Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 7.5e-192 673.7 344 100.0
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 3.3e-163 578.6 347 85.3
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.6e-162 576.2 347 84.7
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 2.1e-157 559.3 348 81.6
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 2.5e-155 552.4 348 79.0
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 9.6e-155 550.4 347 77.8
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 4.0e-153 545.0 345 78.6
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 4.0e-153 545.0 344 77.9
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 1.5e-152 543.1 344 79.7
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 3.4e-152 542.0 348 77.9
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 9.9e-152 540.4 347 77.5
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.3e-151 540.0 336 80.7
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 6.4e-151 537.7 348 78.7
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.4e-150 536.6 340 76.8
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.2e-150 535.4 340 75.3
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 4.2e-150 535.0 344 77.3
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.6e-149 533.1 348 77.0
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 2.1e-149 532.7 340 77.1
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 2.7e-149 532.3 347 77.2
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 7.8e-149 530.8 338 77.2
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 1.3e-148 530.0 344 77.3
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.3e-148 530.0 356 73.6
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.7e-148 529.6 341 76.8
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 2.3e-148 529.3 347 75.2
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 6.6e-148 527.7 349 76.2
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 6.6e-148 527.7 348 74.4
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 1.9e-147 526.2 347 77.5
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 1.9e-147 526.2 349 74.5
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 3.3e-147 525.4 347 76.9
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 4.3e-147 525.0 348 75.6
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 2.1e-146 522.7 348 74.4
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 8.1e-146 520.8 349 77.4
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 2.4e-145 519.2 344 73.5
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 1.5e-144 516.5 340 78.5
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 7.6e-144 514.2 345 73.6
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 7.6e-144 514.2 348 75.9
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.7e-143 513.1 345 75.4
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 2.9e-143 512.3 346 74.3
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 4.9e-143 511.5 343 73.5
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 6.4e-143 511.1 338 73.7
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 1.1e-142 510.4 348 73.0
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 1.4e-142 510.0 341 75.4
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 4.2e-142 508.4 336 72.0
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 7.1e-142 507.7 347 72.6
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.3e-142 507.3 344 75.3
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 2.7e-141 505.8 344 73.8
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.3e-140 503.4 339 74.3
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 1.7e-140 503.1 349 73.4
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 1.7e-140 503.1 346 71.4
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 1.7e-140 503.1 347 72.0
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 8.7e-140 500.7 340 74.7
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.1e-139 500.4 344 75.0
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.5e-139 499.2 344 74.4
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 2.5e-139 499.2 339 75.8
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 4.3e-139 498.4 346 71.4
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 6.2e-138 494.6 347 71.2
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 8.1e-138 494.2 344 70.6
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 2.4e-137 492.7 345 71.3
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 3.1e-137 492.3 353 70.5
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 4.0e-137 491.9 365 68.5
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 5.3e-137 491.5 344 73.3
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 6.9e-137 491.1 346 74.6
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 9.0e-137 490.7 338 71.6
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 1.2e-136 490.3 341 71.8
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 2.0e-136 489.6 345 71.0
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 2.6e-136 489.2 345 73.6
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 2.6e-136 489.2 349 72.2
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 2.6e-136 489.2 328 73.5
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.3e-135 486.9 344 73.0
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.2e-135 486.1 338 71.3
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.9e-135 485.7 338 71.3
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.8e-135 485.3 339 72.9
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 1.9e-134 483.0 349 69.6
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 3.2e-134 482.3 344 70.9
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 4.2e-134 481.9 344 71.8
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 5.4e-134 481.5 340 71.8
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 7.1e-134 481.1 346 72.0
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 2.1e-133 479.6 344 69.8
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 4.6e-133 478.4 343 71.1
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 4.6e-133 478.4 349 71.1
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.3e-132 476.9 343 71.1
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.8e-132 476.5 305 79.0
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 2.3e-132 476.1 346 68.5
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 3.0e-132 475.7 344 71.8
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 1.1e-131 473.8 345 68.7
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 1.1e-131 473.8 446 58.5
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 1.5e-131 473.4 349 71.6
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 4.3e-131 471.9 347 70.6
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 9.6e-131 470.7 344 69.2
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 1.1e-129 467.2 347 70.0
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 1.4e-129 466.8 347 70.0
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 1.8e-129 466.5 338 68.3
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 4.0e-129 465.3 347 69.5
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 6.9e-129 464.5 347 69.7
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 9.0e-129 464.2 342 68.1
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 5.8e-128 461.5 344 68.3
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 7.1e-126 454.5 341 68.6
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 2.1e-125 453.0 344 67.7
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.1e-125 453.0 345 66.4
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 7.9e-125 451.1 339 65.8
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 1.3e-124 450.3 352 66.5
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 2.3e-124 449.5 342 64.3
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 3.9e-124 448.7 339 65.8
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 1.5e-123 446.8 341 67.7
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 4.3e-123 445.3 340 65.9
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 4.3e-123 445.3 347 67.1
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 9.6e-123 444.1 341 64.8
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.6e-122 443.4 351 66.4
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 2.1e-122 443.0 338 65.7
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.4e-121 439.5 345 63.8
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 6.9e-121 438.0 344 66.6
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 2.6e-120 436.0 302 73.8
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.0e-119 434.1 359 63.0
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 2.2e-119 433.0 351 65.2
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 2.9e-119 432.6 270 81.1
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 2.9e-119 432.6 351 63.8
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 3.8e-119 432.2 349 65.9
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 1.4e-118 430.3 344 64.5
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 5.5e-118 428.3 347 60.2
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 1.2e-117 427.2 293 74.7
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.6e-117 426.8 340 60.9
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 2.7e-117 426.0 340 62.1
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 6.1e-117 424.9 348 59.5
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 7.4e-115 417.9 337 60.2
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 3.7e-114 415.6 345 59.1
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 5.3e-113 411.8 289 72.0
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.2e-112 410.6 339 62.2
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 3.4e-112 409.1 343 60.1
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 2.2e-111 406.4 291 73.5
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 2.1e-109 399.8 423 54.6
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 3.0e-108 396.0 347 59.7
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 5.7e-107 391.7 350 58.3
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 2.8e-106 389.4 335 58.8
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.5e-104 383.6 359 59.9
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 1.0e-103 380.9 294 67.0
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 2.1e-101 373.2 245 81.2
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 2.2e-98 363.2 294 63.6
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 6.5e-95 351.7 244 73.0
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 1.9e-94 350.1 296 64.2
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.2e-92 342.0 240 73.3
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 3.3e-91 339.3 244 70.1
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 6.3e-90 335.1 282 62.4
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 4.1e-89 332.4 338 48.2
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 4.1e-89 332.4 223 78.0
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 7.0e-89 331.6 245 70.2
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 4.5e-88 328.9 287 61.7
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 2.1e-85 320.1 336 45.8
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 3.0e-84 316.2 276 60.9
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 3.0e-84 316.2 187 83.4
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 6.8e-84 315.1 336 49.4
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.0e-83 313.5 349 52.1
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 3.1e-81 306.2 236 65.3
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 2.5e-78 296.6 236 66.1
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 3.2e-78 296.2 335 51.3
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 1.2e-77 294.3 339 44.0
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 2.0e-75 287.0 276 52.5
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 4.4e-75 285.8 240 61.7
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.2e-72 277.7 276 51.4
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.2e-67 261.2 250 52.4
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 1.5e-67 260.8 270 52.2
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 9.2e-65 251.5 145 81.4
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.4e-57 227.6 130 82.3
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.9e-52 208.4 140 72.1
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 6.2e-45 185.7 102 85.3
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.1e-44 183.3 115 79.1
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.8e-43 179.1 112 78.6
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 9.9e-43 178.3 117 78.6
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 3.5e-40 169.9 134 64.2
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 5.8e-27 125.9 73 78.1
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 7.1e-25 119.0 338 27.5
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 2.8e-21 107.1 145 35.9
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 5.3e-20 102.8 58 74.1
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.6e-16 91.3 54 77.8
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 1.4e-12 78.2 140 37.9
Haze_14102 Corylus avellana HOM05D004071 ORTHO05D004501 2.4e-12 77.4 75 65.3
Cre02.g099650 Chlamydomonas reinhardtii HOM05D004071 ORTHO05D004501 9.0e-12 75.5 217 24.9
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 6.5e-10 69.3 103 39.8
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 1.5e-06 58.2 45 64.4


User provided reference genes

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