Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 6.3e-110 401.0 231 100.0
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 3.3e-95 352.1 229 84.3
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 3.5e-84 315.5 228 75.4
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 2.5e-82 309.3 222 84.2
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 8.0e-81 304.3 220 75.0
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 1.0e-80 303.9 220 75.0
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 2.7e-68 262.7 225 69.3
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 8.6e-67 257.7 227 66.1
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 5.6e-66 255.0 227 65.6
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 5.2e-64 248.4 222 63.1
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 6.8e-64 248.1 226 67.3
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 1.2e-63 247.3 225 65.8
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 3.4e-63 245.7 222 63.5
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 9.2e-61 237.7 210 65.7
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 2.1e-60 236.5 227 63.4
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 4.6e-60 235.3 225 64.0
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 3.0e-59 232.6 228 63.6
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 2.8e-57 226.1 257 57.6
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 4.7e-57 225.3 250 58.8
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 4.0e-56 222.2 211 62.6
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 2.6e-55 219.5 223 61.4
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.7e-54 216.9 222 58.1
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 2.1e-52 209.9 233 59.2
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 3.9e-51 205.7 242 57.0
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 2.5e-50 203.0 236 57.6
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 5.6e-50 201.8 236 56.8
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 2.1e-49 199.9 222 57.2
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.8e-49 199.5 227 57.3
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 8.1e-49 198.0 237 54.4
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 8.1e-49 198.0 218 58.7
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 1.1e-48 197.6 229 56.8
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 5.2e-48 195.3 225 55.6
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 8.9e-48 194.5 252 55.2
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 1.5e-47 193.7 237 54.9
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 3.4e-47 192.6 238 53.8
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 4.4e-47 192.2 236 54.7
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 8.4e-46 188.0 202 58.9
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.1e-45 187.6 227 55.5
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 1.9e-45 186.8 228 54.4
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 2.4e-45 186.4 236 53.8
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 5.4e-45 185.3 226 54.9
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 2.7e-44 183.0 220 54.1
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 7.8e-44 181.4 187 62.6
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 7.8e-44 181.4 237 52.7
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.3e-43 180.6 223 54.3
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 3.9e-43 179.1 231 51.9
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 4.3e-42 175.6 228 57.9
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 2.1e-41 173.3 226 54.0
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 3.6e-41 172.6 245 47.8
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 6.2e-41 171.8 206 55.3
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.1e-40 171.0 184 56.5
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.8e-40 170.2 184 57.1
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 3.1e-40 169.5 184 57.1
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 4.0e-40 169.1 226 52.2
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 9.9e-39 164.5 209 54.1
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 9.9e-39 164.5 221 57.0
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 9.9e-39 164.5 224 56.2
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 1.3e-38 164.1 182 55.5
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 2.9e-38 162.9 239 48.1
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.1e-37 161.0 181 59.1
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 1.9e-37 160.2 230 50.0
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.4e-37 159.8 209 50.7
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.4e-37 159.8 209 50.7
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 3.2e-37 159.5 183 59.6
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 9.3e-37 157.9 228 54.8
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 9.3e-37 157.9 228 54.8
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 1.2e-36 157.5 175 59.4
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 4.6e-36 155.6 236 46.6
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 3.0e-35 152.9 230 53.5
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 5.1e-35 152.1 230 48.3
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 6.6e-35 151.8 174 56.3
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 2.5e-34 149.8 222 48.2
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 3.3e-34 149.4 250 48.4
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 5.6e-34 148.7 208 47.6
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 7.3e-34 148.3 205 50.7
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 4.0e-32 142.5 238 49.6
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 7.6e-31 138.3 126 61.1
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.3e-30 137.5 227 51.5
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 1.7e-30 137.1 211 54.0
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 3.8e-30 136.0 181 57.5
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 6.4e-30 135.2 173 52.0
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 1.4e-29 134.0 239 41.8
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 7.1e-29 131.7 181 51.4
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 2.1e-28 130.2 238 42.9
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 3.5e-28 129.4 251 40.2
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 3.5e-28 129.4 251 40.2
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.6e-28 129.0 282 37.9
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 4.6e-28 129.0 243 40.7
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 1.0e-27 127.9 243 39.9
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 1.3e-27 127.5 251 39.8
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 3.9e-27 125.9 255 41.6
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 5.1e-27 125.6 234 41.0
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 8.7e-27 124.8 239 43.1
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 1.1e-26 124.4 172 50.6
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 1.9e-26 123.6 236 40.3
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 5.6e-26 122.1 271 36.9
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 5.6e-26 122.1 330 35.8
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 7.4e-26 121.7 194 45.4
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 1.6e-25 120.6 191 49.7
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 2.8e-25 119.8 246 45.9
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 1.8e-24 117.1 237 39.2
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 4.0e-24 115.9 122 60.7
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 9.0e-24 114.8 162 51.2
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 9.0e-24 114.8 252 38.5
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 2.6e-23 113.2 154 48.1
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 2.6e-23 113.2 189 50.3
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 2.6e-23 113.2 176 46.0
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 3.4e-23 112.8 242 38.8
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 2.9e-22 109.8 262 37.0
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 3.8e-22 109.4 180 43.3
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 8.4e-22 108.2 129 55.0
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 1.4e-21 107.5 259 37.8
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 2.5e-21 106.7 245 38.4
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 5.5e-21 105.5 241 37.3
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 7.1e-21 105.1 208 42.8
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 2.1e-20 103.6 253 35.6
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 3.5e-20 102.8 245 38.4
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 6.0e-20 102.1 259 35.9
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 1.8e-19 100.5 186 45.2
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 2.3e-19 100.1 120 56.7
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 3.9e-19 99.4 248 35.5
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 3.9e-19 99.4 229 39.3
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 8.7e-19 98.2 236 37.3
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 1.1e-18 97.8 248 35.5
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 3.3e-18 96.3 248 36.7
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 1.6e-17 94.0 236 37.3
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 1.6e-17 94.0 186 42.5
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 5.3e-16 89.0 260 31.9
Gohir.D11G325975 Gossypium hirsutum HOM05D004795 ORTHO05D005518 9.0e-16 88.2 101 52.5
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 2.0e-15 87.0 236 35.2
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 2.6e-15 86.7 197 38.6
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 7.6e-15 85.1 105 55.2
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 4.9e-14 82.4 104 51.0
Actinidia15890 Actinidia chinensis HOM05D004795 ORTHO05D005518 1.9e-13 80.5 188 38.8
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 2.5e-13 80.1 162 38.9
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 3.2e-13 79.7 160 40.0
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 7.1e-13 78.6 240 32.9
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 7.1e-13 78.6 109 47.7
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 1.6e-12 77.4 239 33.5
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 1.6e-12 77.4 172 38.4
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 2.7e-12 76.6 205 32.7
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 7.9e-12 75.1 156 36.5
CAN.G358.61 Capsicum annuum HOM05D004795 ORTHO05D005518 7.9e-12 75.1 95 54.7
ATR0752G028 Amborella trichopoda HOM05D004795 ORTHO05D005518 3.0e-11 73.2 173 38.2
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 4.3e-10 69.3 217 33.2
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 2.8e-09 66.6 172 36.0
SalBow7G1622 Salvia bowleyana HOM05D004795 ORTHO05D005518 1.4e-08 64.3 115 45.2
SalBow7G4115 Salvia bowleyana HOM05D004795 ORTHO05D005518 1.4e-08 64.3 115 45.2
SalBow5G0757 Salvia bowleyana HOM05D004795 ORTHO05D005518 5.3e-08 62.4 87 48.3
Gohir.A07G174000 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.2e-07 61.2 85 49.4
unitig_748.g8746 Utricularia gibba HOM05D004795 ORTHO05D005518 2.6e-07 60.1 118 39.0


User provided reference genes

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