Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 1.0e-179 633.3 311 100.0
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 8.6e-155 550.4 311 85.5
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 1.8e-152 542.7 311 85.2
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 9.9e-151 537.0 310 86.1
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 6.6e-147 524.2 310 82.6
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 1.9e-146 522.7 312 83.0
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 1.2e-145 520.0 312 81.4
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 2.1e-145 519.2 309 81.9
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 4.4e-143 511.5 312 79.5
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 5.8e-143 511.1 310 81.3
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 5.8e-143 511.1 310 81.3
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 5.8e-143 511.1 312 82.1
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 5.8e-143 511.1 310 81.6
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 1.7e-142 509.6 312 80.4
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.2e-142 509.2 312 81.1
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.2e-142 509.2 312 81.1
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 2.2e-142 509.2 312 81.1
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 1.1e-141 506.9 316 78.2
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 9.3e-141 503.8 314 80.6
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 2.7e-140 502.3 312 79.2
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 3.5e-140 501.9 311 80.1
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 4.6e-140 501.5 311 80.7
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 4.6e-140 501.5 313 79.6
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 6.0e-140 501.1 313 78.9
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 6.6e-139 497.7 311 79.7
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 8.7e-139 497.3 312 79.8
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 1.1e-138 496.9 312 78.5
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 1.1e-138 496.9 309 79.3
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 1.9e-138 496.1 309 79.3
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 1.9e-138 496.1 311 77.8
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 1.9e-138 496.1 309 79.9
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 3.3e-138 495.4 309 79.3
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 4.3e-138 495.0 309 78.6
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 5.6e-138 494.6 312 79.2
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 9.6e-138 493.8 309 79.0
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.8e-137 492.3 311 77.8
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 2.8e-137 492.3 312 78.8
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 4.8e-137 491.5 311 78.1
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 6.2e-137 491.1 313 78.0
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.2e-137 491.1 311 77.8
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 6.2e-137 491.1 311 78.8
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 6.2e-137 491.1 313 79.6
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 8.1e-137 490.7 331 75.2
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 1.1e-136 490.3 311 78.1
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.1e-136 490.3 305 77.7
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 1.4e-136 490.0 308 76.3
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 1.8e-136 489.6 313 78.6
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 3.1e-136 488.8 310 77.1
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 3.1e-136 488.8 312 77.9
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.1e-136 488.8 311 77.5
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 4.0e-136 488.4 314 78.0
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 4.0e-136 488.4 312 78.8
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 4.0e-136 488.4 312 77.6
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 5.3e-136 488.0 310 77.4
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 4.5e-135 485.0 310 77.4
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 4.5e-135 485.0 309 78.0
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 5.8e-135 484.6 312 76.9
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 5.8e-135 484.6 312 77.2
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 7.6e-135 484.2 312 78.5
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 2.2e-134 482.6 322 76.4
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 2.2e-134 482.6 308 79.2
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 2.9e-134 482.3 309 77.3
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 3.8e-134 481.9 312 78.5
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 4.9e-134 481.5 312 77.2
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 6.4e-134 481.1 310 76.5
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 8.4e-134 480.7 315 76.8
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 1.4e-133 479.9 313 75.7
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 3.2e-133 478.8 310 76.1
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 4.2e-133 478.4 308 77.6
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 4.2e-133 478.4 309 75.4
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 9.3e-133 477.2 317 75.4
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 9.3e-133 477.2 312 75.3
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 2.1e-132 476.1 311 75.6
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 2.7e-132 475.7 319 76.2
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 2.7e-132 475.7 319 76.2
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 3.5e-132 475.3 312 75.0
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 4.6e-132 474.9 321 74.5
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 1.0e-131 473.8 309 77.7
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 1.0e-131 473.8 312 77.2
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 3.0e-131 472.2 319 74.0
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 3.9e-131 471.9 330 71.8
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 1.9e-130 469.5 263 87.8
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 2.5e-130 469.2 314 76.8
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 3.3e-130 468.8 308 75.0
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 5.6e-130 468.0 313 74.4
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 7.4e-130 467.6 313 74.1
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 9.6e-130 467.2 310 73.5
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 9.6e-130 467.2 282 80.9
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 1.6e-129 466.5 324 74.1
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 2.8e-129 465.7 321 73.8
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 1.8e-128 463.0 299 76.6
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 9.0e-128 460.7 328 72.0
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 1.2e-127 460.3 321 73.2
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 1.2e-127 460.3 321 73.2
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 1.7e-126 456.4 315 73.7
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 2.9e-126 455.7 310 73.9
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 1.9e-125 453.0 282 79.1
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 4.2e-125 451.8 317 71.9
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 1.6e-124 449.9 333 70.3
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 6.0e-124 448.0 312 73.1
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 6.0e-124 448.0 310 72.3
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 3.9e-123 445.3 309 72.5
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.6e-121 439.9 262 82.1
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 5.8e-119 431.4 247 84.6
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 1.1e-117 427.2 319 66.1
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 1.5e-114 416.8 263 77.6
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 2.2e-113 412.9 313 67.1
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 2.2e-113 412.9 322 64.0
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.3e-113 411.4 305 67.2
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 2.0e-111 406.4 326 65.3
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 2.2e-110 402.9 308 66.9
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 5.7e-106 388.3 221 85.5
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 2.2e-105 386.3 312 66.0
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.6e-103 379.4 312 65.7
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 1.4e-101 373.6 332 59.0
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 2.1e-100 369.8 231 77.1
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 1.8e-99 366.7 318 59.7
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 1.8e-99 366.7 226 75.7
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 1.7e-97 360.1 307 61.6
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 3.7e-97 359.0 299 62.9
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 6.3e-97 358.2 336 54.2
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 2.0e-90 336.7 204 80.4
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 3.1e-88 329.3 222 73.4
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 8.5e-86 321.2 320 56.2
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 6.8e-83 311.6 254 61.0
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 1.1e-80 304.3 165 89.1
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 2.3e-75 286.6 210 69.0
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 2.8e-73 279.6 238 59.7
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 1.8e-72 276.9 316 48.7
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 1.6e-71 273.9 157 85.4
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 3.0e-67 259.6 150 84.0
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 1.3e-65 254.2 170 76.5
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 1.1e-64 251.1 361 41.8
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.6e-60 237.3 134 83.6
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 4.7e-60 235.7 170 67.1
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 1.4e-56 224.2 165 68.5
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.1e-52 210.3 112 88.4
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.1e-51 206.5 121 81.0
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 1.2e-50 204.5 288 42.4
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 1.2e-50 204.5 131 77.1
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.8e-50 202.2 121 77.7
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 7.5e-50 201.8 121 77.7
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 7.5e-50 201.8 121 77.7
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 9.8e-50 201.4 116 82.8
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.9e-49 199.9 121 76.9
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.7e-49 199.5 118 78.8
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.3e-49 198.4 118 78.8
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 2.4e-48 196.8 238 50.4
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.1e-48 196.1 118 77.1
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 4.1e-48 196.1 118 78.8
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.6e-46 188.7 295 42.4
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.3e-41 174.5 156 59.6
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.7e-41 174.1 93 89.2
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 1.4e-40 171.0 102 76.5
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 1.4e-40 171.0 102 78.4
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 8.4e-33 145.2 84 78.6
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 4.2e-32 142.9 135 57.8
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 2.1e-28 130.6 94 69.1
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 1.2e-26 124.8 95 66.3
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 1.2e-26 124.8 95 66.3
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.3e-21 106.3 64 82.8
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.6e-21 105.1 64 82.8
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.1e-20 104.0 74 74.3
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-19 101.3 92 56.5
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.2e-18 98.2 106 51.9
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 2.9e-17 93.6 62 67.7
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.8e-17 93.2 92 54.3
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.1e-16 91.7 92 54.3
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 2.4e-16 90.5 50 84.0
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 2.4e-16 90.5 50 84.0
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.1e-16 89.0 50 82.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 7.1e-16 89.0 50 82.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.6e-15 87.8 47 83.0
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 2.1e-15 87.4 81 58.0
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 7.9e-15 85.5 61 63.9
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 5.1e-14 82.8 75 57.3
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 1.5e-10 71.2 124 40.3
QL05p086362 Quercus lobata HOM05D003958 ORTHO05D044828 2.5e-08 63.9 46 67.4
Medtr2g014570 Medicago truncatula HOM05D003958 ORTHO05D004864 5.5e-08 62.8 66 59.1
QL05p086256 Quercus lobata HOM05D000045 ORTHO05D004773 7.1e-08 62.4 35 80.0
BcaC03g13467 Brassica carinata HOM05D002486 ORTHO05D002606 3.5e-07 60.1 153 32.7


User provided reference genes

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