Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G036900 Carya illinoinensis HOM05D006878 ORTHO05D008579 2.1e-123 445.7 222 100.0
Cfa007222 Carpinus fangiana HOM05D006878 ORTHO05D008579 5.9e-97 357.8 218 83.5
QL02p071231 Quercus lobata HOM05D006878 ORTHO05D008579 1.2e-94 350.1 244 72.1
GSVIVG01033083001 Vitis vinifera HOM05D006878 ORTHO05D008579 6.7e-93 344.4 217 79.7
Manes.15G161800 Manihot esculenta HOM05D006878 ORTHO05D008579 9.7e-92 340.5 221 77.4
Prupe.3G307100 Prunus persica HOM05D006878 ORTHO05D008579 1.7e-91 339.7 219 76.7
Thecc.04G038000 Theobroma cacao HOM05D006878 ORTHO05D008579 2.4e-90 335.9 220 75.9
Dinv33333 Davidia involucrata HOM05D006878 ORTHO05D008579 9.1e-90 334.0 212 78.3
Duzib147G1327 Durio zibethinus HOM05D006878 ORTHO05D008579 2.6e-89 332.4 220 75.0
MD09G1010100 Malus domestica HOM05D006878 ORTHO05D008579 2.6e-89 332.4 219 75.3
COL.COLO4_13265 Corchorus olitorius HOM05D006878 ORTHO05D008579 5.9e-89 331.3 220 74.1
Gohir.A07G228800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 6.5e-88 327.8 220 73.2
Gorai.001G271700 Gossypium raimondii HOM05D006878 ORTHO05D008579 6.5e-88 327.8 220 73.6
CANSAT64G0355 Cannabis sativa HOM05D006878 ORTHO05D008579 8.5e-88 327.4 220 73.2
Gohir.D07G235800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 1.1e-87 327.0 220 72.7
Sabra16G0210700 Salix brachista HOM05D006878 ORTHO05D008579 1.9e-87 326.2 220 74.1
Actinidia05902 Actinidia chinensis HOM05D006878 ORTHO05D008579 2.5e-87 325.9 218 73.4
MD17G1000600 Malus domestica HOM05D006878 ORTHO05D008579 3.2e-87 325.5 220 74.1
Potri.001G329300 Populus trichocarpa HOM05D006878 ORTHO05D008579 5.5e-87 324.7 221 71.5
Ciclev10016370m.g Citrus clementina HOM05D006878 ORTHO05D008579 1.6e-86 323.2 220 72.7
TWI34G0743 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 1.6e-86 323.2 222 73.4
CSS0001354 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 2.7e-86 322.4 218 72.9
ClCG11G007130 Citrullus lanatus HOM05D006878 ORTHO05D008579 3.6e-86 322.0 219 72.6
CSS0033487 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 6.1e-86 321.2 218 72.5
TWI34G1534 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 1.0e-85 320.5 222 73.0
Atru.chr6.2581 Acer truncatum HOM05D006878 ORTHO05D008579 3.0e-85 318.9 220 71.4
PGR142G3785 Punica granatum HOM05D006878 ORTHO05D008579 1.1e-84 317.0 221 70.1
CsaV3_2G034120 Cucumis sativus L. HOM05D006878 ORTHO05D008579 2.0e-84 316.2 216 71.8
MELO3C008189.2 Cucumis melo HOM05D006878 ORTHO05D008579 5.7e-84 314.7 216 71.3
Eucgr.I01641 Eucalyptus grandis HOM05D006878 ORTHO05D008579 5.7e-84 314.7 205 76.6
vmacro18351 Vaccinium macrocarpon HOM05D006878 ORTHO05D008579 5.7e-84 314.7 230 68.3
Lalb_Chr14g0363461 Lupinus albus HOM05D006878 ORTHO05D008579 2.8e-83 312.4 220 70.5
Rhsim08G0042400 Rhododendron simsii HOM05D006878 ORTHO05D008579 3.7e-83 312.0 222 70.3
RcHm_v2.0_Chr2g0175731 Rosa chinensis HOM05D006878 ORTHO05D008579 3.7e-83 312.0 204 77.0
Nn3g16452 Nelumbo nucifera HOM05D006878 ORTHO05D008579 4.8e-83 311.6 204 77.0
CAN.G473.102 Capsicum annuum HOM05D006878 ORTHO05D008579 1.1e-82 310.5 217 68.7
TAR629G1038 Trochodendron aralioides HOM05D006878 ORTHO05D008579 1.1e-82 310.5 211 73.5
TAR629G1805 Trochodendron aralioides HOM05D006878 ORTHO05D008579 1.1e-82 310.5 211 73.5
Sed0002550 Sechium edule HOM05D006878 ORTHO05D008579 1.4e-82 310.1 216 70.8
Glyma.16G056000 Glycine max HOM05D006878 ORTHO05D008579 5.3e-82 308.1 223 71.3
TAR371G0275 Trochodendron aralioides HOM05D006878 ORTHO05D008579 1.2e-81 307.0 216 71.3
Phvul.001G093000 Phaseolus vulgaris HOM05D006878 ORTHO05D008579 3.5e-81 305.4 223 70.0
VMungo1383G2452 Vigna mungo HOM05D006878 ORTHO05D008579 1.3e-80 303.5 221 69.7
FAN09G4559 Fragaria x ananassa HOM05D006878 ORTHO05D008579 2.9e-80 302.4 202 75.7
Oeu005107.2 Olea europaea HOM05D006878 ORTHO05D008579 5.0e-80 301.6 247 63.2
Psat3g178400 Pisum sativum HOM05D006878 ORTHO05D008579 6.5e-80 301.2 219 68.5
FvH4_6g53600 Fragaria vesca HOM05D006878 ORTHO05D008579 1.1e-79 300.4 202 74.8
FAN14G5463 Fragaria x ananassa HOM05D006878 ORTHO05D008579 1.1e-79 300.4 202 74.8
Nitab4.5_0002050g0060 Nicotiana tabacum HOM05D006878 ORTHO05D008579 1.1e-79 300.4 218 67.0
Nitab4.5_0009844g0010 Nicotiana tabacum HOM05D006878 ORTHO05D008579 1.5e-79 300.1 218 67.0
Peaxi162Scf00420g00554 Petunia axillaris HOM05D006878 ORTHO05D008579 1.5e-79 300.1 219 67.6
PGSC0003DMG400020210 Solanum tuberosum HOM05D006878 ORTHO05D008579 3.2e-79 298.9 217 67.3
DCAR_015107 Daucus carota HOM05D006878 ORTHO05D008579 9.4e-79 297.4 220 69.1
TPR.G38297 Trifolium pratense HOM05D006878 ORTHO05D008579 1.6e-78 296.6 221 68.8
Cc07_g00890 Coffea canephora HOM05D006878 ORTHO05D008579 2.1e-78 296.2 218 67.9
Aqoxy5G03335 Aquilegia oxysepala HOM05D006878 ORTHO05D008579 2.7e-78 295.8 214 71.0
AL6G24810 Arabidopsis lyrata HOM05D006878 ORTHO05D008579 8.0e-78 294.3 226 65.9
MSTRG.3257 Avicennia marina HOM05D006878 ORTHO05D008579 8.0e-78 294.3 217 68.2
Thhalv10014409m.g Eutrema salsugineum HOM05D006878 ORTHO05D008579 1.0e-77 293.9 226 67.7
Solyc02g094170.3 Solanum lycopersicum HOM05D006878 ORTHO05D008579 1.0e-77 293.9 217 65.9
Aa31LG11G14940 Aethionema arabicum HOM05D006878 ORTHO05D008579 2.3e-77 292.7 224 64.7
BcaB01g06341 Brassica carinata HOM05D006878 ORTHO05D008579 4.0e-77 292.0 226 66.8
Sopen02g038800 Solanum pennellii HOM05D006878 ORTHO05D008579 5.2e-77 291.6 217 65.4
arahy.Tifrunner.gnm1.ann1.1N9EHH Arachis hypogaea HOM05D006878 ORTHO05D008579 6.7e-77 291.2 221 65.6
arahy.Tifrunner.gnm1.ann1.G39TQA Arachis hypogaea HOM05D006878 ORTHO05D008579 6.7e-77 291.2 221 65.6
Sp6g29870 Schrenkiella parvula HOM05D006878 ORTHO05D008579 2.0e-76 289.7 226 65.9
SpUn0049_0070 Schrenkiella parvula HOM05D006878 ORTHO05D008579 2.0e-76 289.7 226 65.9
SGA_v2.0_scaffold47G17597 Striga asiatica HOM05D006878 ORTHO05D008579 7.5e-76 287.7 219 67.6
BcaB01g05305 Brassica carinata HOM05D006878 ORTHO05D008579 1.3e-75 287.0 224 66.1
A03p06460 Brassica napus HOM05D006878 ORTHO05D008579 1.3e-75 287.0 226 66.8
Carub.0006s1234 Capsella rubella HOM05D006878 ORTHO05D008579 1.3e-75 287.0 226 65.9
Sc03g0006490 Simmondsia chinensis HOM05D006878 ORTHO05D008579 1.7e-75 286.6 223 66.8
AT5G14140 Arabidopsis thaliana HOM05D006878 ORTHO05D008579 2.8e-75 285.8 224 64.7
HanXRQChr14g0450611 Helianthus annuus HOM05D006878 ORTHO05D008579 3.7e-75 285.4 228 66.7
SalBow7G1076 Salvia bowleyana HOM05D006878 ORTHO05D008579 4.8e-75 285.0 215 67.4
C03p07460 Brassica napus HOM05D006878 ORTHO05D008579 5.3e-74 281.6 218 67.0
BolC3t13247H Brassica oleracea HOM05D006878 ORTHO05D008579 5.3e-74 281.6 218 67.0
THA.LOC104821122 Tarenaya hassleriana HOM05D006878 ORTHO05D008579 7.0e-74 281.2 223 64.6
Migut.K01467 Erythranthe guttata HOM05D006878 ORTHO05D008579 9.1e-74 280.8 219 63.9
PSO478G0882 Papaver somniferum HOM05D006878 ORTHO05D008579 4.5e-73 278.5 178 75.3
Lsat_1_v5_gn_2_93161 Lactuca sativa HOM05D006878 ORTHO05D008579 2.2e-72 276.2 212 64.6
Lj1g0011001 Lotus japonicus HOM05D006878 ORTHO05D008579 2.9e-72 275.8 220 64.1
AUR62029405 Chenopodium quinoa HOM05D006878 ORTHO05D008579 5.0e-72 275.0 224 60.7
Ah.02g119990 Amaranthus hybridus HOM05D006878 ORTHO05D008579 6.5e-72 274.6 224 61.2
CARHR199200 Cardamine hirsuta HOM05D006878 ORTHO05D008579 3.2e-71 272.3 192 68.8
AUR62003439 Chenopodium quinoa HOM05D006878 ORTHO05D008579 5.5e-71 271.6 224 60.3
MBI07_g39449_MAGBIO Magnolia biondii HOM05D006878 ORTHO05D008579 9.4e-71 270.8 211 65.9
ATR0561G206 Amborella trichopoda HOM05D006878 ORTHO05D008579 1.2e-70 270.4 237 59.9
PSO017G0833 Papaver somniferum HOM05D006878 ORTHO05D008579 3.4e-68 262.3 239 60.3
Zm00001eb112900 Zea mays HOM05D006878 ORTHO05D008579 9.1e-66 254.2 204 62.3
ECA238G1054 Erigeron canadensis HOM05D006878 ORTHO05D008579 2.0e-65 253.1 248 56.5
SHI03949 Sapria himalayana HOM05D006878 ORTHO05D008579 1.3e-64 250.4 221 55.7
CDE05G3687 Ceratophyllum demersum HOM05D000160 ORTHO05D000496 9.5e-63 244.2 204 63.7
Os11g0498400 Oryza sativa ssp. japonica HOM05D006878 ORTHO05D008579 2.7e-62 242.7 182 63.7
Medtr7g029090 Medicago truncatula HOM05D006878 ORTHO05D008579 2.2e-59 233.0 157 73.2
EL10Ac6g15414 Beta vulgaris HOM05D006878 ORTHO05D008579 1.4e-58 230.3 223 56.5
Lalb_Chr22g0360351 Lupinus albus HOM05D006878 ORTHO05D008579 3.1e-58 229.2 144 77.1
Cpa.g.sc171.9 Carica papaya HOM05D006878 ORTHO05D008579 7.3e-55 218.0 131 75.6
Lju41C53T12 Lonicera japonica HOM05D006878 ORTHO05D008579 6.8e-53 211.5 204 57.4
SMO367G0946 Selaginella moellendorffii HOM05D006878 ORTHO05D008579 4.1e-50 202.2 203 51.2
Haze_14883 Corylus avellana HOM05D006878 ORTHO05D008579 2.7e-49 199.5 235 54.5
Pp3c4_16130 Physcomitrium patens HOM05D006878 ORTHO05D008579 2.7e-49 199.5 164 56.1
Mapoly0041s0098 Marchantia polymorpha HOM05D006878 ORTHO05D008579 3.0e-48 196.1 199 49.2
HPP92_022669 Vanilla planifolia HOM05D006878 ORTHO05D008579 3.6e-46 189.1 125 70.4
CBR_g26294 Chara braunii HOM05D006878 ORTHO05D008579 1.4e-42 177.2 182 47.3
Ca_22814_v3 Cicer arietinum L. HOM05D006878 ORTHO05D008579 9.8e-36 154.5 222 47.7
SEGI_11908 Sequoiadendron giganteum HOM05D006878 ORTHO05D008579 1.9e-34 150.2 146 53.4
Medtr7g029095 Medicago truncatula HOM05D006878 ORTHO05D008579 2.5e-31 139.8 220 39.1
FAN02G3703 Fragaria x ananassa HOM05D006878 ORTHO05D008579 5.8e-20 102.1 71 77.5
PRCOL_00001512 Prasinoderma coloniale HOM05D006878 ORTHO05D008579 9.9e-20 101.3 136 36.0
BraA03t09977Z Brassica rapa HOM05D006878 ORTHO05D008579 2.4e-18 96.7 96 58.3
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 5.6e-15 85.5 86 58.1
Actinidia36205 Actinidia chinensis HOM05D006878 ORTHO05D008579 2.9e-11 73.2 46 65.2
FAN23G0458 Fragaria x ananassa HOM05D006878 ORTHO05D008579 2.7e-09 66.6 38 86.8
CDE05G3052 Ceratophyllum demersum HOM05D006878 ORTHO05D008579 1.1e-07 61.2 90 45.6
FAN23G0356 Fragaria x ananassa HOM05D006878 ORTHO05D008579 2.1e-06 57.0 54 46.3


User provided reference genes

Program Settings