Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G032200 Carya illinoinensis HOM05D004896 ORTHO05D006447 7.7e-189 663.7 341 100.0
CiPaw.03G049000 Carya illinoinensis HOM05D004896 ORTHO05D006447 3.6e-146 521.9 328 82.6
Haze_14796 Corylus avellana HOM05D004896 ORTHO05D006447 1.2e-144 516.9 330 80.9
Cfa007299 Carpinus fangiana HOM05D004896 ORTHO05D006447 2.3e-140 502.7 330 78.8
QL02p073334 Quercus lobata HOM05D004896 ORTHO05D006447 2.2e-135 486.1 332 75.0
Manes.15G155100 Manihot esculenta HOM05D004896 ORTHO05D006447 7.1e-126 454.5 332 73.2
Gohir.A05G342400 Gossypium hirsutum HOM05D004896 ORTHO05D006447 9.2e-126 454.1 330 72.7
Gohir.D04G080440 Gossypium hirsutum HOM05D004896 ORTHO05D006447 2.7e-125 452.6 329 72.6
Gorai.012G091200 Gossypium raimondii HOM05D004896 ORTHO05D006447 3.5e-125 452.2 330 72.1
GSVIVG01003974001 Vitis vinifera HOM05D004896 ORTHO05D006447 1.3e-124 450.3 329 73.3
MD09G1019000 Malus domestica HOM05D004896 ORTHO05D006447 6.6e-124 448.0 332 72.6
Ciclev10015882m.g Citrus clementina HOM05D004896 ORTHO05D006447 1.6e-122 443.4 328 72.6
Prupe.3G298100 Prunus persica HOM05D004896 ORTHO05D006447 2.8e-122 442.6 331 72.2
RcHm_v2.0_Chr2g0173821 Rosa chinensis HOM05D004896 ORTHO05D006447 4.7e-122 441.8 332 70.5
CANSAT64G0177 Cannabis sativa HOM05D004896 ORTHO05D006447 1.4e-121 440.3 330 70.0
Thecc.04G026600 Theobroma cacao HOM05D004896 ORTHO05D006447 3.1e-121 439.1 328 70.4
Cpa.g.sc130.54 Carica papaya HOM05D004896 ORTHO05D006447 5.2e-121 438.3 331 69.8
FvH4_6g52290 Fragaria vesca HOM05D004896 ORTHO05D006447 5.2e-121 438.3 329 69.9
FAN14G4168 Fragaria x ananassa HOM05D004896 ORTHO05D006447 1.2e-120 437.2 329 69.6
VMungo1080G0372 Vigna mungo HOM05D004896 ORTHO05D006447 1.2e-120 437.2 308 74.0
Hma1.2p1_1484F.1_g286400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 1.5e-120 436.8 329 70.2
ClCG05G013000 Citrullus lanatus HOM05D004896 ORTHO05D006447 2.6e-120 436.0 338 70.4
Duzib264G0232 Durio zibethinus HOM05D004896 ORTHO05D006447 2.6e-120 436.0 332 70.2
TWI56G0223 Tripterygium wilfordii HOM05D004896 ORTHO05D006447 4.4e-120 435.3 332 69.9
Psat3g168560 Pisum sativum HOM05D004896 ORTHO05D006447 5.8e-120 434.9 328 67.7
FAN05G4015 Fragaria x ananassa HOM05D004896 ORTHO05D006447 9.9e-120 434.1 329 69.6
Ca_03861_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 1.3e-119 433.7 328 68.9
Hma1.2p1_1407F.1_g281400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 1.7e-119 433.3 328 70.4
Actinidia18427 Actinidia chinensis HOM05D004896 ORTHO05D006447 2.2e-119 433.0 333 69.4
FAN02G3298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 2.2e-119 433.0 329 69.6
COL.COLO4_29242 Corchorus olitorius HOM05D004896 ORTHO05D006447 6.4e-119 431.4 330 69.4
Phvul.008G145713 Phaseolus vulgaris HOM05D004896 ORTHO05D006447 1.9e-118 429.9 328 69.8
FAN09G1675 Fragaria x ananassa HOM05D004896 ORTHO05D006447 2.4e-118 429.5 329 68.4
Glyma.16G066000 Glycine max HOM05D004896 ORTHO05D006447 3.2e-118 429.1 330 69.1
Nn5g27187 Nelumbo nucifera HOM05D004896 ORTHO05D006447 1.2e-117 427.2 300 75.7
Potri.001G338200 Populus trichocarpa HOM05D004896 ORTHO05D006447 1.2e-117 427.2 333 69.4
Hma1.2p1_0383F.1_g140290 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 1.6e-117 426.8 314 71.3
CsaV3_3G027540 Cucumis sativus L. HOM05D004896 ORTHO05D006447 2.1e-117 426.4 330 68.8
Medtr0018s0290 Medicago truncatula HOM05D004896 ORTHO05D006447 1.0e-116 424.1 329 67.2
Sed0025595 Sechium edule HOM05D004896 ORTHO05D006447 1.7e-116 423.3 330 68.2
Lj7A604T65 Lonicera japonica HOM05D004896 ORTHO05D006447 3.0e-116 422.5 313 69.3
Lj1g0027814 Lotus japonicus HOM05D004896 ORTHO05D006447 6.6e-116 421.4 328 68.6
Eucgr.I01701 Eucalyptus grandis HOM05D004896 ORTHO05D006447 8.7e-116 421.0 259 80.7
Ca_01399_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 1.1e-115 420.6 328 66.8
Dinv33394 Davidia involucrata HOM05D004896 ORTHO05D006447 1.1e-115 420.6 330 69.4
Aqoxy1G02023 Aquilegia oxysepala HOM05D004896 ORTHO05D006447 2.5e-115 419.5 306 70.9
CSS0017957 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 2.5e-115 419.5 328 69.8
Solyc02g093690.3 Solanum lycopersicum HOM05D004896 ORTHO05D006447 5.6e-115 418.3 304 73.0
PGR142G1575 Punica granatum HOM05D004896 ORTHO05D006447 1.3e-114 417.2 333 67.6
SGA_v2.0_scaffold135G34930 Striga asiatica HOM05D004896 ORTHO05D006447 1.6e-114 416.8 330 67.6
MSTRG.3120 Avicennia marina HOM05D004896 ORTHO05D006447 3.6e-114 415.6 328 67.1
Sopen02g038330 Solanum pennellii HOM05D004896 ORTHO05D006447 3.6e-114 415.6 303 72.9
arahy.Tifrunner.gnm1.ann1.10VWGS Arachis hypogaea HOM05D004896 ORTHO05D006447 8.1e-114 414.5 254 80.3
arahy.Tifrunner.gnm1.ann1.5ILH08 Arachis hypogaea HOM05D004896 ORTHO05D006447 8.1e-114 414.5 254 80.3
PGSC0003DMG400012644 Solanum tuberosum HOM05D004896 ORTHO05D006447 8.1e-114 414.5 330 69.4
TPR.G1112 Trifolium pratense HOM05D004896 ORTHO05D006447 1.1e-113 414.1 329 66.6
Rhsim08G0046600 Rhododendron simsii HOM05D004896 ORTHO05D006447 1.8e-113 413.3 328 67.7
Ah.12g059440 Amaranthus hybridus HOM05D004896 ORTHO05D006447 3.1e-113 412.5 329 65.0
MBI19_g04325_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 4.0e-113 412.1 328 68.9
TAR629G1306 Trochodendron aralioides HOM05D004896 ORTHO05D006447 4.0e-113 412.1 331 68.6
Lalb_Chr14g0362991 Lupinus albus HOM05D004896 ORTHO05D006447 6.9e-113 411.4 318 69.2
DCAR_021752 Daucus carota HOM05D004896 ORTHO05D006447 2.0e-112 409.8 328 68.6
CAN.G473.48 Capsicum annuum HOM05D004896 ORTHO05D006447 5.8e-112 408.3 295 73.9
Cc07_g00300 Coffea canephora HOM05D004896 ORTHO05D006447 2.9e-111 406.0 238 81.5
EL10Ac9g21007 Beta vulgaris HOM05D004896 ORTHO05D006447 3.8e-111 405.6 328 65.2
EL10Ac5g10496 Beta vulgaris HOM05D004896 ORTHO05D006447 8.4e-111 404.4 328 65.5
Migut.H00045 Erythranthe guttata HOM05D004896 ORTHO05D006447 8.4e-111 404.4 328 64.9
Nitab4.5_0002158g0160 Nicotiana tabacum HOM05D004896 ORTHO05D006447 8.4e-111 404.4 332 66.3
Hund14985 Selenicereus undatus HOM05D004896 ORTHO05D006447 1.1e-110 404.1 318 68.2
vmacro18309 Vaccinium macrocarpon HOM05D004896 ORTHO05D006447 1.1e-110 404.1 236 82.2
ATR0099G063 Amborella trichopoda HOM05D004896 ORTHO05D006447 3.2e-110 402.5 256 76.2
AUR62030697 Chenopodium quinoa HOM05D004896 ORTHO05D006447 3.2e-110 402.5 236 80.5
Nitab4.5_0001031g0180 Nicotiana tabacum HOM05D004896 ORTHO05D006447 4.2e-110 402.1 328 65.5
Atru.chr6.2473 Acer truncatum HOM05D004896 ORTHO05D006447 1.3e-108 397.1 312 68.3
AUR62036338 Chenopodium quinoa HOM05D004896 ORTHO05D006447 1.3e-108 397.1 236 79.7
Lsat_1_v5_gn_0_30781 Lactuca sativa HOM05D004896 ORTHO05D006447 1.7e-108 396.7 329 63.5
THA.LOC104825307 Tarenaya hassleriana HOM05D004896 ORTHO05D006447 1.7e-108 396.7 330 64.5
HanXRQChr17g0549471 Helianthus annuus HOM05D004896 ORTHO05D006447 2.3e-108 396.4 255 75.3
CSS0036459 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 5.1e-108 395.2 380 60.3
PSO541G0959 Papaver somniferum HOM05D004896 ORTHO05D006447 1.5e-107 393.7 295 67.8
PSO675G8471 Papaver somniferum HOM05D004896 ORTHO05D006447 1.9e-107 393.3 326 64.4
ECA246G3787 Erigeron canadensis HOM05D004896 ORTHO05D006447 1.3e-106 390.6 328 62.8
CDE07G0249 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 1.6e-106 390.2 267 72.7
unitig_0.g536 Utricularia gibba HOM05D004896 ORTHO05D006447 4.8e-106 388.7 277 70.8
MELO3C014823.2 Cucumis melo HOM05D004896 ORTHO05D006447 8.1e-106 387.9 312 68.6
Sabra16G0218900 Salix brachista HOM05D004896 ORTHO05D006447 1.4e-105 387.1 408 55.6
FvH4_6g52310 Fragaria vesca HOM05D004896 ORTHO05D006447 1.8e-105 386.7 236 78.0
C04p47490 Brassica napus HOM05D004896 ORTHO05D006447 5.8e-104 381.7 289 68.5
BolC4t26350H Brassica oleracea HOM05D004896 ORTHO05D006447 5.8e-104 381.7 289 68.5
A04p13700 Brassica napus HOM05D004896 ORTHO05D006447 7.6e-104 381.3 301 68.1
BraA04t17030Z Brassica rapa HOM05D004896 ORTHO05D006447 7.6e-104 381.3 301 68.1
BcaB06g27542 Brassica carinata HOM05D004896 ORTHO05D006447 2.9e-103 379.4 294 67.7
Os07g0644000 Oryza sativa ssp. japonica HOM05D004896 ORTHO05D006447 8.4e-103 377.9 240 74.6
CARHR261290 Cardamine hirsuta HOM05D004896 ORTHO05D006447 7.1e-102 374.8 296 65.2
Zm00001eb329190 Zea mays HOM05D004896 ORTHO05D006447 9.3e-102 374.4 240 73.3
HPP92_020467 Vanilla planifolia HOM05D004896 ORTHO05D006447 1.6e-101 373.6 305 63.0
Carub.0007s3482 Capsella rubella HOM05D004896 ORTHO05D006447 4.6e-101 372.1 329 61.7
Sc03g0007130 Simmondsia chinensis HOM05D004896 ORTHO05D006447 1.0e-100 370.9 238 77.3
AT5G40660 Arabidopsis thaliana HOM05D004896 ORTHO05D006447 1.8e-100 370.2 329 61.7
Sp7g01200 Schrenkiella parvula HOM05D004896 ORTHO05D006447 5.1e-100 368.6 254 72.0
AL7G49080 Arabidopsis lyrata HOM05D004896 ORTHO05D006447 6.7e-100 368.2 329 61.7
HPP92_026167 Vanilla planifolia HOM05D004896 ORTHO05D006447 2.1e-98 363.2 236 72.9
Thhalv10027828m.g Eutrema salsugineum HOM05D004896 ORTHO05D006447 1.1e-97 360.9 329 59.9
Aa31LG9G960 Aethionema arabicum HOM05D004896 ORTHO05D006447 5.3e-97 358.6 257 69.6
FAN14G0298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 4.2e-94 349.0 342 59.6
SHI03827 Sapria himalayana HOM05D004896 ORTHO05D006447 7.1e-94 348.2 263 63.9
RcHm_v2.0_Chr2g0174241 Rosa chinensis HOM05D004896 ORTHO05D006447 9.3e-94 347.8 282 64.9
Peaxi162Scf00420g00251 Petunia axillaris HOM05D004896 ORTHO05D006447 1.5e-91 340.5 299 63.2
SEGI_10618 Sequoiadendron giganteum HOM05D004896 ORTHO05D006447 1.0e-84 317.8 270 58.9
Atru.chr3.2666 Acer truncatum HOM05D004896 ORTHO05D006447 2.5e-83 313.2 231 70.6
Oeu064389.1 Olea europaea HOM05D004896 ORTHO05D006447 5.9e-80 302.0 323 54.8
Sed0012039 Sechium edule HOM05D004896 ORTHO05D006447 1.7e-74 283.9 331 52.6
SGA_v2.0_scaffold18G08247 Striga asiatica HOM05D004896 ORTHO05D006447 3.8e-71 272.7 331 52.6
Hma1.2p1_1484F.1_g286430 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 1.9e-62 243.8 216 63.0
SMO200G0187 Selaginella moellendorffii HOM05D004896 ORTHO05D006447 2.2e-58 230.3 230 50.0
MD17G1019600 Malus domestica HOM05D004896 ORTHO05D006447 3.7e-58 229.6 204 61.8
Nitab4.5_0002158g0260 Nicotiana tabacum HOM05D002474 ORTHO05D007142 3.5e-56 223.0 218 60.1
Pp3c2_19250 Physcomitrium patens HOM05D004896 ORTHO05D006447 1.3e-55 221.1 301 43.9
Actinidia16947 Actinidia chinensis HOM05D004896 ORTHO05D006447 5.0e-55 219.2 217 58.1
Mapoly0004s0068 Marchantia polymorpha HOM05D004896 ORTHO05D006447 8.5e-55 218.4 225 49.3
EL10Ac5g11826 Beta vulgaris HOM05D004896 ORTHO05D006447 2.5e-54 216.9 137 73.0
AagrBONN_evm.TU.Sc2ySwM_362.2811 Anthoceros agrestis HOM05D004896 ORTHO05D006447 9.4e-54 214.9 256 44.5
Atru.chr4.450 Acer truncatum HOM05D004896 ORTHO05D006447 1.4e-52 211.1 217 58.1
Hma1.2p1_1484F.1_g286403 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 7.0e-49 198.7 113 84.1
Hma1.2p1_1484F.1_g286440 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 7.0e-49 198.7 113 84.1
CBR_g4059 Chara braunii HOM05D004896 ORTHO05D006447 1.6e-48 197.6 252 41.7
Cc06_g20980 Coffea canephora HOM05D004896 ORTHO05D006447 4.5e-48 196.1 163 64.4
Duzib147G0160 Durio zibethinus HOM05D004896 ORTHO05D006447 1.3e-47 194.5 112 83.9
AUR62030692 Chenopodium quinoa HOM05D004896 ORTHO05D006447 2.5e-46 190.3 109 83.5
PRCOL_00001693 Prasinoderma coloniale HOM05D004896 ORTHO05D006447 3.5e-40 169.9 225 38.7
Glyma.19G080702 Glycine max HOM05D004896 ORTHO05D006447 6.1e-37 159.1 100 79.0
MCO13G572 Micromonas commoda HOM05D004896 ORTHO05D006447 7.5e-35 152.1 231 36.8
Atru.chr11.190 Acer truncatum HOM05D004896 ORTHO05D006447 7.3e-30 135.6 141 56.7
MBI19_g02443_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 1.0e-28 131.7 77 85.7
Atru.chr7.121 Acer truncatum HOM05D005216 ORTHO05D006453 3.7e-26 123.2 114 64.0
Cre17.g726250 Chlamydomonas reinhardtii HOM05D004896 ORTHO05D006447 1.4e-25 121.3 203 33.0
CDE12G0511 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 1.2e-24 118.2 96 64.6
Atru.chr2.3725 Acer truncatum HOM05D004896 ORTHO05D006447 3.3e-22 110.2 65 83.1
Atru.chr1.36 Acer truncatum HOM05D004896 ORTHO05D006447 1.2e-21 108.2 65 81.5
Atru.chr2.563 Acer truncatum HOM05D004866 ORTHO05D005716 2.8e-21 107.1 65 81.5
BcaC04g20647 Brassica carinata HOM05D004896 ORTHO05D006447 4.9e-18 96.3 102 58.8
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 4.9e-18 96.3 102 58.8
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 4.9e-18 96.3 102 58.8
BraA05t20477Z Brassica rapa HOM05D004896 ORTHO05D024046 1.9e-17 94.4 57 77.2
Ah.07g205180 Amaranthus hybridus HOM05D004896 ORTHO05D060504 1.6e-16 91.3 154 37.0
BcaB01g05885 Brassica carinata HOM05D004896 ORTHO05D024046 2.1e-16 90.9 127 42.5
Atru.chr1.2050 Acer truncatum HOM05D004896 ORTHO05D006447 3.9e-15 86.7 89 59.6
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 6.6e-15 85.9 52 78.8
A05p15620 Brassica napus HOM05D004896 ORTHO05D024046 4.3e-14 83.2 47 80.9
BcaC01g04583 Brassica carinata HOM05D004896 ORTHO05D006447 1.8e-12 77.8 47 78.7
Actinidia35788 Actinidia chinensis HOM05D004896 ORTHO05D006447 2.0e-11 74.3 158 34.8
TAR628G1566 Trochodendron aralioides HOM05D004896 ORTHO05D006447 1.6e-08 64.7 79 48.1
CSS0048304 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 5.6e-06 56.2 92 46.7


User provided reference genes

Program Settings