Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.6e-118 429.5 228 100.0
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 6.1e-81 304.7 253 70.0
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 7.9e-81 304.3 191 88.5
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.0e-80 303.9 191 86.4
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 2.2e-51 206.5 191 67.0
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 4.0e-48 195.7 190 64.2
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 1.0e-40 171.0 197 60.4
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 2.3e-40 169.9 197 60.4
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 4.7e-33 145.6 198 50.0
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 1.5e-31 140.6 187 54.5
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 5.7e-31 138.7 203 49.8
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 1.1e-29 134.4 194 49.0
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 1.6e-28 130.6 198 51.0
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 3.5e-28 129.4 194 49.5
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 5.0e-27 125.6 141 58.9
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 8.6e-27 124.8 196 50.5
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 9.5e-26 121.3 185 45.9
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 9.5e-26 121.3 168 51.8
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.2e-25 120.9 165 52.7
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 1.6e-25 120.6 179 46.4
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 2.8e-25 119.8 175 50.9
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 3.6e-25 119.4 191 45.5
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 4.7e-25 119.0 168 51.2
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 6.1e-25 118.6 168 51.2
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 8.0e-25 118.2 190 44.7
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 1.8e-24 117.1 174 43.1
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 2.3e-24 116.7 194 44.8
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 3.1e-24 116.3 181 45.3
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 4.0e-24 115.9 193 46.1
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 4.0e-24 115.9 195 46.7
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 5.2e-24 115.5 189 45.0
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 6.8e-24 115.2 186 43.0
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 8.9e-24 114.8 199 43.2
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 2.6e-23 113.2 190 45.3
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 4.4e-23 112.5 209 39.7
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 4.4e-23 112.5 193 44.6
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 9.8e-23 111.3 175 45.1
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 1.3e-22 110.9 162 44.4
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 1.3e-22 110.9 187 44.9
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 2.2e-22 110.2 159 45.3
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 6.4e-22 108.6 163 46.6
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 1.4e-21 107.5 186 45.2
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 1.4e-21 107.5 167 46.1
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.9e-21 107.1 211 40.8
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 1.9e-21 107.1 211 41.2
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 3.2e-21 106.3 213 40.4
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 4.1e-21 105.9 198 38.9
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 4.1e-21 105.9 179 45.3
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 7.0e-21 105.1 215 38.6
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 7.0e-21 105.1 184 45.1
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 9.2e-21 104.8 192 43.2
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 1.2e-20 104.4 122 52.5
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 2.0e-20 103.6 160 46.2
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 2.0e-20 103.6 180 46.7
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 3.5e-20 102.8 185 43.8
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.5e-20 102.8 165 44.2
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 4.6e-20 102.4 171 43.3
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 4.6e-20 102.4 160 43.1
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 6.0e-20 102.1 166 46.4
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 6.0e-20 102.1 160 43.1
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 6.0e-20 102.1 184 41.8
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 7.8e-20 101.7 192 39.6
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 1.0e-19 101.3 173 46.2
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.0e-19 101.3 161 41.6
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 1.0e-19 101.3 195 43.1
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 1.7e-19 100.5 183 41.0
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.3e-19 100.1 165 44.2
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 2.3e-19 100.1 165 44.2
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 3.0e-19 99.8 133 52.6
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 3.9e-19 99.4 173 44.5
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 3.9e-19 99.4 187 43.9
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 6.6e-19 98.6 204 40.2
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 8.6e-19 98.2 182 45.1
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 1.1e-18 97.8 204 38.2
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 1.1e-18 97.8 180 44.4
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 1.1e-18 97.8 180 44.4
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 1.1e-18 97.8 180 43.3
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.1e-18 97.8 178 42.7
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 1.1e-18 97.8 161 42.2
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 1.5e-18 97.4 179 41.9
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 4.3e-18 95.9 188 40.4
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 4.3e-18 95.9 200 38.0
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 4.3e-18 95.9 179 39.7
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 7.3e-18 95.1 184 43.5
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 1.2e-17 94.4 199 42.7
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 1.2e-17 94.4 199 39.7
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.2e-17 94.4 217 41.0
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 2.1e-17 93.6 158 39.9
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 2.1e-17 93.6 191 41.9
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 2.1e-17 93.6 176 42.0
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 6.2e-17 92.0 207 39.1
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 6.2e-17 92.0 207 39.1
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 6.2e-17 92.0 189 41.3
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 8.1e-17 91.7 176 44.9
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 8.1e-17 91.7 183 45.9
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 8.1e-17 91.7 146 45.2
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 1.8e-16 90.5 176 39.8
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 2.3e-16 90.1 192 40.6
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 5.2e-16 89.0 171 42.7
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 6.8e-16 88.6 89 61.8
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 8.9e-16 88.2 210 40.0
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 8.9e-16 88.2 164 41.5
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 2.0e-15 87.0 163 41.7
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.0e-15 87.0 189 38.1
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 2.6e-15 86.7 203 38.4
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 2.6e-15 86.7 198 42.4
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 4.4e-15 85.9 206 38.8
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 5.8e-15 85.5 182 37.4
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 1.3e-14 84.3 183 39.3
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 1.3e-14 84.3 180 38.3
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.3e-14 84.3 189 37.6
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 2.2e-14 83.6 191 38.2
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 2.9e-14 83.2 167 40.7
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 3.7e-14 82.8 194 38.7
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 6.4e-14 82.0 111 51.4
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 1.4e-13 80.9 188 37.8
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 2.4e-13 80.1 197 37.6
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 2.4e-13 80.1 183 37.7
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 3.2e-13 79.7 185 38.9
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 3.2e-13 79.7 141 44.0
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 7.1e-13 78.6 181 39.8
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 1.2e-12 77.8 57 71.9
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.7e-12 76.6 203 36.9
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 2.7e-12 76.6 206 35.0
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 2.7e-12 76.6 210 37.6
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 7.8e-12 75.1 203 36.5
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 7.8e-12 75.1 210 37.1
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 1.0e-11 74.7 78 55.1
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.0e-11 74.7 210 37.6
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 1.3e-11 74.3 159 34.6
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 2.3e-11 73.6 166 38.6
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 2.3e-11 73.6 193 38.3
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 2.3e-11 73.6 175 38.3
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 8.6e-11 71.6 152 38.2
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 1.5e-10 70.9 139 41.0
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 3.3e-10 69.7 204 32.4
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 3.3e-10 69.7 74 51.4
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 4.3e-10 69.3 188 32.4
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.8e-09 66.6 73 50.7
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 8.1e-09 65.1 61 60.7
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.1e-08 64.7 75 57.3
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 1.4e-08 64.3 78 53.8
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 1.4e-08 64.3 126 42.1
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 2.3e-08 63.5 81 48.1
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 3.1e-08 63.2 118 38.1
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 3.1e-08 63.2 75 56.0
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 5.2e-08 62.4 180 31.7
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 1.5e-07 60.8 150 39.3
Lj5C23T4 Lonicera japonica HOM05D004654 ORTHO05D005414 2.2e-06 57.0 43 62.8
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 6.4e-06 55.5 65 47.7


User provided reference genes

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