Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G029700 Carya illinoinensis HOM05D005478 ORTHO05D006426 4.4e-98 361.3 185 100.0
CiPaw.03G045600 Carya illinoinensis HOM05D005478 ORTHO05D006426 2.1e-63 246.1 189 71.4
Haze_14759 Corylus avellana HOM05D005478 ORTHO05D006426 8.4e-57 224.2 194 67.5
Cfa007338 Carpinus fangiana HOM05D005478 ORTHO05D006426 1.2e-55 220.3 192 67.7
QL02p074001 Quercus lobata HOM05D005478 ORTHO05D006426 1.8e-54 216.5 188 66.0
GSVIVG01032384001 Vitis vinifera HOM05D005478 ORTHO05D006426 7.9e-47 191.0 182 62.1
Prupe.3G293900 Prunus persica HOM05D005478 ORTHO05D006426 1.5e-45 186.8 192 56.8
Cpa.g.sc108.77 Carica papaya HOM05D005478 ORTHO05D006426 3.7e-44 182.2 192 55.7
TWI56G0849 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 9.1e-43 177.6 184 55.4
TWI36G1604 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 5.0e-41 171.8 185 54.1
Hma1.2p1_0818F.1_g223270 Hydrangea macrophylla HOM05D005478 ORTHO05D006426 2.1e-39 166.4 182 50.5
Sp2g16690 Schrenkiella parvula HOM05D005478 ORTHO05D006426 2.1e-39 166.4 189 50.8
Ciclev10016916m.g Citrus clementina HOM05D005478 ORTHO05D006426 6.1e-39 164.9 178 56.7
Lalb_Chr22g0360721 Lupinus albus HOM05D005478 ORTHO05D006426 6.1e-39 164.9 193 53.4
TWI12G0237 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 6.1e-39 164.9 185 54.6
CsaV3_3G042880 Cucumis sativus L. HOM05D005478 ORTHO05D006426 7.9e-39 164.5 186 49.5
ClCG10G013780 Citrullus lanatus HOM05D005478 ORTHO05D006426 1.0e-38 164.1 191 52.4
Sed0022021 Sechium edule HOM05D005478 ORTHO05D006426 1.4e-38 163.7 175 53.7
Manes.17G111100 Manihot esculenta HOM05D005478 ORTHO05D006426 2.3e-38 162.9 180 53.9
COL.COLO4_30424 Corchorus olitorius HOM05D005478 ORTHO05D006426 5.1e-38 161.8 186 48.9
Potri.001G343200 Populus trichocarpa HOM05D005478 ORTHO05D006426 1.1e-37 160.6 183 51.9
Sabra16G0222600 Salix brachista HOM05D005478 ORTHO05D006426 2.6e-37 159.5 188 52.1
MELO3C026588.2 Cucumis melo HOM05D005478 ORTHO05D006426 3.3e-37 159.1 186 48.9
THA.LOC104825319 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 4.4e-37 158.7 181 53.0
Actinidia36124 Actinidia chinensis HOM05D005478 ORTHO05D006426 7.4e-37 157.9 191 50.3
CANSAT64G0255 Cannabis sativa HOM05D005478 ORTHO05D006426 2.2e-36 156.4 191 54.5
Duzib160G0719 Durio zibethinus HOM05D005478 ORTHO05D006426 2.2e-36 156.4 188 50.0
Duzib235G1061 Durio zibethinus HOM05D005478 ORTHO05D006426 1.1e-35 154.1 189 50.3
Thecc.06G091700 Theobroma cacao HOM05D005478 ORTHO05D006426 1.4e-35 153.7 189 48.1
Thhalv10004961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 2.4e-35 152.9 186 46.2
VMungo0464G1533 Vigna mungo HOM05D005478 ORTHO05D006426 4.1e-35 152.1 175 52.0
Aa31LG2G5140 Aethionema arabicum HOM05D005478 ORTHO05D006426 9.1e-35 151.0 195 46.7
Carub.0005s0595 Capsella rubella HOM05D005478 ORTHO05D006426 9.1e-35 151.0 187 48.1
AUR62041940 Chenopodium quinoa HOM05D005478 ORTHO05D006426 9.1e-35 151.0 186 47.3
AUR62028419 Chenopodium quinoa HOM05D005478 ORTHO05D006426 2.0e-34 149.8 186 47.8
AL5G16940 Arabidopsis lyrata HOM05D005478 ORTHO05D006426 2.6e-34 149.4 190 45.8
Atru.chr6.2431 Acer truncatum HOM05D005478 ORTHO05D006426 3.4e-34 149.1 174 51.1
Medtr6g004420 Medicago truncatula HOM05D005478 ORTHO05D006426 3.4e-34 149.1 174 51.1
TPR.G31952 Trifolium pratense HOM05D005478 ORTHO05D006426 4.5e-34 148.7 174 51.7
BcaB04g19441 Brassica carinata HOM05D005478 ORTHO05D006426 2.9e-33 146.0 182 52.2
Hund15527 Selenicereus undatus HOM05D005478 ORTHO05D006426 2.9e-33 146.0 174 50.6
MSTRG.3284 Avicennia marina HOM05D005478 ORTHO05D006426 3.8e-33 145.6 181 50.3
CARHR148890 Cardamine hirsuta HOM05D005478 ORTHO05D006426 3.8e-33 145.6 176 48.3
Sc07g0003180 Simmondsia chinensis HOM05D005478 ORTHO05D006426 5.0e-33 145.2 186 47.8
Thhalv10027961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 8.5e-33 144.4 177 45.2
FAN02G1690 Fragaria x ananassa HOM05D005478 ORTHO05D006426 8.5e-33 144.4 193 48.2
Actinidia18441 Actinidia chinensis HOM05D005478 ORTHO05D006426 1.1e-32 144.1 187 47.6
AT3G27520 Arabidopsis thaliana HOM05D005478 ORTHO05D006426 1.1e-32 144.1 197 44.7
FAN05G2721 Fragaria x ananassa HOM05D005478 ORTHO05D006426 1.1e-32 144.1 193 47.7
PGR142G0633 Punica granatum HOM05D005478 ORTHO05D006426 1.4e-32 143.7 184 45.7
Lsat_1_v5_gn_0_18280 Lactuca sativa HOM05D005478 ORTHO05D006426 2.5e-32 142.9 178 51.1
unitig_88.g27693 Utricularia gibba HOM05D000631 ORTHO05D000524 3.2e-32 142.5 185 47.0
Actinidia05981 Actinidia chinensis HOM05D005478 ORTHO05D006426 7.2e-32 141.4 177 48.0
Duzib192G0894 Durio zibethinus HOM05D005478 ORTHO05D006426 7.2e-32 141.4 176 47.7
MSTRG.15534 Avicennia marina HOM05D005478 ORTHO05D006426 9.4e-32 141.0 187 50.3
TAR371G0105 Trochodendron aralioides HOM05D005478 ORTHO05D006426 2.7e-31 139.4 188 47.3
PGSC0003DMG400012636 Solanum tuberosum HOM05D005478 ORTHO05D006426 3.6e-31 139.0 183 50.3
Sopen02g038220 Solanum pennellii HOM05D005478 ORTHO05D006426 4.7e-31 138.7 183 50.3
Ca_04142_v3 Cicer arietinum L. HOM05D005478 ORTHO05D006426 6.1e-31 138.3 174 49.4
DCAR_011260 Daucus carota HOM05D005478 ORTHO05D006426 6.1e-31 138.3 182 47.3
Solyc02g093450.3 Solanum lycopersicum HOM05D005478 ORTHO05D006426 6.1e-31 138.3 180 48.9
TAR629G3442 Trochodendron aralioides HOM05D005478 ORTHO05D006426 6.1e-31 138.3 182 48.9
A06p41110 Brassica napus HOM05D005478 ORTHO05D006426 1.0e-30 137.5 176 45.5
C07p36630 Brassica napus HOM05D005478 ORTHO05D006426 1.0e-30 137.5 181 47.5
BraA06t27034Z Brassica rapa HOM05D005478 ORTHO05D006426 1.0e-30 137.5 176 45.5
FAN14G4849 Fragaria x ananassa HOM05D005478 ORTHO05D006426 1.0e-30 137.5 194 46.4
BcaC06g30982 Brassica carinata HOM05D005478 ORTHO05D006426 1.4e-30 137.1 185 46.5
FvH4_6g51790 Fragaria vesca HOM05D005478 ORTHO05D006426 1.4e-30 137.1 194 46.4
FAN09G1593 Fragaria x ananassa HOM05D005478 ORTHO05D006426 1.4e-30 137.1 194 46.4
BraA09t35982Z Brassica rapa HOM05D005478 ORTHO05D006426 1.8e-30 136.7 178 46.6
CSS0007505 Camellia sinensis var. sinensis HOM05D005478 ORTHO05D006426 2.3e-30 136.3 188 47.3
MD09G1022900 Malus domestica HOM05D005478 ORTHO05D006426 3.9e-30 135.6 195 46.7
Oeu033728.1 Olea europaea HOM05D005478 ORTHO05D006426 3.9e-30 135.6 177 49.2
Rhsim10G0014600 Rhododendron simsii HOM05D005478 ORTHO05D006426 5.2e-30 135.2 184 46.2
A09p03440 Brassica napus HOM05D005478 ORTHO05D006426 6.7e-30 134.8 178 46.6
Lalb_Chr24g0403571 Lupinus albus HOM05D005478 ORTHO05D006426 6.7e-30 134.8 193 48.2
RcHm_v2.0_Chr2g0173291 Rosa chinensis HOM05D005478 ORTHO05D006426 1.1e-29 134.0 188 45.2
Migut.K01412 Erythranthe guttata HOM05D005478 ORTHO05D006426 1.5e-29 133.7 197 44.2
SGA_v2.0_scaffold47G17517 Striga asiatica HOM05D005478 ORTHO05D006426 1.5e-29 133.7 188 44.7
Glyma.05G002400 Glycine max HOM05D005478 ORTHO05D006426 4.4e-29 132.1 173 45.7
Gohir.A09G082300 Gossypium hirsutum HOM05D005478 ORTHO05D006426 4.4e-29 132.1 188 46.8
BolC9t53284H Brassica oleracea HOM05D005478 ORTHO05D006426 5.7e-29 131.7 180 47.8
Gohir.D09G082100 Gossypium hirsutum HOM05D005478 ORTHO05D006426 2.2e-28 129.8 185 44.9
BolC7t44179H Brassica oleracea HOM05D005478 ORTHO05D006426 2.8e-28 129.4 188 44.7
Gorai.006G097900 Gossypium raimondii HOM05D005478 ORTHO05D006426 2.8e-28 129.4 184 44.6
BcaC04g23900 Brassica carinata HOM05D005478 ORTHO05D006426 3.7e-28 129.0 178 46.6
C09p03650 Brassica napus HOM05D005478 ORTHO05D006426 3.7e-28 129.0 178 46.6
BcaC06g33809 Brassica carinata HOM05D005478 ORTHO05D006426 8.2e-28 127.9 181 45.9
Glyma.19G002600 Glycine max HOM05D005478 ORTHO05D006426 8.2e-28 127.9 173 47.4
MD17G1022200 Malus domestica HOM05D005478 ORTHO05D006426 1.1e-27 127.5 200 44.0
arahy.Tifrunner.gnm1.ann1.47572L Arachis hypogaea HOM05D005478 ORTHO05D006426 1.4e-27 127.1 178 45.5
Lj2g0025845 Lotus japonicus HOM05D005478 ORTHO05D006426 1.8e-27 126.7 174 46.0
Eucgr.I01730 Eucalyptus grandis HOM05D005478 ORTHO05D006426 2.4e-27 126.3 182 42.9
Phvul.004G004600 Phaseolus vulgaris HOM05D005478 ORTHO05D006426 1.2e-26 124.0 177 46.9
Psat1g053440 Pisum sativum HOM05D005478 ORTHO05D006426 1.6e-26 123.6 171 46.8
vmacro05877 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 2.2e-25 119.8 217 39.2
ATR0824G160 Amborella trichopoda HOM05D005478 ORTHO05D006426 1.5e-24 117.1 174 42.0
HPP92_006182 Vanilla planifolia HOM05D005478 ORTHO05D006426 1.5e-24 117.1 174 43.1
Peaxi162Scf00700g00430 Petunia axillaris HOM05D005478 ORTHO05D006426 3.2e-24 115.9 178 43.3
arahy.Tifrunner.gnm1.ann1.WAXE9D Arachis hypogaea HOM05D005478 ORTHO05D006426 4.2e-24 115.5 204 40.2
Aqoxy5G03740 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 9.4e-24 114.4 185 40.0
PSO063G0871 Papaver somniferum HOM05D005478 ORTHO05D006426 9.4e-24 114.4 176 40.3
Nn3g16686 Nelumbo nucifera HOM05D005478 ORTHO05D006426 2.1e-23 113.2 183 43.7
THA.LOC104825211 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 1.4e-22 110.5 136 49.3
HanXRQChr07g0199031 Helianthus annuus HOM05D005478 ORTHO05D006426 3.0e-22 109.4 176 40.9
PSO754G0087 Papaver somniferum HOM05D005478 ORTHO05D006426 5.2e-22 108.6 176 38.6
CDE09G0806 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 6.7e-22 108.2 175 39.4
Ah.02g128220 Amaranthus hybridus HOM05D005478 ORTHO05D006426 8.8e-22 107.8 179 38.0
Oeu048609.1 Olea europaea HOM05D005478 ORTHO05D006426 8.8e-22 107.8 178 41.0
PSO478G1356 Papaver somniferum HOM05D005478 ORTHO05D006426 2.0e-21 106.7 187 39.0
PSO017G4510 Papaver somniferum HOM05D005478 ORTHO05D006426 2.2e-20 103.2 186 38.7
CDE02G4674 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 2.8e-20 102.8 176 38.6
SGA_v2.0_scaffold30G12408 Striga asiatica HOM05D005478 ORTHO05D006426 2.8e-20 102.8 192 38.0
Lsat_1_v5_gn_2_91160 Lactuca sativa HOM05D005478 ORTHO05D006426 4.8e-20 102.1 177 41.8
ECA238G3024 Erigeron canadensis HOM05D005478 ORTHO05D006426 6.3e-20 101.7 176 40.3
HanXRQChr14g0451171 Helianthus annuus HOM05D005478 ORTHO05D006426 1.1e-19 100.9 176 39.2
vmacro18294 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 1.8e-19 100.1 222 36.9
SEGI_00200 Sequoiadendron giganteum HOM05D005478 ORTHO05D006426 2.0e-18 96.7 179 37.4
MBI14_g36718_MAGBIO Magnolia biondii HOM05D005478 ORTHO05D006426 4.5e-18 95.5 175 40.0
Aqoxy1G02464 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 5.9e-18 95.1 165 40.0
Dinv33426 Davidia involucrata HOM05D005478 ORTHO05D006426 9.8e-13 77.8 51 76.5
Cc07_g01510 Coffea canephora HOM05D005478 ORTHO05D006426 2.2e-12 76.6 62 59.7
Gohir.D05G130900 Gossypium hirsutum HOM05D005478 ORTHO05D006426 1.4e-11 73.9 119 40.3
Zm00001eb183740 Zea mays HOM05D044595 ORTHO05D006426 1.4e-11 73.9 177 29.9
EL10Ac6g14100 Beta vulgaris HOM05D005478 ORTHO05D006426 2.0e-10 70.1 130 42.3
Os02g0595300 Oryza sativa ssp. japonica HOM05D005478 ORTHO05D006426 4.5e-10 68.9 178 28.1
Nn3g16214 Nelumbo nucifera HOM05D005478 ORTHO05D006426 5.9e-10 68.6 89 48.3
Dinv25725 Davidia involucrata HOM05D005478 ORTHO05D006426 1.0e-09 67.8 89 43.8
MBI10_g11211_MAGBIO Magnolia biondii HOM05D005478 ORTHO05D006426 1.7e-09 67.0 175 32.6
Nitab4.5_0000326g0190 Nicotiana tabacum HOM05D006502 ORTHO05D007704 1.9e-08 63.5 49 65.3
MBI07_g39476_MAGBIO Magnolia biondii HOM05D005478 ORTHO05D006426 3.2e-08 62.8 53 56.6
Zm00001eb246060 Zea mays HOM05D044595 ORTHO05D006426 5.5e-08 62.0 199 26.6
Nitab4.5_0005593g0050 Nicotiana tabacum HOM05D005478 ORTHO05D006426 1.6e-07 60.5 150 32.7
DCAR_022257 Daucus carota HOM05D001346 ORTHO05D006426 1.0e-06 57.8 43 55.8
Nn8g38687 Nelumbo nucifera HOM05D046178 ORTHO05D006426 1.4e-06 57.4 62 53.2
SHI03806 Sapria himalayana HOM05D005478 ORTHO05D006426 8.8e-06 54.7 131 31.3


User provided reference genes

Program Settings