Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.5e-228 795.8 401 100.0
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 1.5e-207 726.1 401 88.3
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 4.3e-207 724.5 401 88.0
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 7.4e-199 697.2 401 85.5
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 1.2e-196 689.9 401 84.3
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 2.0e-196 689.1 401 83.8
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 4.5e-196 688.0 401 84.5
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 7.6e-196 687.2 401 84.3
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 3.8e-195 684.9 401 83.5
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 8.4e-195 683.7 401 84.0
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 1.4e-194 682.9 401 83.5
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 9.3e-194 680.2 402 83.8
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 1.6e-193 679.5 400 85.2
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 2.1e-193 679.1 402 83.3
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 2.7e-193 678.7 397 83.6
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 2.7e-193 678.7 401 83.3
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 3.5e-193 678.3 402 83.3
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 1.0e-192 676.8 401 82.3
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 1.3e-192 676.4 401 83.5
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 2.3e-192 675.6 393 86.5
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 3.0e-192 675.2 401 82.3
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 5.1e-192 674.5 401 82.5
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 8.7e-192 673.7 401 83.3
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 1.1e-191 673.3 402 82.6
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 1.5e-191 672.9 401 81.8
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 1.9e-191 672.5 401 83.0
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 3.3e-191 671.8 401 82.5
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 4.3e-191 671.4 394 83.8
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 5.7e-191 671.0 401 81.0
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 7.4e-191 670.6 401 81.3
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 7.4e-191 670.6 401 81.8
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 1.3e-190 669.8 401 82.3
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 1.3e-190 669.8 401 82.8
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 1.6e-190 669.5 401 82.8
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.1e-190 669.1 402 82.3
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 1.4e-189 666.4 401 82.3
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 1.4e-189 666.4 425 77.9
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 1.8e-189 666.0 402 81.6
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 2.4e-189 665.6 402 82.3
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 3.1e-189 665.2 402 81.8
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 4.1e-189 664.8 398 80.9
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 6.9e-189 664.1 401 83.0
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 2.0e-188 662.5 402 80.6
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 2.0e-188 662.5 402 80.6
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 3.4e-188 661.8 401 80.8
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 7.6e-188 660.6 401 81.5
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 7.6e-188 660.6 401 81.5
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.7e-187 659.4 406 81.0
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 1.1e-186 656.8 399 80.7
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 1.9e-186 656.0 402 80.1
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 1.9e-186 656.0 401 81.8
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 4.2e-186 654.8 401 81.0
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 4.6e-185 651.4 401 79.8
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 3.9e-184 648.3 419 76.1
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 8.7e-184 647.1 399 80.5
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 1.3e-182 643.3 402 78.9
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 2.2e-182 642.5 433 75.5
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 2.8e-182 642.1 402 79.4
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 3.7e-182 641.7 403 80.1
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 4.8e-182 641.3 399 79.9
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 8.2e-182 640.6 407 78.6
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 1.4e-181 639.8 396 78.0
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 1.8e-181 639.4 401 77.6
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 2.4e-181 639.0 401 77.8
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 3.1e-181 638.6 403 78.7
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 3.1e-181 638.6 402 78.9
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 3.1e-181 638.6 407 78.6
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 6.9e-181 637.5 361 86.1
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 1.2e-180 636.7 403 78.9
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 1.5e-180 636.3 402 78.6
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 2.6e-180 635.6 403 78.7
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 3.4e-180 635.2 390 82.6
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 4.5e-180 634.8 402 78.6
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 4.5e-180 634.8 399 78.9
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 7.7e-180 634.0 403 78.4
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 5.0e-179 631.3 399 78.4
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 8.5e-179 630.6 403 77.9
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 8.5e-179 630.6 410 76.8
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 1.9e-178 629.4 403 77.9
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 2.5e-178 629.0 399 78.2
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 2.5e-178 629.0 399 78.2
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 2.5e-178 629.0 410 77.3
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 5.5e-178 627.9 404 78.0
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 7.2e-178 627.5 402 77.9
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 2.1e-177 625.9 403 77.9
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 3.6e-177 625.2 403 77.4
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 3.6e-177 625.2 395 79.0
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 4.6e-177 624.8 403 77.9
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 6.1e-177 624.4 394 78.2
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 1.4e-176 623.2 402 77.4
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 1.8e-176 622.9 395 79.0
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 1.8e-176 622.9 395 78.5
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 2.3e-176 622.5 402 77.4
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 1.5e-175 619.8 367 83.1
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 2.0e-175 619.4 403 76.9
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 3.3e-175 618.6 391 78.8
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 5.7e-175 617.8 394 77.4
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 7.4e-175 617.5 393 77.1
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 2.4e-173 612.5 418 73.7
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 3.1e-173 612.1 399 75.7
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 3.4e-172 608.6 405 75.8
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 4.5e-172 608.2 497 64.4
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 1.0e-171 607.1 400 76.5
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 5.0e-171 604.7 453 71.1
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 5.5e-170 601.3 554 59.6
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 1.0e-168 597.0 395 74.4
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 7.4e-167 590.9 354 83.1
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 1.7e-166 589.7 444 68.7
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 1.8e-165 586.3 443 68.6
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 3.1e-165 585.5 403 74.4
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 9.1e-165 583.9 362 79.0
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 1.4e-160 570.1 398 70.1
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 5.4e-149 531.6 329 82.1
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.6e-145 520.0 311 81.0
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 3.1e-141 505.8 292 82.9
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 4.1e-141 505.4 316 79.7
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 6.4e-134 481.5 316 76.6
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.0e-123 447.6 343 68.8
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 5.2e-120 435.3 391 56.3
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 1.3e-118 430.6 361 57.1
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 1.1e-117 427.6 356 59.3
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 1.2e-113 414.1 344 57.3
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 2.8e-113 412.9 260 79.2
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 9.3e-101 371.3 237 80.2
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 7.3e-98 361.7 357 51.0
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 3.8e-94 349.4 226 76.5
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 3.5e-84 316.2 284 52.8
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 3.9e-75 286.2 334 45.8
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 5.5e-69 265.8 364 40.9
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 2.0e-63 247.3 231 59.3
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 1.2e-60 238.0 351 40.5
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 2.1e-60 237.3 205 63.9
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 1.1e-58 231.5 171 70.8
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 6.9e-56 222.2 292 47.3
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.4e-43 181.4 98 90.8
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 3.1e-32 143.7 80 86.2
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 5.4e-32 142.9 82 85.4
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 3.5e-31 140.2 132 59.1
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 5.5e-29 132.9 81 79.0
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 9.2e-24 115.5 105 54.3
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 4.7e-20 103.2 65 72.3
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 3.0e-19 100.5 75 66.7
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 5.2e-11 73.2 56 67.9
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 3.7e-09 67.0 42 83.3
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 5.4e-08 63.2 32 87.5
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 1.6e-07 61.6 40 75.0
C09p57810 Brassica napus HOM05D006883 ORTHO05D008624 1.0e-06 58.9 264 24.6
BcaB08g36654 Brassica carinata HOM05D006883 ORTHO05D008624 6.6e-06 56.2 266 25.2
Lalb_Chr15g0087031 Lupinus albus HOM05D006883 ORTHO05D008624 8.6e-06 55.8 260 25.4


User provided reference genes

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