Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 7.1e-177 624.0 358 100.0
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.4e-127 460.3 358 77.7
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 3.0e-119 432.6 367 64.3
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 1.1e-116 424.1 397 59.7
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 3.2e-105 386.0 362 68.8
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 7.5e-94 348.2 381 54.1
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 6.3e-93 345.1 378 55.3
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 3.4e-86 322.8 373 53.6
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 7.0e-84 315.1 372 52.2
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 1.2e-83 314.3 378 54.2
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 3.5e-83 312.8 363 57.9
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 4.6e-83 312.4 368 51.4
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 4.6e-83 312.4 379 55.1
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.0e-82 311.2 369 57.5
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 3.9e-82 309.3 364 51.6
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 5.0e-82 308.9 364 51.6
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 1.5e-81 307.4 364 51.4
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 1.5e-81 307.4 378 55.8
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 7.3e-81 305.1 394 50.5
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 6.2e-80 302.0 379 54.4
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.1e-79 301.2 364 51.1
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 4.0e-79 299.3 360 50.8
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 8.9e-79 298.1 365 59.2
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.5e-78 297.4 366 59.6
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 3.4e-78 296.2 378 48.1
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 4.4e-78 295.8 383 47.5
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 7.5e-78 295.0 378 47.9
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 9.8e-78 294.7 376 54.0
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 6.4e-77 292.0 378 47.6
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 6.4e-77 292.0 376 52.9
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 9.2e-76 288.1 366 49.2
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 2.7e-75 286.6 381 48.3
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 4.6e-75 285.8 364 47.5
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.0e-74 284.6 369 55.6
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 1.7e-74 283.9 366 53.8
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.3e-74 283.5 362 46.1
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.0e-74 282.3 362 45.9
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 4.7e-72 275.8 383 46.7
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.4e-71 274.2 372 54.3
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 2.6e-70 270.0 370 48.4
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 1.7e-69 267.3 370 48.1
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 6.4e-69 265.4 407 43.0
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 7.1e-68 261.9 374 45.5
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 7.1e-68 261.9 377 44.6
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 2.1e-67 260.4 414 46.9
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.0e-66 258.1 369 45.8
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 6.2e-64 248.8 368 44.8
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.1e-63 248.1 368 44.3
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.1e-63 246.5 369 46.6
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 3.1e-63 246.5 368 45.7
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 2.2e-61 240.4 385 46.8
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 4.9e-61 239.2 422 40.5
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 8.4e-61 238.4 369 44.4
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 1.4e-60 237.7 388 41.8
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 7.1e-60 235.3 366 49.2
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 9.2e-60 235.0 321 45.5
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 9.2e-60 235.0 321 45.5
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 4.6e-59 232.6 370 44.1
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 6.0e-59 232.3 358 42.5
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 5.1e-58 229.2 365 39.7
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 5.6e-57 225.7 322 49.7
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 3.6e-56 223.0 393 38.4
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 1.2e-54 218.0 367 41.7
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 5.8e-54 215.7 365 40.8
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 1.7e-53 214.2 402 38.6
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 4.9e-53 212.6 374 39.8
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 8.4e-53 211.8 368 42.4
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 1.9e-52 210.7 400 38.2
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.1e-51 207.2 385 44.9
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 3.9e-50 203.0 364 39.3
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 6.6e-50 202.2 367 37.9
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 1.1e-49 201.4 374 38.8
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.1e-48 197.2 377 43.0
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 8.1e-48 195.3 364 37.6
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 1.1e-47 194.9 360 39.2
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 6.9e-47 192.2 380 37.1
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 9.0e-47 191.8 383 36.6
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 1.5e-46 191.0 383 37.9
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 2.6e-46 190.3 379 38.3
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.2e-44 183.3 366 36.9
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 5.4e-44 182.6 373 34.0
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 9.3e-44 181.8 372 37.4
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.1e-43 180.6 387 37.0
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 3.5e-43 179.9 357 35.0
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 4.6e-43 179.5 375 37.1
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 6.0e-43 179.1 382 43.7
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 7.9e-43 178.7 363 36.1
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 3.9e-42 176.4 356 34.8
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 5.1e-42 176.0 362 37.3
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 8.7e-42 175.3 376 35.4
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 2.5e-41 173.7 359 34.5
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 2.1e-40 170.6 363 35.8
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 2.4e-39 167.2 350 35.7
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 2.4e-39 167.2 135 65.9
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 5.3e-39 166.0 362 34.8
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.2e-38 164.9 374 36.1
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.5e-38 164.5 363 35.0
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 2.6e-38 163.7 383 36.0
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 4.5e-38 162.9 383 36.0
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.5e-38 162.9 378 34.4
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 1.7e-37 161.0 361 37.1
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 1.7e-37 161.0 361 35.2
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 1.7e-37 161.0 361 35.2
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 2.2e-37 160.6 361 35.2
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 6.4e-37 159.1 355 32.7
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 8.4e-37 158.7 380 31.1
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 1.8e-34 151.0 368 33.7
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 2.3e-34 150.6 363 35.0
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 5.1e-34 149.4 149 54.4
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 8.7e-34 148.7 312 37.5
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 1.9e-33 147.5 363 33.1
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 1.9e-33 147.5 312 37.5
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 1.6e-32 144.4 121 66.1
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.8e-32 143.7 363 32.5
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 8.2e-32 142.1 379 36.9
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 8.2e-32 142.1 355 32.4
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.4e-31 141.4 331 40.5
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.8e-31 141.0 167 49.7
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 9.0e-31 138.7 357 30.5
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.5e-30 137.9 360 32.5
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 2.6e-30 137.1 490 29.8
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 4.5e-30 136.3 357 33.1
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.0e-29 135.2 355 32.7
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 2.2e-29 134.0 118 56.8
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 4.9e-29 132.9 152 49.3
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 4.9e-29 132.9 156 50.0
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.4e-28 131.3 445 35.1
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 5.5e-28 129.4 152 48.0
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 5.5e-28 129.4 152 48.0
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 3.5e-27 126.7 356 32.3
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 7.9e-27 125.6 152 46.7
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 7.9e-27 125.6 152 46.7
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 1.0e-26 125.2 156 47.4
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 1.0e-26 125.2 156 47.4
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 2.3e-26 124.0 143 48.3
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 5.1e-26 122.9 361 30.5
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 5.1e-26 122.9 169 46.7
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 5.1e-26 122.9 107 61.7
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.1e-25 121.7 104 63.5
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.1e-25 121.7 104 63.5
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.1e-25 121.7 109 56.0
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 2.2e-24 117.5 125 50.4
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 1.4e-23 114.8 154 46.8
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 1.4e-23 114.8 154 46.8
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 1.4e-23 114.8 154 46.8
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 1.8e-23 114.4 93 60.2
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 6.9e-23 112.5 177 41.2
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 1.5e-22 111.3 171 42.7
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 2.0e-22 110.9 140 49.3
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 4.5e-22 109.8 73 78.1
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 4.5e-22 109.8 112 53.6
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 1.3e-21 108.2 350 37.1
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 2.9e-21 107.1 160 39.4
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 6.5e-21 105.9 132 47.7
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 6.5e-21 105.9 133 46.6
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.4e-20 104.8 112 48.2
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 4.2e-20 103.2 112 52.7
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 5.5e-20 102.8 133 45.9
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 4.6e-19 99.8 111 42.3
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 4.6e-19 99.8 120 42.5
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.8e-18 97.8 73 68.5
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 2.0e-17 94.4 366 28.1
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 7.4e-17 92.4 157 38.2
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 6.9e-15 85.9 162 35.8
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 1.7e-13 81.3 105 46.7
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 8.5e-13 79.0 165 35.2
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 1.1e-12 78.6 155 35.5
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 1.9e-12 77.8 105 44.8
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.2e-12 76.6 89 44.9
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 9.4e-12 75.5 41 85.4
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 7.9e-11 72.4 132 34.8
Sabra16G0293500 Salix brachista HOM05D003874 ORTHO05D004545 7.7e-06 55.8 103 35.0


User provided reference genes

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