Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 2.4e-56 221.9 106 100.0
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 2.6e-42 175.3 109 79.8
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 5.4e-40 167.5 106 74.5
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 2.0e-39 165.6 106 75.5
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 4.3e-37 157.9 110 70.0
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 5.6e-37 157.5 110 68.2
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 1.8e-35 152.5 111 70.3
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 2.0e-34 149.1 108 67.6
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 2.0e-34 149.1 108 67.6
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 2.0e-34 149.1 108 68.5
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 9.8e-34 146.7 110 70.0
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 9.8e-34 146.7 110 70.0
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 9.8e-34 146.7 110 70.0
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 9.8e-34 146.7 110 65.5
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.3e-33 146.4 111 62.2
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 1.7e-33 146.0 112 66.1
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 1.7e-33 146.0 107 68.2
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.7e-33 146.0 110 62.7
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 2.2e-33 145.6 107 65.4
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 2.2e-33 145.6 109 66.1
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 3.7e-33 144.8 109 67.0
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 3.7e-33 144.8 110 64.5
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 4.9e-33 144.4 112 64.3
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 4.9e-33 144.4 112 64.3
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 6.4e-33 144.1 110 65.5
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 8.3e-33 143.7 111 63.1
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 1.8e-32 142.5 110 62.7
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 1.8e-32 142.5 109 62.4
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 3.2e-32 141.7 110 65.5
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 3.2e-32 141.7 111 63.1
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 4.1e-32 141.4 110 65.5
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 7.0e-32 140.6 122 61.5
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 1.6e-31 139.4 107 63.6
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 1.6e-31 139.4 112 61.6
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.5e-31 138.3 109 66.1
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.5e-31 138.3 109 66.1
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 4.6e-31 137.9 109 63.3
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 4.6e-31 137.9 109 63.3
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 5.9e-31 137.5 107 66.4
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 1.3e-30 136.3 110 63.6
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 3.9e-30 134.8 120 63.3
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 5.0e-30 134.4 111 60.4
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.5e-29 132.9 108 64.8
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 1.9e-29 132.5 107 64.5
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 3.3e-29 131.7 100 64.0
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.3e-29 131.7 108 63.9
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 5.6e-29 131.0 110 56.4
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 5.6e-29 131.0 111 60.4
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 7.3e-29 130.6 106 59.4
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 7.3e-29 130.6 108 63.0
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 9.5e-29 130.2 110 61.8
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 1.2e-28 129.8 104 63.5
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.2e-28 129.8 110 61.8
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 1.2e-28 129.8 110 60.9
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 2.1e-28 129.0 98 62.2
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 3.6e-28 128.3 110 59.1
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 6.2e-28 127.5 107 61.7
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 8.0e-28 127.1 111 61.3
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 1.4e-27 126.3 109 58.7
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 4.0e-27 124.8 107 60.7
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 5.2e-27 124.4 108 60.2
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 6.8e-27 124.0 114 60.5
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 6.8e-27 124.0 116 57.8
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 8.9e-27 123.6 110 60.0
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 8.9e-27 123.6 110 60.0
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 8.9e-27 123.6 98 62.2
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 8.9e-27 123.6 96 58.3
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 1.5e-26 122.9 123 56.9
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 2.0e-26 122.5 104 57.7
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 2.0e-26 122.5 109 58.7
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 2.6e-26 122.1 110 57.3
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 5.8e-26 120.9 109 56.9
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 7.5e-26 120.6 112 58.0
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.3e-25 119.8 109 56.0
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 2.9e-25 118.6 106 56.6
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 3.7e-25 118.2 106 50.9
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 6.4e-25 117.5 92 62.0
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 8.3e-25 117.1 90 63.3
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 1.1e-24 116.7 89 62.9
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 2.4e-24 115.5 107 57.0
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 5.4e-24 114.4 86 69.8
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 5.4e-24 114.4 113 54.0
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 9.2e-24 113.6 106 50.9
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 9.2e-24 113.6 91 61.5
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 6.0e-23 110.9 123 55.3
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.7e-22 109.4 112 47.3
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 3.0e-22 108.6 114 54.4
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 3.9e-22 108.2 95 53.7
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 8.6e-22 107.1 106 50.9
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 8.6e-22 107.1 106 50.9
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 1.5e-21 106.3 106 50.0
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 1.9e-21 105.9 107 52.3
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 2.5e-21 105.5 106 50.0
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 2.5e-21 105.5 115 47.8
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 2.5e-21 105.5 108 51.9
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 3.3e-21 105.1 106 49.1
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 3.3e-21 105.1 99 59.6
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 3.3e-21 105.1 113 47.8
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 9.5e-21 103.6 104 50.0
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.6e-20 102.8 104 49.0
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.6e-20 102.8 116 46.6
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 2.1e-20 102.4 106 49.1
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.1e-20 102.4 116 46.6
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 2.1e-20 102.4 112 47.3
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 2.8e-20 102.1 98 54.1
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 3.6e-20 101.7 102 50.0
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 4.7e-20 101.3 109 49.5
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 8.1e-20 100.5 106 50.0
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 1.1e-19 100.1 98 54.1
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.4e-19 99.8 111 49.5
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 1.8e-19 99.4 116 44.8
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 5.2e-19 97.8 116 44.8
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 5.2e-19 97.8 107 48.6
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 5.2e-19 97.8 116 44.0
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 5.2e-19 97.8 107 50.5
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 8.9e-19 97.1 107 48.6
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 8.9e-19 97.1 107 48.6
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 2.0e-18 95.9 110 47.3
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 5.8e-18 94.4 97 45.4
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 5.8e-18 94.4 103 44.7
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 1.7e-17 92.8 107 46.7
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 1.7e-17 92.8 101 52.5
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 2.2e-17 92.4 107 46.7
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 2.2e-17 92.4 107 46.7
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 2.2e-17 92.4 111 45.9
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 3.7e-17 91.7 78 53.8
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 3.7e-17 91.7 110 46.4
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.4e-16 89.7 106 46.2
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 1.9e-16 89.4 65 60.0
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 7.1e-16 87.4 94 46.8
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 7.1e-16 87.4 112 45.5
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 7.1e-16 87.4 91 48.4
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.2e-15 86.7 106 44.3
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 2.7e-15 85.5 89 51.7
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 2.3e-14 82.4 107 41.1
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 3.0e-14 82.0 100 51.0
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 2.5e-13 79.0 112 41.1
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 9.5e-13 77.0 97 44.3
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 1.6e-12 76.3 103 42.7
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 3.6e-12 75.1 78 52.6
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 4.0e-11 71.6 95 38.9
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 8.9e-11 70.5 107 44.9
MBI19_g06152_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 2.0e-10 69.3 106 40.6
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 3.4e-10 68.6 92 44.6
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 3.4e-10 68.6 118 40.7
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 1.3e-09 66.6 108 39.8


User provided reference genes

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