Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.3e-19 99.0 57 100.0
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 9.0e-18 92.8 56 91.1
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 1.5e-17 92.0 56 87.5
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 2.0e-17 91.7 56 89.3
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.8e-16 87.4 56 83.9
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.0e-16 87.0 56 83.9
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 1.1e-15 85.9 56 82.1
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.4e-15 85.5 56 83.9
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 1.9e-15 85.1 56 82.1
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 3.2e-15 84.3 56 82.1
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 4.2e-15 84.0 57 82.5
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.2e-15 84.0 56 82.1
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 5.5e-15 83.6 57 84.2
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 5.5e-15 83.6 57 84.2
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 9.3e-15 82.8 57 82.5
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 9.3e-15 82.8 55 81.8
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 9.3e-15 82.8 56 80.4
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.2e-14 82.4 56 82.1
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 4.6e-14 80.5 53 79.2
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 6.1e-14 80.1 60 78.3
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 6.1e-14 80.1 60 78.3
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 6.1e-14 80.1 53 81.1
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 1.4e-13 79.0 53 79.2
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.8e-13 78.6 60 78.3
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 3.0e-13 77.8 59 76.3
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 3.9e-13 77.4 57 78.9
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 6.7e-13 76.6 56 76.8
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 8.8e-13 76.3 53 73.6
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 8.8e-13 76.3 53 79.2
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 8.8e-13 76.3 57 77.2
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 8.8e-13 76.3 57 77.2
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.1e-12 75.9 59 78.0
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 1.1e-12 75.9 56 80.4
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 1.9e-12 75.1 55 78.2
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.9e-12 75.1 55 78.2
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 2.5e-12 74.7 55 80.0
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 4.3e-12 73.9 55 76.4
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 5.7e-12 73.6 56 80.4
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 5.7e-12 73.6 54 77.8
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 9.7e-12 72.8 54 68.5
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 9.7e-12 72.8 58 79.3
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 1.7e-11 72.0 62 69.4
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 1.7e-11 72.0 62 69.4
CiPaw.03G006700 Carya illinoinensis HOM05D001568 ORTHO05D004404 3.7e-11 70.9 55 76.4
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 3.7e-11 70.9 59 76.3
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 6.3e-11 70.1 55 72.7
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 8.2e-11 69.7 53 75.5
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.1e-10 69.3 60 66.7
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 5.3e-10 67.0 64 65.6
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 5.3e-10 67.0 64 65.6
Lsat_1_v5_gn_3_94821 Lactuca sativa HOM05D001568 ORTHO05D004404 9.1e-10 66.2 63 65.1
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.5e-09 65.5 64 62.5
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.0e-09 65.1 56 73.2
ECA246G2394 Erigeron canadensis HOM05D001568 ORTHO05D004404 2.6e-09 64.7 59 64.4
arahy.Tifrunner.gnm1.ann1.R2NHXZ Arachis hypogaea HOM05D001568 ORTHO05D004404 3.4e-09 64.3 64 64.1
arahy.Tifrunner.gnm1.ann1.IG7GQE Arachis hypogaea HOM05D001568 ORTHO05D004404 5.9e-09 63.5 64 65.6
HanXRQChr10g0283701 Helianthus annuus HOM05D001568 ORTHO05D004404 5.9e-09 63.5 63 61.9
Sed0003724 Sechium edule HOM05D001568 ORTHO05D004404 1.3e-08 62.4 60 61.7
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.7e-08 62.0 58 60.3
Lsat_1_v5_gn_4_175441 Lactuca sativa HOM05D001568 ORTHO05D004404 1.7e-08 62.0 57 64.9
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 2.2e-08 61.6 54 66.7
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 3.8e-08 60.8 59 59.3
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 3.8e-08 60.8 52 65.4
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 3.8e-08 60.8 52 65.4
Ah.10g037380 Amaranthus hybridus HOM05D001568 ORTHO05D004404 5.0e-08 60.5 59 67.8
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 5.0e-08 60.5 52 65.4
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.0e-08 60.5 52 65.4
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 5.0e-08 60.5 59 66.1
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 5.0e-08 60.5 52 65.4
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 6.5e-08 60.1 52 65.4
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 6.5e-08 60.1 53 66.0
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 6.5e-08 60.1 53 64.2
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 6.5e-08 60.1 52 63.5
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 6.5e-08 60.1 57 61.4
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 8.5e-08 59.7 54 63.0
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 8.5e-08 59.7 58 62.1
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 8.5e-08 59.7 52 67.3
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.1e-07 59.3 53 64.2
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.1e-07 59.3 52 63.5
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.1e-07 59.3 52 63.5
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 1.1e-07 59.3 52 63.5
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.4e-07 58.9 55 63.6
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.4e-07 58.9 55 63.6
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.4e-07 58.9 53 62.3
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.4e-07 58.9 52 65.4
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.9e-07 58.5 55 63.6
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.9e-07 58.5 51 66.7
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 1.9e-07 58.5 52 63.5
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 1.9e-07 58.5 52 65.4
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 2.5e-07 58.2 52 65.4
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 2.5e-07 58.2 53 62.3
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.5e-07 58.2 53 62.3
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.5e-07 58.2 53 62.3
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 2.5e-07 58.2 56 64.3
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 2.5e-07 58.2 52 65.4
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 3.2e-07 57.8 52 61.5
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 3.2e-07 57.8 52 65.4
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 4.2e-07 57.4 52 59.6
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 4.2e-07 57.4 52 61.5
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 4.2e-07 57.4 53 62.3
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 4.2e-07 57.4 52 63.5
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 4.2e-07 57.4 52 63.5
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 5.5e-07 57.0 54 61.1
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 5.5e-07 57.0 58 56.9
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 5.5e-07 57.0 53 62.3
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 5.5e-07 57.0 52 63.5
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 5.5e-07 57.0 52 65.4
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 5.5e-07 57.0 52 61.5
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 7.2e-07 56.6 52 61.5
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 7.2e-07 56.6 54 61.1
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 7.2e-07 56.6 52 63.5
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 9.4e-07 56.2 52 59.6
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 1.2e-06 55.8 54 64.8
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 1.2e-06 55.8 57 61.4
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 1.6e-06 55.5 53 60.4
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 1.6e-06 55.5 55 65.5
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 1.6e-06 55.5 57 63.2
MSTRG.23836 Avicennia marina HOM05D001568 ORTHO05D004404 2.1e-06 55.1 52 57.7
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 2.1e-06 55.1 54 59.3
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 2.1e-06 55.1 54 59.3
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 2.1e-06 55.1 58 56.9
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 2.1e-06 55.1 58 56.9
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 2.1e-06 55.1 55 61.8
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.7e-06 54.7 54 59.3
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.7e-06 54.7 54 59.3
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 3.6e-06 54.3 55 58.2
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 3.6e-06 54.3 54 59.3
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 3.6e-06 54.3 61 55.7
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 4.7e-06 53.9 57 57.9
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 4.7e-06 53.9 52 59.6
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 4.7e-06 53.9 54 59.3
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 4.7e-06 53.9 52 59.6
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 4.7e-06 53.9 54 57.4
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 4.7e-06 53.9 51 60.8
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 4.7e-06 53.9 53 58.5


User provided reference genes

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