Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 5.6e-81 304.3 161 100.0
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 7.3e-73 277.3 158 91.8
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 8.9e-71 270.4 158 89.2
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 7.8e-59 230.7 159 75.5
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.3e-58 229.9 159 77.4
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 5.1e-58 228.0 159 76.7
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 6.6e-58 227.6 159 74.2
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 6.6e-58 227.6 159 75.5
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 8.7e-58 227.3 159 75.5
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 8.7e-58 227.3 159 75.5
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.1e-57 226.9 159 74.2
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.5e-57 226.5 159 75.5
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.9e-57 226.1 159 76.1
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 1.9e-57 226.1 159 73.6
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.9e-57 226.1 159 73.6
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 2.5e-57 225.7 159 76.1
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 9.6e-57 223.8 159 76.7
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 9.6e-57 223.8 159 74.2
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 1.3e-56 223.4 162 72.8
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 1.3e-56 223.4 159 73.6
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 2.1e-56 222.6 162 72.8
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 2.1e-56 222.6 159 74.2
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 2.1e-56 222.6 159 74.2
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 6.2e-56 221.1 159 74.8
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 1.8e-55 219.5 162 71.6
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 2.4e-55 219.2 162 73.5
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 4.0e-55 218.4 159 73.6
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 4.0e-55 218.4 159 73.6
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 5.3e-55 218.0 160 71.9
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 1.2e-54 216.9 159 73.0
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 1.2e-54 216.9 159 71.7
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 3.4e-54 215.3 159 71.7
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 3.4e-54 215.3 161 71.4
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 3.4e-54 215.3 159 73.0
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 4.5e-54 214.9 161 71.4
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 4.5e-54 214.9 161 70.8
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 4.5e-54 214.9 159 71.7
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 4.5e-54 214.9 161 71.4
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 5.8e-54 214.5 153 73.2
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 7.6e-54 214.2 159 70.4
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 9.9e-54 213.8 159 71.7
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 1.7e-53 213.0 159 68.6
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 1.7e-53 213.0 159 70.4
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 2.2e-53 212.6 162 69.8
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.2e-53 212.6 159 70.4
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 2.9e-53 212.2 159 69.8
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.9e-53 212.2 159 69.8
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 3.8e-53 211.8 159 71.7
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 3.8e-53 211.8 159 67.9
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 3.8e-53 211.8 162 72.2
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 4.9e-53 211.5 159 71.7
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.4e-53 211.1 159 71.1
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 8.4e-53 210.7 158 69.0
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 8.4e-53 210.7 162 68.5
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 8.4e-53 210.7 159 69.2
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 8.4e-53 210.7 159 68.6
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 1.4e-52 209.9 159 69.2
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 1.9e-52 209.5 162 71.6
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 3.2e-52 208.8 159 67.3
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 3.2e-52 208.8 161 70.2
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 3.2e-52 208.8 159 69.2
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 4.2e-52 208.4 162 69.8
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 4.2e-52 208.4 159 67.9
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 5.4e-52 208.0 159 67.3
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 7.1e-52 207.6 159 69.2
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 7.1e-52 207.6 162 68.5
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 9.3e-52 207.2 159 70.4
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 1.2e-51 206.8 162 70.4
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 1.2e-51 206.8 159 66.0
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 1.6e-51 206.5 159 68.6
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 1.6e-51 206.5 162 66.0
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 1.6e-51 206.5 160 71.2
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.6e-51 206.5 159 69.8
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 3.5e-51 205.3 159 69.2
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 3.5e-51 205.3 162 70.4
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 6.0e-51 204.5 158 65.8
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 6.0e-51 204.5 154 70.8
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 1.0e-50 203.8 162 70.4
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 1.8e-50 203.0 162 69.8
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 2.3e-50 202.6 147 72.1
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 2.3e-50 202.6 160 70.0
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 8.7e-50 200.7 161 68.9
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 8.7e-50 200.7 161 67.7
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 1.1e-49 200.3 156 67.3
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 3.3e-49 198.7 152 68.4
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 5.6e-49 198.0 162 66.7
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 7.4e-49 197.6 162 66.0
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.6e-48 196.4 162 66.7
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 4.8e-48 194.9 162 65.4
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 4.8e-48 194.9 161 67.7
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 1.1e-47 193.7 159 65.4
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 1.1e-47 193.7 162 65.4
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.8e-47 193.0 162 64.8
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 3.1e-47 192.2 162 64.8
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 4.0e-47 191.8 162 64.2
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 4.0e-47 191.8 162 64.2
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 5.3e-47 191.4 113 87.6
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 5.3e-47 191.4 162 64.2
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 9.0e-47 190.7 113 85.8
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 3.4e-46 188.7 162 63.6
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 4.5e-46 188.3 162 64.2
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 4.5e-46 188.3 159 64.8
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 1.7e-45 186.4 159 63.5
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.9e-45 185.7 140 71.4
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 3.8e-45 185.3 180 58.3
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 6.4e-45 184.5 162 61.7
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 6.4e-45 184.5 162 61.7
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 6.4e-45 184.5 162 61.7
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 6.4e-45 184.5 162 61.7
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 6.4e-45 184.5 162 61.7
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 8.4e-45 184.1 162 61.7
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 1.1e-44 183.7 200 53.0
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 3.5e-43 178.7 159 61.0
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 1.8e-42 176.4 159 59.7
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 1.1e-41 173.7 151 63.6
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 1.6e-40 169.9 140 62.1
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 2.8e-40 169.1 162 59.9
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 4.8e-40 168.3 158 56.3
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 2.0e-38 162.9 139 61.2
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 4.5e-38 161.8 159 58.5
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 4.9e-37 158.3 154 59.7
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 8.4e-37 157.5 160 50.0
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.5e-36 156.0 159 56.6
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 4.2e-36 155.2 160 51.9
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 7.1e-36 154.5 164 56.1
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 2.1e-35 152.9 116 71.6
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 1.8e-34 149.8 132 62.1
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 3.7e-32 142.1 147 53.1
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 1.2e-30 137.1 109 70.6
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.0e-30 136.3 140 57.9
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 4.5e-30 135.2 109 68.8
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 2.2e-29 132.9 89 83.1
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.9e-29 132.5 101 68.3
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 8.5e-29 131.0 109 68.8
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 8.5e-29 131.0 187 43.3
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 1.4e-28 130.2 162 50.0
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.5e-28 128.3 138 55.8
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 1.3e-26 123.6 126 61.1
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 6.9e-23 111.3 159 42.1
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 2.0e-22 109.8 162 46.3
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 7.7e-22 107.8 151 38.4
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.2e-21 106.3 90 67.8
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 3.8e-21 105.5 121 49.6
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 3.8e-21 105.5 121 49.6
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 2.5e-20 102.8 159 42.1
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 7.2e-20 101.3 132 47.0
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 5.7e-17 91.7 89 52.8
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 3.7e-16 89.0 82 59.8
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.1e-15 87.4 51 78.4
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 1.4e-15 87.0 67 65.7
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.4e-15 87.0 76 60.5
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 1.5e-14 83.6 104 53.8
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 2.6e-14 82.8 52 71.2
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 1.0e-13 80.9 52 78.8
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 2.9e-13 79.3 52 75.0
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 3.8e-13 79.0 124 45.2
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 5.0e-13 78.6 52 76.9
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 1.1e-12 77.4 52 75.0
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 1.1e-12 77.4 52 75.0
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 5.5e-12 75.1 70 62.9
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 2.1e-11 73.2 56 69.6
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.7e-11 72.8 108 42.6
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 8.8e-10 67.8 56 67.9
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.1e-07 60.8 78 48.7
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.3e-07 58.5 109 39.4
VMungo1383G0333 Vigna mungo HOM05D003667 ORTHO05D036049 2.6e-06 56.2 45 71.1
MD05G1212000 Malus domestica HOM05D003667 ORTHO05D246792 5.9e-06 55.1 41 63.4
FvH4_5g38702 Fragaria vesca HOM05D003667 ORTHO05D004397 7.7e-06 54.7 38 73.7


User provided reference genes

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