Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G049400 Carya illinoinensis HOM05D005252 ORTHO05D006788 2.1e-241 838.6 415 100.0
Haze_14323 Corylus avellana HOM05D005252 ORTHO05D006788 8.8e-179 630.6 397 79.3
Cfa007750 Carpinus fangiana HOM05D005252 ORTHO05D006788 1.3e-177 626.7 397 78.3
QL02p064187 Quercus lobata HOM05D005252 ORTHO05D006788 8.5e-174 614.0 396 76.0
Potri.004G081400 Populus trichocarpa HOM05D005252 ORTHO05D006788 9.4e-149 530.8 396 66.9
Hma1.2p1_0158F.1_g069575 Hydrangea macrophylla HOM05D005252 ORTHO05D006788 8.8e-147 524.2 395 65.3
Hma1.2p1_0158F.1_g069580 Hydrangea macrophylla HOM05D005252 ORTHO05D006788 8.8e-147 524.2 395 65.3
Cpa.g.sc178.38 Carica papaya HOM05D005252 ORTHO05D006788 9.8e-146 520.8 397 64.2
Glyma.14G209800 Glycine max HOM05D005252 ORTHO05D006788 6.3e-145 518.1 395 63.5
CSS0014125 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 8.3e-145 517.7 402 64.7
CSS0009455 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 4.1e-144 515.4 402 64.4
LjContig00141g0010829 Lotus japonicus HOM05D005252 ORTHO05D006788 5.0e-142 508.4 408 63.5
RcHm_v2.0_Chr3g0488621 Rosa chinensis HOM05D005252 ORTHO05D006788 5.0e-142 508.4 391 65.0
Atru.chr1.2124 Acer truncatum HOM05D005252 ORTHO05D006788 9.5e-141 504.2 396 64.6
VMungo0647G0073 Vigna mungo HOM05D005252 ORTHO05D006788 1.2e-140 503.8 394 62.9
Actinidia28776 Actinidia chinensis HOM05D005252 ORTHO05D006788 3.6e-140 502.3 400 63.5
TPR.G5289 Trifolium pratense HOM05D005252 ORTHO05D006788 3.6e-140 502.3 398 62.1
TAR622G0726 Trochodendron aralioides HOM05D005252 ORTHO05D006788 3.6e-140 502.3 396 63.1
Ca_05755_v3 Cicer arietinum L. HOM05D005252 ORTHO05D006788 6.1e-140 501.5 397 62.7
arahy.Tifrunner.gnm1.ann1.Y82BEI Arachis hypogaea HOM05D005252 ORTHO05D006788 3.0e-139 499.2 395 61.3
Prupe.3G014000 Prunus persica HOM05D005252 ORTHO05D006788 8.9e-139 497.7 395 64.3
Phvul.008G241400 Phaseolus vulgaris HOM05D005252 ORTHO05D006788 1.2e-138 497.3 394 61.9
Lalb_Chr04g0251511 Lupinus albus HOM05D005252 ORTHO05D006788 2.0e-138 496.5 394 61.7
Medtr5g076640 Medicago truncatula HOM05D005252 ORTHO05D006788 2.6e-138 496.1 396 62.4
arahy.Tifrunner.gnm1.ann1.UX6KKC Arachis hypogaea HOM05D005252 ORTHO05D006788 4.4e-138 495.4 395 60.5
FvH4_1g27420 Fragaria vesca HOM05D005252 ORTHO05D006788 4.4e-138 495.4 398 62.8
Ciclev10011537m.g Citrus clementina HOM05D005252 ORTHO05D006788 1.7e-137 493.4 398 62.8
MD17G1287300 Malus domestica HOM05D005252 ORTHO05D006788 2.0e-135 486.5 395 62.8
Dinv19082 Davidia involucrata HOM05D000783 ORTHO05D000705 3.0e-134 482.6 377 65.5
Sabra04G0054100 Salix brachista HOM05D005252 ORTHO05D006788 3.9e-134 482.3 383 63.7
TWI74G0077 Tripterygium wilfordii HOM05D005252 ORTHO05D006788 1.5e-133 480.3 395 62.8
Psat2g042800 Pisum sativum HOM05D005252 ORTHO05D006788 5.6e-133 478.4 396 59.6
CANSAT56G0277 Cannabis sativa HOM05D005252 ORTHO05D006788 1.4e-131 473.8 398 59.3
FAN28G2815 Fragaria x ananassa HOM05D005252 ORTHO05D006788 1.8e-131 473.4 393 61.3
Sed0007469 Sechium edule HOM05D005252 ORTHO05D006788 1.2e-130 470.7 398 61.1
ClCG05G011370 Citrullus lanatus HOM05D005252 ORTHO05D006788 1.7e-129 466.8 400 60.5
Lj2C511T2 Lonicera japonica HOM05D005252 ORTHO05D006788 3.7e-129 465.7 395 58.7
PGR004G2027 Punica granatum HOM05D005252 ORTHO05D006788 1.9e-128 463.4 392 60.7
PSO063G5026 Papaver somniferum HOM05D005252 ORTHO05D006788 3.2e-128 462.6 392 59.2
CsaV3_3G021090 Cucumis sativus L. HOM05D005252 ORTHO05D006788 9.2e-128 461.1 398 59.8
PSO782G3987 Papaver somniferum HOM05D005252 ORTHO05D006788 9.2e-128 461.1 392 59.7
Duzib133G0566 Durio zibethinus HOM05D005252 ORTHO05D006788 1.2e-127 460.7 396 60.4
Cc07_g12720 Coffea canephora HOM05D005252 ORTHO05D006788 2.7e-127 459.5 385 60.5
MBI06_g19632_MAGBIO Magnolia biondii HOM05D005252 ORTHO05D006788 6.0e-127 458.4 396 59.6
FAN28G2525 Fragaria x ananassa HOM05D005252 ORTHO05D006788 7.8e-127 458.0 385 60.8
FAN19G2162 Fragaria x ananassa HOM05D005252 ORTHO05D006788 1.7e-126 456.8 369 62.6
arahy.Tifrunner.gnm1.ann1.2Q625H Arachis hypogaea HOM05D005252 ORTHO05D006788 2.5e-125 453.0 366 60.4
COL.COLO4_20051 Corchorus olitorius HOM05D005252 ORTHO05D006788 4.3e-125 452.2 400 58.8
THA.LOC104820865 Tarenaya hassleriana HOM05D005252 ORTHO05D006788 9.5e-125 451.1 403 57.1
DCAR_003403 Daucus carota HOM05D005252 ORTHO05D006788 3.6e-124 449.1 396 56.6
GSVIVG01035253001 Vitis vinifera HOM05D005252 ORTHO05D006788 4.7e-124 448.7 396 58.3
Nn5g27060 Nelumbo nucifera HOM05D005252 ORTHO05D006788 6.2e-124 448.4 404 56.7
Manes.01G124000 Manihot esculenta HOM05D005252 ORTHO05D006788 2.6e-122 443.0 376 60.6
Aqoxy3G04163 Aquilegia oxysepala HOM05D005252 ORTHO05D006788 7.5e-122 441.4 397 57.7
CARHR195970 Cardamine hirsuta HOM05D005252 ORTHO05D006788 9.8e-122 441.0 401 57.1
Sp6g26990 Schrenkiella parvula HOM05D005252 ORTHO05D006788 9.8e-122 441.0 408 56.4
A02p04080 Brassica napus HOM05D005252 ORTHO05D006788 2.2e-121 439.9 398 56.3
BcaC03g18544 Brassica carinata HOM05D005252 ORTHO05D006788 6.4e-121 438.3 398 55.8
BraA02t05370Z Brassica rapa HOM05D005252 ORTHO05D006788 6.4e-121 438.3 398 56.0
AL6G28290 Arabidopsis lyrata HOM05D005252 ORTHO05D006788 1.6e-119 433.7 401 55.4
Nitab4.5_0000483g0240 Nicotiana tabacum HOM05D005252 ORTHO05D006788 3.5e-119 432.6 399 55.4
Gorai.008G054300 Gossypium raimondii HOM05D005252 ORTHO05D006788 1.7e-118 430.3 400 55.8
Gohir.D12G051000 Gossypium hirsutum HOM05D005252 ORTHO05D006788 2.3e-118 429.9 400 55.8
Gohir.A12G052400 Gossypium hirsutum HOM05D005252 ORTHO05D006788 3.0e-118 429.5 398 55.0
AT5G17240 Arabidopsis thaliana HOM05D005252 ORTHO05D006788 5.1e-118 428.7 399 55.1
BolC2t06801H Brassica oleracea HOM05D005252 ORTHO05D006788 5.1e-118 428.7 398 55.0
Eucgr.F02912 Eucalyptus grandis HOM05D005252 ORTHO05D006788 5.1e-118 428.7 378 58.5
Thhalv10015946m.g Eutrema salsugineum HOM05D005252 ORTHO05D006788 5.1e-118 428.7 406 54.4
CAN.G1681.16 Capsicum annuum HOM05D005252 ORTHO05D006788 6.6e-118 428.3 395 55.4
C02p08920 Brassica napus HOM05D005252 ORTHO05D006788 1.9e-117 426.8 399 54.9
Nitab4.5_0008137g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 5.6e-117 425.2 390 56.4
BcaNung00410 Brassica carinata HOM05D005252 ORTHO05D006788 7.3e-117 424.9 398 55.0
AUR62037491 Chenopodium quinoa HOM05D005252 ORTHO05D006788 2.8e-116 422.9 400 54.0
Aa31LG11G12430 Aethionema arabicum HOM05D005252 ORTHO05D006788 6.2e-116 421.8 398 54.8
EL10Ac4g08917 Beta vulgaris HOM05D005252 ORTHO05D006788 6.2e-116 421.8 404 54.5
Lsat_1_v5_gn_2_71861 Lactuca sativa HOM05D005252 ORTHO05D006788 6.2e-116 421.8 396 52.3
HanXRQChr14g0443361 Helianthus annuus HOM05D005252 ORTHO05D006788 8.1e-116 421.4 396 53.0
Ah.06g191550 Amaranthus hybridus HOM05D005252 ORTHO05D006788 1.1e-115 421.0 396 55.6
SalBow5G4267 Salvia bowleyana HOM05D005252 ORTHO05D006788 1.8e-115 420.2 396 53.0
Rhsim08G0021900 Rhododendron simsii HOM05D005252 ORTHO05D006788 2.6e-114 416.4 318 64.8
SGA_v2.0_scaffold115G32046 Striga asiatica HOM05D005252 ORTHO05D006788 3.4e-114 416.0 397 54.4
FAN23G1936 Fragaria x ananassa HOM05D005252 ORTHO05D006788 9.9e-114 414.5 388 57.5
SalBow5G4252 Salvia bowleyana HOM05D005252 ORTHO05D006788 2.4e-112 409.8 396 52.0
Solyc02g081320.4 Solanum lycopersicum HOM05D005252 ORTHO05D006788 2.4e-112 409.8 392 55.4
Sopen02g025950 Solanum pennellii HOM05D005252 ORTHO05D006788 9.2e-112 407.9 392 54.8
Peaxi162Scf00713g00214 Petunia axillaris HOM05D005252 ORTHO05D006788 1.6e-111 407.1 368 56.5
Nitab4.5_0011448g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 4.6e-111 405.6 390 53.8
vmacro18507 Vaccinium macrocarpon HOM05D005252 ORTHO05D006788 4.6e-111 405.6 397 54.4
PGSC0003DMG400016732 Solanum tuberosum HOM05D005252 ORTHO05D006788 1.3e-110 404.1 392 54.8
AUR62004761 Chenopodium quinoa HOM05D005252 ORTHO05D006788 3.0e-110 402.9 400 53.2
Sc20g0000830 Simmondsia chinensis HOM05D005252 ORTHO05D006788 1.1e-109 401.0 398 51.5
Thecc.04G057900 Theobroma cacao HOM05D005252 ORTHO05D006788 2.1e-108 396.7 352 58.2
ECA238G3559 Erigeron canadensis HOM05D005252 ORTHO05D006788 9.9e-106 387.9 378 52.1
arahy.Tifrunner.gnm1.ann1.P1K6DT Arachis hypogaea HOM05D005252 ORTHO05D006788 6.4e-105 385.2 326 58.6
Zm00001eb320090 Zea mays HOM05D005252 ORTHO05D006788 2.4e-104 383.3 397 51.4
CSS0013830 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 1.6e-100 370.5 393 52.2
Oeu060821.2 Olea europaea HOM05D005252 ORTHO05D006788 8.1e-100 368.2 363 52.3
HPP92_025609 Vanilla planifolia HOM05D005252 ORTHO05D006788 5.3e-99 365.5 375 52.3
Os07g0471100 Oryza sativa ssp. japonica HOM05D005252 ORTHO05D006788 2.9e-97 359.8 400 48.0
Hund22213 Selenicereus undatus HOM05D005252 ORTHO05D006788 1.9e-93 347.1 447 44.1
Migut.K00975 Erythranthe guttata HOM05D005252 ORTHO05D006788 2.0e-90 337.0 400 47.0
SEGI_32636 Sequoiadendron giganteum HOM05D005252 ORTHO05D006788 2.4e-88 330.1 457 42.2
SHI24494 Sapria himalayana HOM05D005252 ORTHO05D006788 3.5e-87 326.2 594 35.9
Carub.0006s1543 Capsella rubella HOM05D005252 ORTHO05D006788 9.6e-85 318.2 248 62.9
Glyma.02G240302 Glycine max HOM05D005252 ORTHO05D006788 4.6e-79 299.3 223 64.6
Pp3c1_22230 Physcomitrium patens HOM05D005252 ORTHO05D006788 1.9e-72 277.3 427 41.5
SMO244G0074 Selaginella moellendorffii HOM05D005252 ORTHO05D006788 6.3e-68 262.3 396 39.6
AagrBONN_evm.TU.Sc2ySwM_344.1683 Anthoceros agrestis HOM05D005252 ORTHO05D006788 1.2e-63 248.1 301 45.8
unitig_748.g8447 Utricularia gibba HOM05D001485 ORTHO05D001384 2.7e-63 246.9 377 40.6
CDE04G0719 Ceratophyllum demersum HOM05D005252 ORTHO05D006788 7.7e-58 228.8 223 54.3
ATR0807G108 Amborella trichopoda HOM05D005252 ORTHO05D006788 8.8e-54 215.3 191 57.6
Nitab4.5_0009456g0010 Nicotiana tabacum HOM05D005252 ORTHO05D006788 4.4e-53 213.0 190 58.9
Psat6g212680 Pisum sativum HOM05D005252 ORTHO05D006788 2.6e-45 187.2 159 56.6
CBR_g38413 Chara braunii HOM05D005252 ORTHO05D006788 2.4e-43 180.6 327 36.4
ATR0807G103 Amborella trichopoda HOM05D005252 ORTHO05D006788 5.2e-38 162.9 221 43.4
DCAR_003402 Daucus carota HOM05D005252 ORTHO05D006788 1.5e-37 161.4 147 56.5
Mapoly0060s0114 Marchantia polymorpha HOM05D005252 ORTHO05D006788 5.7e-37 159.5 254 39.8
AagrBONN_evm.TU.Sc2ySwM_344.1689 Anthoceros agrestis HOM05D005252 ORTHO05D006788 9.1e-35 152.1 162 50.0
CDE04G0131 Ceratophyllum demersum HOM05D005252 ORTHO05D006788 2.3e-33 147.5 110 60.0
CSS0049209 Camellia sinensis var. sinensis HOM05D005252 ORTHO05D006788 1.4e-30 138.3 106 64.2
MCO06G238 Micromonas commoda HOM05D005252 ORTHO05D006788 1.2e-29 135.2 231 36.8
PRCOL_00004140 Prasinoderma coloniale HOM05D005252 ORTHO05D006788 4.9e-28 129.8 430 27.0
Cre10.g437829 Chlamydomonas reinhardtii HOM05D005252 ORTHO05D006788 1.4e-27 128.3 470 25.5
TAR622G0830 Trochodendron aralioides HOM05D005252 ORTHO05D006788 2.7e-26 124.0 91 63.7
Gohir.A02G112713 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.1e-24 118.6 100 55.0
Gohir.A06G122900 Gossypium hirsutum HOM05D005252 ORTHO05D006788 1.5e-24 118.2 103 56.3
Gohir.A01G173232 Gossypium hirsutum HOM05D005252 ORTHO05D006788 5.6e-24 116.3 91 59.3
MELO3C020240.2 Cucumis melo HOM05D005252 ORTHO05D006788 1.2e-23 115.2 105 56.2
Gohir.A08G081162 Gossypium hirsutum HOM05D005252 ORTHO05D006788 2.8e-23 114.0 91 60.4
Gohir.A01G088400 Gossypium hirsutum HOM05D005252 ORTHO05D006788 6.1e-23 112.8 97 56.7
Gohir.A11G239440 Gossypium hirsutum HOM05D005252 ORTHO05D006788 2.3e-17 94.4 72 62.5
Mapoly0060s0113 Marchantia polymorpha HOM05D005252 ORTHO05D006788 5.6e-16 89.7 93 48.4
BcaC03g18542 Brassica carinata HOM05D005252 ORTHO05D032136 3.1e-14 84.0 58 67.2
Gohir.A13G083166 Gossypium hirsutum HOM05D005252 ORTHO05D006788 9.8e-13 79.0 63 61.9
SMO169G0173 Selaginella moellendorffii HOM05D007044 ORTHO05D008981 7.8e-10 69.3 232 28.0
Oeu024984.1 Olea europaea HOM05D005252 ORTHO05D006788 1.0e-09 68.9 50 62.0
Gohir.A07G145950 Gossypium hirsutum HOM05D005252 ORTHO05D006788 2.8e-07 60.8 49 59.2
C02p08900 Brassica napus HOM05D005252 ORTHO05D032136 1.1e-06 58.9 117 35.0
BolC2t06799H Brassica oleracea HOM05D005252 ORTHO05D032136 1.1e-06 58.9 117 35.0
AUR62038467 Chenopodium quinoa HOM05D005416 ORTHO05D007956 1.8e-06 58.2 365 24.4
Thecc.01G198200 Theobroma cacao HOM05D004224 ORTHO05D006437 2.3e-06 57.8 354 23.4
Pp3c24_9610 Physcomitrium patens HOM05D004224 ORTHO05D001113 5.2e-06 56.6 360 23.3
SMO356G0148 Selaginella moellendorffii HOM05D005416 ORTHO05D007956 5.2e-06 56.6 350 22.3


User provided reference genes

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