.6
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 2.8e-26 122.5 79 68.4
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 4.8e-26 121.7 134 48.5
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 1.8e-25 119.8 99 55.6
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 7.7e-24 114.4 136 40.4
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 2.9e-23 112.5 134 40.3
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 6.5e-23 111.3 83 57.8
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 8.5e-23 110.9 136 37.5
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 1.1e-22 110.5 128 40.6
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.8e-20 103.2 130 38.5
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 5.7e-19 98.2 100 40.0
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 4.5e-16 88.6 55 70.9
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 5.9e-16 88.2 96 46.9
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 7.8e-16 87.8 87 49.4
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 3.8e-15 85.5 112 40.2
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 5.0e-15 85.1 50 76.0
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 5.0e-15 85.1 50 76.0
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 5.0e-15 85.1 50 76.0
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 5.0e-15 85.1 123 37.4
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 6.6e-15 84.7 59 62.7
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 1.5e-14 83.6 50 74.0
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 4.4e-11 72.0 88 36.4
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 1.3e-10 70.5 116 37.1
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 1.6e-08 63.5 32 81.2
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 1.6e-08 63.5 49 55.1


User provided reference genes

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