Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G004700 Carya illinoinensis HOM05D006569 ORTHO05D007515 0.0e+00 1788.9 1272 100.0
QL02p053824 Quercus lobata HOM05D006569 ORTHO05D007515 0.0e+00 1137.9 1257 72.6
MD09G1053400 Malus domestica HOM05D006569 ORTHO05D007515 1.1e-264 917.5 1251 54.4
Prupe.3G265200 Prunus persica HOM05D006569 ORTHO05D007515 4.6e-263 912.1 1264 60.5
Haze_14089 Corylus avellana HOM05D006569 ORTHO05D007515 2.3e-262 909.8 1042 68.1
Cfa007985 Carpinus fangiana HOM05D006569 ORTHO05D007515 1.1e-261 907.5 1058 67.7
FAN05G0252 Fragaria x ananassa HOM05D006569 ORTHO05D007515 8.2e-260 901.4 1260 48.3
FAN14G1478 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.2e-258 897.5 1262 58.0
FAN02G1154 Fragaria x ananassa HOM05D006569 ORTHO05D007515 8.2e-252 874.8 1267 61.6
Ciclev10013587m.g Citrus clementina HOM05D006569 ORTHO05D007515 7.9e-247 858.2 1203 57.4
CANSAT64G0455 Cannabis sativa HOM05D006569 ORTHO05D007515 6.3e-244 848.6 1267 50.4
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 1.8e-243 847.0 1211 53.8
GSVIVG01011442001 Vitis vinifera HOM05D006569 ORTHO05D007515 3.9e-238 829.3 1036 61.5
FAN09G2200 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.3e-237 826.2 1188 51.0
Potri.017G086000 Populus trichocarpa HOM05D006569 ORTHO05D007515 1.5e-234 817.4 1271 47.6
Dinv33774 Davidia involucrata HOM05D006569 ORTHO05D007515 1.9e-232 810.4 1038 59.3
Sabra17G0075800 Salix brachista HOM05D006569 ORTHO05D007515 1.0e-230 804.7 1054 46.1
Manes.01G092900 Manihot esculenta HOM05D006569 ORTHO05D007515 1.5e-224 784.3 1055 52.2
CSS0028247 Camellia sinensis var. sinensis HOM05D006569 ORTHO05D007515 8.8e-222 775.0 1038 49.4
Rhsim10G0036300 Rhododendron simsii HOM05D006569 ORTHO05D007515 7.5e-221 771.9 1059 48.9
Cpa.g.sc14.98 Carica papaya HOM05D006569 ORTHO05D007515 1.8e-214 750.7 1057 55.1
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 3.0e-214 750.0 969 50.5
RcHm_v2.0_Chr2g0167491 Rosa chinensis HOM05D006569 ORTHO05D007515 3.0e-214 750.0 1258 51.4
TWI60G0939 Tripterygium wilfordii HOM05D006569 ORTHO05D007515 5.7e-213 745.7 1054 46.8
Oeu010220.1 Olea europaea HOM05D006569 ORTHO05D007515 4.7e-207 726.1 1253 56.2
FvH4_6g48150 Fragaria vesca HOM05D006569 ORTHO05D007515 1.0e-206 724.9 1094 54.5
CsaV3_7G024320 Cucumis sativus L. HOM05D006569 ORTHO05D007515 2.6e-205 720.3 1212 49.1
MELO3C023650.2 Cucumis melo HOM05D006569 ORTHO05D007515 2.5e-200 703.7 1212 49.6
arahy.Tifrunner.gnm1.ann1.80L4ZA Arachis hypogaea HOM05D006569 ORTHO05D007515 1.7e-196 691.0 1032 43.0
ClCG09G010340 Citrullus lanatus HOM05D006569 ORTHO05D007515 2.5e-192 677.2 1023 56.6
Lalb_Chr15g0081471 Lupinus albus HOM05D006569 ORTHO05D007515 1.2e-191 674.9 999 45.7
Lju41C9T14 Lonicera japonica HOM05D006569 ORTHO05D007515 3.6e-191 673.3 781 54.0
Eucgr.I01955 Eucalyptus grandis HOM05D006569 ORTHO05D007515 1.5e-189 667.9 1033 43.7
Lj6g0009481 Lotus japonicus HOM05D006569 ORTHO05D007515 1.4e-182 644.8 1250 48.6
Cc07_g03540 Coffea canephora HOM05D006569 ORTHO05D007515 5.8e-181 639.4 1030 51.2
Duzib264G1306 Durio zibethinus HOM05D006569 ORTHO05D007515 1.4e-179 634.8 696 58.8
AL6G26150 Arabidopsis lyrata HOM05D006569 ORTHO05D007515 5.4e-179 632.9 1249 39.2
Carub.0006s1347 Capsella rubella HOM05D006569 ORTHO05D007515 6.0e-178 629.4 1251 38.2
Hund15592 Selenicereus undatus HOM05D006569 ORTHO05D007515 1.3e-177 628.2 987 44.6
AUR62018101 Chenopodium quinoa HOM05D006569 ORTHO05D007515 9.6e-176 622.1 1244 49.4
PGR004G0299 Punica granatum HOM05D006569 ORTHO05D007515 2.1e-175 620.9 1036 45.8
AT5G15280 Arabidopsis thaliana HOM05D006569 ORTHO05D007515 4.7e-175 619.8 1248 40.9
TPR.G33795 Trifolium pratense HOM05D006569 ORTHO05D007515 2.4e-174 617.5 1165 49.2
Sc10g0003480 Simmondsia chinensis HOM05D006569 ORTHO05D007515 6.0e-170 602.8 1050 45.2
Medtr3g053000 Medicago truncatula HOM05D006569 ORTHO05D007515 2.3e-169 600.9 1163 43.7
EL10Ac2g03001 Beta vulgaris HOM05D006569 ORTHO05D007515 5.6e-168 596.3 1253 42.5
Psat5g175080 Pisum sativum HOM05D006569 ORTHO05D007515 1.6e-167 594.7 1162 46.1
Aqoxy3G03442 Aquilegia oxysepala HOM05D006569 ORTHO05D007515 2.4e-166 590.9 742 50.8
DCAR_021661 Daucus carota HOM05D006569 ORTHO05D007515 4.4e-165 586.6 758 50.1
SGA_v2.0_scaffold236G43766 Striga asiatica HOM05D006569 ORTHO05D007515 2.4e-163 580.9 1230 40.2
Sp6g28790 Schrenkiella parvula HOM05D006569 ORTHO05D007515 4.2e-163 580.1 1240 37.4
Sed0017024 Sechium edule HOM05D006569 ORTHO05D007515 5.4e-163 579.7 1213 46.6
CARHR198030 Cardamine hirsuta HOM05D006569 ORTHO05D007515 3.5e-162 577.0 1247 40.3
THA.LOC104822352 Tarenaya hassleriana HOM05D006569 ORTHO05D007515 2.3e-161 574.3 878 40.0
Lsat_1_v5_gn_2_89461 Lactuca sativa HOM05D006569 ORTHO05D007515 3.9e-161 573.5 1232 42.2
Nitab4.5_0003653g0010 Nicotiana tabacum HOM05D006569 ORTHO05D007515 3.9e-161 573.5 761 40.9
PGSC0003DMG400025133 Solanum tuberosum HOM05D006569 ORTHO05D007515 6.6e-161 572.8 772 40.4
Thhalv10012473m.g Eutrema salsugineum HOM05D006569 ORTHO05D007515 1.1e-160 572.0 1213 37.1
SalBow6G2371 Salvia bowleyana HOM05D006569 ORTHO05D007515 1.1e-160 572.0 994 41.5
Nitab4.5_0000212g0030 Nicotiana tabacum HOM05D006569 ORTHO05D007515 5.6e-160 569.7 764 42.0
Solyc02g067200.4 Solanum lycopersicum HOM05D006569 ORTHO05D007515 5.6e-160 569.7 775 40.4
AUR62034434 Chenopodium quinoa HOM05D006569 ORTHO05D007515 3.6e-159 567.0 1031 47.1
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 4.8e-159 566.6 772 39.9
BcaNung03317 Brassica carinata HOM05D006569 ORTHO05D007515 1.4e-158 565.1 1182 37.3
Peaxi162Scf00011g00263 Petunia axillaris HOM05D006569 ORTHO05D007515 3.0e-153 547.4 774 39.4
CAN.G1103.13 Capsicum annuum HOM05D006569 ORTHO05D007515 5.3e-150 536.6 761 43.2
HanXRQChr07g0199321 Helianthus annuus HOM05D006569 ORTHO05D007515 1.2e-149 535.4 1367 36.2
ECA238G4289 Erigeron canadensis HOM05D006569 ORTHO05D007515 3.4e-149 533.9 1082 43.9
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 7.6e-149 532.7 1245 34.6
Ca_14754_v3 Cicer arietinum L. HOM05D006569 ORTHO05D007515 1.4e-147 528.5 1085 44.1
BraA02t05270Z Brassica rapa HOM05D006569 ORTHO05D007515 3.2e-147 527.3 1164 33.4
MSTRG.15471 Avicennia marina HOM05D006569 ORTHO05D007515 4.3e-144 516.9 1045 47.4
PSO832G0544 Papaver somniferum HOM05D006569 ORTHO05D007515 4.1e-142 510.4 760 46.7
Ah.10g031720 Amaranthus hybridus HOM05D006569 ORTHO05D007515 7.6e-141 506.1 960 39.5
PSO013G0141 Papaver somniferum HOM05D006569 ORTHO05D007515 1.3e-140 505.4 781 45.3
Glyma.18G093100 Glycine max HOM05D006569 ORTHO05D007515 1.6e-138 498.4 1163 40.9
BolC2t06696H Brassica oleracea HOM05D006569 ORTHO05D007515 3.5e-138 497.3 689 44.6
Aa31LG11G14260 Aethionema arabicum HOM05D006569 ORTHO05D007515 8.7e-137 492.7 1233 34.1
C02p07640 Brassica napus HOM05D006569 ORTHO05D007515 5.7e-136 490.0 689 44.0
BcaC03g13417 Brassica carinata HOM05D006569 ORTHO05D007515 7.4e-136 489.6 689 44.0
VMungo0540G0528 Vigna mungo HOM05D006569 ORTHO05D007515 1.6e-135 488.4 1164 44.6
FAN09G3888 Fragaria x ananassa HOM05D006569 ORTHO05D007515 7.9e-122 443.0 640 51.9
MBI05_g41591_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 5.9e-117 426.8 1012 36.6
Zm00001eb005280 Zea mays HOM05D006569 ORTHO05D007515 5.9e-109 400.2 1164 29.3
ATR1145G048 Amborella trichopoda HOM05D006569 ORTHO05D007515 1.3e-108 399.1 1165 50.8
COL.COLO4_10330 Corchorus olitorius HOM05D006569 ORTHO05D007515 9.1e-102 376.3 786 37.5
HPP92_012798 Vanilla planifolia HOM05D006569 ORTHO05D007515 2.5e-99 368.2 692 31.9
A02p02990 Brassica napus HOM05D006569 ORTHO05D007515 3.2e-99 367.9 713 39.6
MBI05_g10764_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 1.8e-97 362.1 795 31.2
CDE04G0154 Ceratophyllum demersum HOM05D006569 ORTHO05D007515 5.2e-97 360.5 608 32.7
QL02p057930 Quercus lobata HOM05D006569 ORTHO05D007515 4.5e-93 347.4 995 30.9
FvH4_6g47953 Fragaria vesca HOM05D006569 ORTHO05D007515 3.6e-90 337.8 353 64.9
QL93p0100_0341 Quercus lobata HOM05D006569 ORTHO05D007515 1.8e-86 325.5 520 41.3
QL08p010038 Quercus lobata HOM05D006569 ORTHO05D007515 8.6e-84 316.6 948 35.9
FAN05G1756 Fragaria x ananassa HOM05D006569 ORTHO05D007515 9.5e-83 313.2 346 63.3
FAN09G1632 Fragaria x ananassa HOM05D006569 ORTHO05D007515 9.5e-75 286.6 318 50.6
RcHm_v2.0_Chr2g0167581 Rosa chinensis HOM05D006569 ORTHO05D007515 2.1e-74 285.4 226 61.5
Phvul.006G046500 Phaseolus vulgaris HOM05D006569 ORTHO05D007515 1.1e-67 263.1 774 42.8
RcHm_v2.0_Chr2g0167571 Rosa chinensis HOM05D006569 ORTHO05D007515 6.6e-60 237.3 209 54.5
Thecc.04G085700 Theobroma cacao HOM05D006569 ORTHO05D007515 1.4e-57 229.6 209 54.1
FvH4_6g48880 Fragaria vesca HOM05D006569 ORTHO05D007515 1.1e-51 209.9 181 56.4
Glyma.18G108202 Glycine max HOM05D006569 ORTHO05D007515 1.1e-43 183.3 347 53.0
FAN14G0320 Fragaria x ananassa HOM05D006569 ORTHO05D007515 9.0e-41 173.7 209 50.2
FvH4_6g47954 Fragaria vesca HOM05D006569 ORTHO05D007515 5.8e-40 171.0 209 49.3
MBI05_g36424_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 1.5e-27 129.8 246 35.0
HanXRQChr05g0134551 Helianthus annuus HOM05D006569 ORTHO05D007515 3.1e-25 122.1 305 67.5
FAN09G4849 Fragaria x ananassa HOM05D006569 ORTHO05D007515 5.1e-20 104.8 143 49.7
FAN05G1232 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.3e-19 102.1 117 48.7
HPP92_012677 Vanilla planifolia HOM05D006569 ORTHO05D007515 3.3e-19 102.1 660 38.2
ATR0974G001 Amborella trichopoda HOM05D006569 ORTHO05D007515 3.7e-18 98.6 223 30.0
Medtr3g052970 Medicago truncatula HOM05D006569 ORTHO05D007515 8.2e-18 97.4 83 57.8
Glyma.08G319450 Glycine max HOM05D006569 ORTHO05D007515 1.4e-17 96.7 166 34.9
Thecc.04G085800 Theobroma cacao HOM05D006569 ORTHO05D007515 2.6e-16 92.4 112 50.0
SEGI_26115 Sequoiadendron giganteum HOM05D006819 ORTHO05D008763 6.5e-15 87.8 184 32.1
MBI05_g36420_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 4.2e-14 85.1 83 55.4
Os03g0168400 Oryza sativa ssp. japonica HOM05D006569 ORTHO05D007515 5.5e-14 84.7 136 36.8
HanXRQChr16g0524351 Helianthus annuus HOM05D006569 ORTHO05D007515 9.7e-11 73.9 79 39.2
AagrBONN_evm.TU.Sc2ySwM_362.261 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.8e-10 71.6 225 24.0
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 1.2e-08 67.0 235 25.5
Ca_09841_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 2.0e-08 66.2 242 24.4
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 2.0e-08 66.2 192 21.9
Nn8g39431 Nelumbo nucifera HOM05D006819 ORTHO05D008763 4.5e-08 65.1 159 28.9
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 1.0e-07 63.9 314 24.2
FAN14G2986 Fragaria x ananassa HOM05D006819 ORTHO05D008763 1.0e-07 63.9 150 27.3
TWI79G0708 Tripterygium wilfordii HOM05D005622 ORTHO05D002854 1.3e-07 63.5 186 22.6
CDE06G2834 Ceratophyllum demersum HOM05D002453 ORTHO05D002107 1.7e-07 63.2 209 24.4
MBI05_g36422_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 2.2e-07 62.8 52 50.0
Phvul.003G043300 Phaseolus vulgaris HOM05D005622 ORTHO05D002854 2.9e-07 62.4 181 23.8
Gohir.A09G173100 Gossypium hirsutum HOM05D005622 ORTHO05D002854 3.8e-07 62.0 161 23.6
AagrBONN_evm.TU.Sc2ySwM_228.1265 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.0e-07 61.6 257 21.4
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 5.0e-07 61.6 193 22.3
Haze_12341 Corylus avellana HOM05D005622 ORTHO05D002854 5.0e-07 61.6 222 23.9
VMungo1215G2844 Vigna mungo HOM05D005622 ORTHO05D002854 5.0e-07 61.6 232 23.3
BcaB08g36633 Brassica carinata HOM05D007340 ORTHO05D008979 6.5e-07 61.2 108 32.4
CARHR275790 Cardamine hirsuta HOM05D005764 ORTHO05D006600 6.5e-07 61.2 156 28.2
Ciclev10024942m.g Citrus clementina HOM05D006819 ORTHO05D008763 6.5e-07 61.2 232 22.8
Actinidia01760 Actinidia chinensis HOM05D006819 ORTHO05D008763 8.5e-07 60.8 168 26.2
CSS0036990 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 8.5e-07 60.8 173 24.3
Thecc.03G157100 Theobroma cacao HOM05D003975 ORTHO05D009762 1.1e-06 60.5 222 22.5
Nitab4.5_0005904g0050 Nicotiana tabacum HOM05D007830 ORTHO05D009947 1.4e-06 60.1 152 27.0
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 1.4e-06 60.1 266 22.2
CSS0040738 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 2.5e-06 59.3 173 23.7
TWI18G0691 Tripterygium wilfordii HOM05D006819 ORTHO05D008763 2.5e-06 59.3 150 26.7
BraA10t44135Z Brassica rapa HOM05D007340 ORTHO05D008979 4.2e-06 58.5 109 30.3
DCAR_025499 Daucus carota HOM05D006819 ORTHO05D008763 4.2e-06 58.5 165 27.3
BcaC08g43437 Brassica carinata HOM05D006819 ORTHO05D008763 5.5e-06 58.2 150 24.7
A10p20720 Brassica napus HOM05D007340 ORTHO05D008979 5.5e-06 58.2 109 31.2
MBI05_g36421_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 5.5e-06 58.2 45 64.4
Lalb_Chr22g0350931 Lupinus albus HOM05D006819 ORTHO05D008763 7.2e-06 57.8 139 29.5
Sp5g13220 Schrenkiella parvula HOM05D007409 ORTHO05D009264 7.2e-06 57.8 102 35.3
Sp6g25850 Schrenkiella parvula HOM05D007660 ORTHO05D009442 7.2e-06 57.8 218 22.9
Aqoxy3G03369 Aquilegia oxysepala HOM05D002453 ORTHO05D002107 9.4e-06 57.4 207 22.7
C06p08050 Brassica napus HOM05D006819 ORTHO05D008763 9.4e-06 57.4 150 24.7
BolC6t35888H Brassica oleracea HOM05D006819 ORTHO05D008763 9.4e-06 57.4 150 24.7


User provided reference genes

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