Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 2.3e-176 622.1 309 100.0
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 3.5e-108 395.6 266 75.6
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 3.0e-107 392.5 242 80.6
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 2.9e-102 375.9 313 62.9
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 1.3e-94 350.5 318 57.5
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 1.7e-94 350.1 320 58.8
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 1.6e-92 343.6 268 67.2
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 3.9e-91 339.0 262 67.9
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 6.7e-91 338.2 257 68.5
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 1.3e-89 334.0 212 76.9
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 2.8e-89 332.8 257 67.3
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 6.3e-89 331.6 258 68.6
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 1.4e-88 330.5 262 66.0
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 2.4e-88 329.7 257 68.9
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 9.0e-88 327.8 260 65.0
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 7.7e-87 324.7 262 64.5
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 1.0e-86 324.3 266 65.4
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.8e-86 322.4 265 64.2
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 3.8e-86 322.4 214 73.4
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 5.0e-86 322.0 256 66.4
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 6.5e-86 321.6 257 65.0
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 8.5e-86 321.2 290 60.0
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 8.5e-86 321.2 310 56.1
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 2.5e-85 319.7 292 59.2
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 2.5e-85 319.7 292 59.2
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.2e-84 317.4 267 63.3
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 3.6e-84 315.8 267 62.9
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 4.6e-84 315.5 247 66.4
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 7.9e-84 314.7 257 63.8
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 1.4e-83 313.9 251 64.5
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 1.8e-83 313.5 312 54.5
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 1.8e-83 313.5 301 57.1
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 2.3e-83 313.2 207 76.8
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 2.3e-83 313.2 214 72.4
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 2.3e-83 313.2 273 60.8
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 3.9e-83 312.4 312 54.5
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 3.9e-83 312.4 257 64.2
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 6.7e-83 311.6 211 72.5
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 2.5e-82 309.7 254 62.2
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 7.4e-82 308.1 214 73.4
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.7e-81 307.0 232 65.9
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 1.7e-81 307.0 256 62.5
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 2.2e-81 306.6 202 74.3
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 2.8e-81 306.2 254 61.4
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 3.7e-81 305.8 207 73.4
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 4.8e-81 305.4 256 62.1
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 6.3e-81 305.1 254 62.6
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 6.3e-81 305.1 254 61.4
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 8.2e-81 304.7 212 72.6
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 1.4e-80 303.9 310 53.9
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 2.4e-80 303.1 237 65.4
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 2.4e-80 303.1 228 66.7
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 6.9e-80 301.6 207 71.0
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 6.9e-80 301.6 216 70.8
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.2e-79 300.8 273 58.2
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 1.5e-79 300.4 300 59.0
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.0e-79 300.1 257 60.7
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 2.0e-79 300.1 214 69.6
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 3.4e-79 299.3 258 60.5
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 4.5e-79 298.9 212 70.8
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 4.5e-79 298.9 219 70.3
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.9e-79 298.5 257 60.3
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.0e-78 297.7 240 64.6
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 1.0e-78 297.7 255 60.0
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 1.7e-78 297.0 195 74.4
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 1.7e-78 297.0 195 74.4
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 2.9e-78 296.2 197 71.6
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 3.8e-78 295.8 271 56.8
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 5.0e-78 295.4 195 73.8
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 5.0e-78 295.4 252 62.3
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 5.0e-78 295.4 224 66.5
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 8.5e-78 294.7 222 68.0
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 1.9e-77 293.5 234 62.8
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 3.2e-77 292.7 194 72.7
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 4.2e-77 292.4 210 69.5
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 5.5e-77 292.0 207 72.0
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 7.2e-77 291.6 310 52.6
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 9.4e-77 291.2 208 68.3
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 2.1e-76 290.0 184 73.9
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 2.1e-76 290.0 223 66.4
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 2.1e-76 290.0 200 72.0
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 2.7e-76 289.7 195 72.3
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 1.0e-75 287.7 205 71.7
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 1.4e-75 287.3 241 62.7
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 1.8e-75 287.0 184 72.8
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 6.7e-75 285.0 216 67.6
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 8.8e-75 284.6 194 73.2
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 8.8e-75 284.6 222 64.4
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 1.5e-74 283.9 211 65.4
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.5e-74 283.9 216 64.8
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 2.0e-74 283.5 213 68.5
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 5.7e-74 282.0 216 64.4
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.3e-73 280.8 199 71.4
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 1.3e-73 280.8 215 64.2
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 1.7e-73 280.4 201 72.6
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 8.2e-73 278.1 201 70.6
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.4e-72 277.3 194 69.1
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 3.1e-72 276.2 173 75.1
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 5.3e-72 275.4 196 69.9
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 1.2e-71 274.2 194 72.2
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.6e-71 273.9 223 63.7
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 2.6e-71 273.1 217 65.0
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 5.9e-71 271.9 238 59.7
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 7.7e-71 271.6 217 65.0
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 5.0e-70 268.9 210 63.3
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 5.5e-69 265.4 208 66.8
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 6.1e-68 261.9 187 69.0
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 1.8e-67 260.4 202 65.3
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 8.8e-67 258.1 167 73.1
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 3.8e-62 242.7 203 59.1
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 8.5e-62 241.5 201 63.7
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 7.2e-61 238.4 160 68.8
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 2.3e-59 233.4 183 62.3
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.8e-56 223.8 133 76.7
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 2.4e-56 223.4 159 72.3
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 2.4e-56 223.4 174 61.5
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 2.4e-56 223.4 188 63.3
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 1.2e-55 221.1 155 71.6
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 1.7e-54 217.2 205 57.1
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 1.5e-53 214.2 188 59.6
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 4.0e-51 206.1 155 68.4
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 8.8e-51 204.9 174 62.6
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 4.1e-48 196.1 108 82.4
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.7e-46 190.7 259 47.1
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 9.5e-45 184.9 116 74.1
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 7.0e-40 168.7 92 84.8
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.0e-38 164.9 248 46.4
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 6.6e-38 162.2 98 77.6
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 1.0e-30 138.3 220 40.5
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 3.3e-29 133.3 149 45.6
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 4.7e-28 129.4 108 65.7
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 1.8e-27 127.5 133 45.9
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 7.5e-26 122.1 103 64.1
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 7.5e-26 122.1 103 64.1
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 2.2e-25 120.6 135 45.2
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 3.0e-22 110.2 107 57.0
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 6.6e-22 109.0 254 38.6
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 1.2e-20 104.8 98 58.2
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 1.9e-16 90.9 111 50.5
FAN23G0109 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.8e-11 74.3 129 43.4
QL09p042950 Quercus lobata HOM05D002053 ORTHO05D006480 1.8e-11 74.3 49 69.4
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 1.5e-10 71.2 43 72.1
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 1.9e-08 64.3 56 62.5
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 3.2e-08 63.5 38 73.7
FvH4_1g24250 Fragaria vesca HOM05D017060 ORTHO05D046490 7.1e-08 62.4 96 49.0


User provided reference genes

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