Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G259000 Carya illinoinensis HOM05D024768 ORTHO05D021044 6.3e-138 495.0 456 100.0
Sc05g0000860 Simmondsia chinensis HOM05D000162 ORTHO05D000090 1.8e-20 104.8 113 48.7
TWI75G1134 Tripterygium wilfordii HOM05D000162 ORTHO05D000090 1.8e-12 78.2 102 46.1
Ciclev10030383m.g Citrus clementina HOM05D000855 ORTHO05D000003 5.4e-12 76.6 124 38.7
GSVIVG01036273001 Vitis vinifera HOM05D000162 ORTHO05D000090 7.7e-11 72.8 75 49.3
MBI11_g34855_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 1.3e-10 72.0 84 45.2
MBI11_g20198_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 6.6e-10 69.7 109 39.4
Dinv06480 Davidia involucrata HOM05D000162 ORTHO05D000090 8.6e-10 69.3 73 46.6
Sabra02G0034700 Salix brachista HOM05D017826 ORTHO05D003288 3.3e-09 67.4 139 34.5
MD11G1122400 Malus domestica HOM05D000162 ORTHO05D000090 4.2e-09 67.0 86 39.5
MD11G1115600 Malus domestica HOM05D000162 ORTHO05D000090 7.2e-09 66.2 103 35.9
Duzib114G0499 Durio zibethinus HOM05D000162 ORTHO05D000090 9.5e-09 65.9 73 47.9
HanXRQChr07g0203521 Helianthus annuus HOM05D000162 ORTHO05D000090 1.2e-08 65.5 110 34.5
EL10Ac4g09824 Beta vulgaris HOM05D000162 ORTHO05D000090 1.6e-08 65.1 83 41.0
BcaB08g34233 Brassica carinata HOM05D000162 ORTHO05D000090 1.6e-08 65.1 82 42.7
Actinidia08438 Actinidia chinensis HOM05D000162 ORTHO05D000090 2.1e-08 64.7 102 37.3
Ciclev10026992m.g Citrus clementina HOM05D005622 ORTHO05D010954 2.8e-08 64.3 61 50.8
Gohir.D11G133900 Gossypium hirsutum HOM05D024768 ORTHO05D021044 2.8e-08 64.3 56 55.4
vmacro15413 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 2.8e-08 64.3 107 33.6
Hma1.2p1_0310F.1_g120960 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 3.6e-08 63.9 110 31.8
HanXRQChr07g0204921 Helianthus annuus HOM05D000162 ORTHO05D000090 4.7e-08 63.5 110 32.7
Hma1.2p1_0310F.1_g120980 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 4.7e-08 63.5 103 33.0
Prupe.6G087600 Prunus persica HOM05D000162 ORTHO05D000090 6.1e-08 63.2 103 35.9
QL04p064912 Quercus lobata HOM05D000162 ORTHO05D000090 6.1e-08 63.2 81 40.7
QL12p042932 Quercus lobata HOM05D000162 ORTHO05D000090 6.1e-08 63.2 61 52.5
ClCG09G021740 Citrullus lanatus HOM05D016535 ORTHO05D000090 1.4e-07 62.0 216 25.9
FAN21G3095 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.4e-07 62.0 107 32.7
HanXRQChr07g0204091 Helianthus annuus HOM05D000162 ORTHO05D000090 1.4e-07 62.0 106 34.0
Potri.013G149800 Populus trichocarpa HOM05D000162 ORTHO05D000090 1.4e-07 62.0 82 40.2
CARHR050170 Cardamine hirsuta HOM05D015660 ORTHO05D000090 1.8e-07 61.6 97 32.0
QL04p081370 Quercus lobata HOM05D000162 ORTHO05D000090 1.8e-07 61.6 39 71.8
CSS0041306 Camellia sinensis var. sinensis HOM05D000162 ORTHO05D000090 2.3e-07 61.2 103 33.0
MBI09_g06129_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 2.3e-07 61.2 105 37.1
FAN02G2649 Fragaria x ananassa HOM05D000162 ORTHO05D000090 3.0e-07 60.8 88 38.6
Manes.09G016633 Manihot esculenta HOM05D000162 ORTHO05D000090 3.0e-07 60.8 85 36.5
A09p62690 Brassica napus HOM05D000162 ORTHO05D000090 4.0e-07 60.5 77 40.3
C08p45770 Brassica napus HOM05D003784 ORTHO05D004345 4.0e-07 60.5 78 43.6
BolC8t52131H Brassica oleracea HOM05D003784 ORTHO05D004345 4.0e-07 60.5 78 43.6
HanXRQChr07g0203991 Helianthus annuus HOM05D000162 ORTHO05D000090 4.0e-07 60.5 110 31.8
Nn1g02624 Nelumbo nucifera HOM05D000162 ORTHO05D000090 4.0e-07 60.5 97 37.1
RcHm_v2.0_Chr5g0071481 Rosa chinensis HOM05D000162 ORTHO05D000090 4.0e-07 60.5 107 31.8
vmacro00539 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 4.0e-07 60.5 111 32.4
Sed0000918 Sechium edule HOM05D008619 ORTHO05D010307 5.2e-07 60.1 79 45.6
CANSAT80G1240 Cannabis sativa HOM05D000162 ORTHO05D000090 6.8e-07 59.7 120 30.8
CANSAT80G2501 Cannabis sativa HOM05D000162 ORTHO05D000090 6.8e-07 59.7 120 30.8
HanXRQChr09g0252881 Helianthus annuus HOM05D000162 ORTHO05D000090 6.8e-07 59.7 103 35.9
HanXRQChr14g0435461 Helianthus annuus HOM05D000162 ORTHO05D000090 6.8e-07 59.7 106 32.1
Hma1.2p1_1276F.1_g272140 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 6.8e-07 59.7 110 30.9
RcHm_v2.0_Chr5g0071941 Rosa chinensis HOM05D000162 ORTHO05D000090 6.8e-07 59.7 99 31.3
vmacro15544 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 6.8e-07 59.7 102 39.2
Ca_22522_v3 Cicer arietinum L. HOM05D002444 ORTHO05D009235 8.9e-07 59.3 99 34.3
FvH4_3g39940 Fragaria vesca HOM05D000162 ORTHO05D000090 8.9e-07 59.3 107 31.8
Prupe.6G086000 Prunus persica HOM05D000162 ORTHO05D000090 8.9e-07 59.3 103 35.9
vmacro08429 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 8.9e-07 59.3 82 37.8
RcHm_v2.0_Chr6g0289221 Rosa chinensis HOM05D000162 ORTHO05D000090 1.2e-06 58.9 37 67.6
BcaC07g41685 Brassica carinata HOM05D000162 ORTHO05D000090 1.5e-06 58.5 83 41.0
BolC8t52255H Brassica oleracea HOM05D000162 ORTHO05D000090 1.5e-06 58.5 83 41.0
BolC8t52279H Brassica oleracea HOM05D000162 ORTHO05D000090 1.5e-06 58.5 74 41.9
FAN11G3989 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.5e-06 58.5 106 32.1
Gohir.D10G136600 Gossypium hirsutum HOM05D000162 ORTHO05D000090 1.5e-06 58.5 71 39.4
Gorai.009G376400 Gossypium raimondii HOM05D000162 ORTHO05D000090 1.5e-06 58.5 71 40.8
Oeu031435.1 Olea europaea HOM05D000162 ORTHO05D000090 1.5e-06 58.5 73 41.1
CiPaw.08G119600 Carya illinoinensis HOM05D000162 ORTHO05D000090 2.0e-06 58.2 74 41.9
Ciclev10003153m.g Citrus clementina HOM05D000162 ORTHO05D000090 2.0e-06 58.2 111 36.0
ECA232G1497 Erigeron canadensis HOM05D000162 ORTHO05D000090 2.0e-06 58.2 110 35.5
FvH4_2g22260 Fragaria vesca HOM05D000162 ORTHO05D000090 2.0e-06 58.2 39 66.7
FAN24G2639 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.0e-06 58.2 39 66.7
FAN27G0396 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.0e-06 58.2 39 66.7
Glyma.13G235200 Glycine max HOM05D002986 ORTHO05D007611 2.0e-06 58.2 76 40.8
HanXRQChr07g0204971 Helianthus annuus HOM05D000162 ORTHO05D000090 2.0e-06 58.2 110 30.9
HanXRQChr07g0204981 Helianthus annuus HOM05D000162 ORTHO05D000090 2.0e-06 58.2 106 31.1
HanXRQChr10g0281361 Helianthus annuus HOM05D000162 ORTHO05D000090 2.0e-06 58.2 112 34.8
HanXRQChr10g0284831 Helianthus annuus HOM05D000162 ORTHO05D000090 2.0e-06 58.2 106 31.1
Manes.09G011620 Manihot esculenta HOM05D000162 ORTHO05D000090 2.0e-06 58.2 85 41.2
vmacro08416 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 2.0e-06 58.2 82 36.6
Gorai.011G151500 Gossypium raimondii HOM05D000162 ORTHO05D000090 2.6e-06 57.8 71 39.4
HanXRQChr11g0341941 Helianthus annuus HOM05D000162 ORTHO05D000090 2.6e-06 57.8 99 32.3
Sp3g20240 Schrenkiella parvula HOM05D000162 ORTHO05D000090 2.6e-06 57.8 77 40.3
Sed0014539 Sechium edule HOM05D008619 ORTHO05D000090 2.6e-06 57.8 186 46.2
FvH4_3g40130 Fragaria vesca HOM05D000162 ORTHO05D000090 3.4e-06 57.4 103 31.1
TPR.G35260 Trifolium pratense HOM05D000162 ORTHO05D000090 3.4e-06 57.4 96 33.3
vmacro08421 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 3.4e-06 57.4 82 37.8
Actinidia04473 Actinidia chinensis HOM05D000162 ORTHO05D000090 4.4e-06 57.0 82 40.2
ATR0580G328 Amborella trichopoda HOM05D000424 ORTHO05D000355 4.4e-06 57.0 127 27.6
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 4.4e-06 57.0 85 36.5
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 4.4e-06 57.0 103 31.1
HanXRQChr11g0346401 Helianthus annuus HOM05D002986 ORTHO05D007611 4.4e-06 57.0 77 40.3
Hma1.2p1_1798F.1_g302880 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 4.4e-06 57.0 105 29.5
Rhsim04G0181600 Rhododendron simsii HOM05D000162 ORTHO05D000090 4.4e-06 57.0 110 33.6
A08p32720 Brassica napus HOM05D000162 ORTHO05D000090 5.7e-06 56.6 83 37.3
A09p63670 Brassica napus HOM05D000162 ORTHO05D000090 5.7e-06 56.6 77 41.6
C08p15550 Brassica napus HOM05D000162 ORTHO05D000090 5.7e-06 56.6 78 39.7
C08p47160 Brassica napus HOM05D000162 ORTHO05D000090 5.7e-06 56.6 77 41.6
BolC8t49183H Brassica oleracea HOM05D000162 ORTHO05D000090 5.7e-06 56.6 78 39.7
BraA08t35195Z Brassica rapa HOM05D000162 ORTHO05D000090 5.7e-06 56.6 83 37.3
BraA09t41715Z Brassica rapa HOM05D000162 ORTHO05D000090 5.7e-06 56.6 77 41.6
CDE06G0674 Ceratophyllum demersum HOM05D000424 ORTHO05D000355 5.7e-06 56.6 129 25.6
Dinv41259 Davidia involucrata HOM05D000162 ORTHO05D000090 5.7e-06 56.6 106 30.2
Eucgr.K03302 Eucalyptus grandis HOM05D000162 ORTHO05D000090 5.7e-06 56.6 125 31.2
FAN25G0292 Fragaria x ananassa HOM05D000162 ORTHO05D000090 5.7e-06 56.6 78 41.0
Hma1.2p1_1798F.1_g302890 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 5.7e-06 56.6 110 30.9
MD11G1128400 Malus domestica HOM05D000162 ORTHO05D000090 5.7e-06 56.6 103 31.1
vmacro05074 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 5.7e-06 56.6 99 34.3
vmacro15514 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 5.7e-06 56.6 103 34.0
Haze_24551 Corylus avellana HOM05D000162 ORTHO05D000090 7.5e-06 56.2 39 69.2
Hma1.2p1_1076F.1_g254530 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 7.5e-06 56.2 104 29.8
Hma1.2p1_1276F.1_g272060 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 7.5e-06 56.2 110 30.0
Hma1.2p1_1276F.1_g272100 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 7.5e-06 56.2 110 30.9
Lsat_1_v5_gn_3_111261 Lactuca sativa HOM05D000162 ORTHO05D000090 7.5e-06 56.2 103 31.1
Oeu056521.1 Olea europaea HOM05D002986 ORTHO05D007611 7.5e-06 56.2 81 39.5
EL10Ac4g09382 Beta vulgaris HOM05D000162 ORTHO05D000090 9.8e-06 55.8 111 28.8
EL10Ac4g09388 Beta vulgaris HOM05D000162 ORTHO05D000090 9.8e-06 55.8 111 28.8
BolC8t52228H Brassica oleracea HOM05D000162 ORTHO05D000090 9.8e-06 55.8 85 36.5
FvH4_3g39890 Fragaria vesca HOM05D000162 ORTHO05D000090 9.8e-06 55.8 107 30.8
FAN07G1899 Fragaria x ananassa HOM05D000162 ORTHO05D000090 9.8e-06 55.8 103 32.0
HanXRQChr14g0435491 Helianthus annuus HOM05D000162 ORTHO05D000090 9.8e-06 55.8 110 30.0
vmacro15513 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 9.8e-06 55.8 103 34.0


User provided reference genes

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