Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G239400 Carya illinoinensis HOM05D003627 ORTHO05D004307 5.5e-25 116.7 54 100.0
CAN.G98.17 Capsicum annuum HOM05D003627 ORTHO05D004307 2.2e-13 78.2 44 75.0
Solyc08g067020.4 Solanum lycopersicum HOM05D003627 ORTHO05D004307 2.2e-13 78.2 44 75.0
Sopen08g020960 Solanum pennellii HOM05D003627 ORTHO05D004307 2.2e-13 78.2 44 75.0
Dinv11613 Davidia involucrata HOM05D003627 ORTHO05D004307 3.7e-13 77.4 44 75.0
PGSC0003DMG400029087 Solanum tuberosum HOM05D003627 ORTHO05D004307 8.3e-13 76.3 44 72.7
SGA_v2.0_scaffold22G09938 Striga asiatica HOM05D003627 ORTHO05D004307 8.3e-13 76.3 44 70.5
SGA_v2.0_scaffold18G08283 Striga asiatica HOM05D003627 ORTHO05D004307 1.4e-12 75.5 44 70.5
BcaC03g17902 Brassica carinata HOM05D003627 ORTHO05D004307 1.8e-12 75.1 44 70.5
A02p39740 Brassica napus HOM05D003627 ORTHO05D004307 1.8e-12 75.1 44 70.5
C02p59530 Brassica napus HOM05D003627 ORTHO05D004307 1.8e-12 75.1 44 70.5
BolC2t12016H Brassica oleracea HOM05D003627 ORTHO05D004307 1.8e-12 75.1 44 70.5
BraA02t08939Z Brassica rapa HOM05D003627 ORTHO05D004307 1.8e-12 75.1 44 70.5
Lj7A717G55 Lonicera japonica HOM05D003627 ORTHO05D004307 1.8e-12 75.1 43 74.4
Thhalv10005137m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 2.4e-12 74.7 44 70.5
AL6G37230 Arabidopsis lyrata HOM05D003627 ORTHO05D004307 3.2e-12 74.3 44 70.5
AT5G25450 Arabidopsis thaliana HOM05D003627 ORTHO05D004307 3.2e-12 74.3 44 70.5
Carub.0006s2330 Capsella rubella HOM05D003627 ORTHO05D004307 3.2e-12 74.3 44 70.5
MSTRG.11762 Avicennia marina HOM05D003627 ORTHO05D004307 5.4e-12 73.6 44 70.5
CANSAT78G1909 Cannabis sativa HOM05D003627 ORTHO05D004307 5.4e-12 73.6 44 68.2
Ciclev10009887m.g Citrus clementina HOM05D003627 ORTHO05D004307 5.4e-12 73.6 44 70.5
Duzib168G1482 Durio zibethinus HOM05D003627 ORTHO05D004307 5.4e-12 73.6 44 70.5
Hma1.2p1_0000F.1_g000840 Hydrangea macrophylla HOM05D003627 ORTHO05D004307 5.4e-12 73.6 43 72.1
Sed0001403 Sechium edule HOM05D003627 ORTHO05D004307 5.4e-12 73.6 44 70.5
Duzib150G1042 Durio zibethinus HOM05D003627 ORTHO05D004307 7.0e-12 73.2 44 70.5
Lsat_1_v5_gn_5_31481 Lactuca sativa HOM05D003627 ORTHO05D004307 7.0e-12 73.2 43 74.4
QL02p023157 Quercus lobata HOM05D003627 ORTHO05D004307 7.0e-12 73.2 44 70.5
Eucgr.C01792 Eucalyptus grandis HOM05D003627 ORTHO05D004307 9.2e-12 72.8 44 68.2
Oeu045199.1 Olea europaea HOM05D003627 ORTHO05D004307 1.2e-11 72.4 43 69.8
Potri.018G031400 Populus trichocarpa HOM05D003627 ORTHO05D004307 1.2e-11 72.4 44 70.5
Cpa.g.sc1755.1 Carica papaya HOM05D003627 ORTHO05D004307 1.6e-11 72.0 44 68.2
Gohir.A02G112400 Gossypium hirsutum HOM05D003627 ORTHO05D004307 1.6e-11 72.0 44 70.5
Rhsim02G0194100 Rhododendron simsii HOM05D003627 ORTHO05D004307 1.6e-11 72.0 44 68.2
SGA_v2.0_scaffold169G38619 Striga asiatica HOM05D003627 ORTHO05D004307 1.6e-11 72.0 44 65.9
Atru.chr7.2370 Acer truncatum HOM05D003627 ORTHO05D004307 2.0e-11 71.6 44 68.2
ClCG05G017090 Citrullus lanatus HOM05D003627 ORTHO05D004307 2.0e-11 71.6 44 65.9
Sed0003789 Sechium edule HOM05D003627 ORTHO05D004307 2.0e-11 71.6 44 65.9
Thecc.09G148600 Theobroma cacao HOM05D003627 ORTHO05D004307 2.0e-11 71.6 44 70.5
CiPaw.07G220400 Carya illinoinensis HOM05D003627 ORTHO05D004307 2.7e-11 71.2 44 68.2
CiPaw.08G013800 Carya illinoinensis HOM05D003627 ORTHO05D004307 2.7e-11 71.2 44 65.9
CsaV3_3G046570 Cucumis sativus L. HOM05D003627 ORTHO05D004307 2.7e-11 71.2 44 65.9
Nn2g11929 Nelumbo nucifera HOM05D003627 ORTHO05D004307 2.7e-11 71.2 44 70.5
Potri.006G250000 Populus trichocarpa HOM05D003627 ORTHO05D004307 2.7e-11 71.2 44 65.9
PGR044G1161 Punica granatum HOM05D003627 ORTHO05D004307 2.7e-11 71.2 44 68.2
Actinidia14624 Actinidia chinensis HOM05D003627 ORTHO05D004307 3.5e-11 70.9 44 65.9
MELO3C003682.2 Cucumis melo HOM05D003627 ORTHO05D004307 3.5e-11 70.9 44 63.6
Migut.A00309 Erythranthe guttata HOM05D003627 ORTHO05D004307 3.5e-11 70.9 44 63.6
Migut.E01481 Erythranthe guttata HOM05D003627 ORTHO05D004307 3.5e-11 70.9 44 65.9
Prupe.1G472700 Prunus persica HOM05D003627 ORTHO05D004307 3.5e-11 70.9 44 68.2
PGR044G1771 Punica granatum HOM05D003627 ORTHO05D004307 3.5e-11 70.9 44 68.2
TWI32G0136 Tripterygium wilfordii HOM05D003627 ORTHO05D004307 3.5e-11 70.9 44 68.2
TAR636G0318 Trochodendron aralioides HOM05D003627 ORTHO05D004307 3.5e-11 70.9 44 65.9
GSVIVG01035802001 Vitis vinifera HOM05D003627 ORTHO05D004307 3.5e-11 70.9 44 68.2
COL.COLO4_23986 Corchorus olitorius HOM05D003627 ORTHO05D004307 4.5e-11 70.5 43 69.8
Gohir.A13G206900 Gossypium hirsutum HOM05D003627 ORTHO05D004307 4.5e-11 70.5 44 68.2
Gohir.D13G211500 Gossypium hirsutum HOM05D003627 ORTHO05D004307 4.5e-11 70.5 44 68.2
Gorai.013G241600 Gossypium raimondii HOM05D003627 ORTHO05D004307 4.5e-11 70.5 44 68.2
Gorai.013G110700 Gossypium raimondii HOM05D003627 ORTHO05D004307 5.9e-11 70.1 44 68.2
Peaxi162Scf00341g00821 Petunia axillaris HOM05D003627 ORTHO05D004307 5.9e-11 70.1 41 70.7
Sabra06G0195600 Salix brachista HOM05D003627 ORTHO05D004307 5.9e-11 70.1 44 68.2
MSTRG.13989 Avicennia marina HOM05D003627 ORTHO05D004307 7.8e-11 69.7 44 63.6
Cfa013184 Carpinus fangiana HOM05D003627 ORTHO05D004307 7.8e-11 69.7 44 65.9
Duzib187G0128 Durio zibethinus HOM05D003627 ORTHO05D004307 7.8e-11 69.7 44 68.2
FvH4_2g29690 Fragaria vesca HOM05D003627 ORTHO05D004307 7.8e-11 69.7 44 65.9
FAN15G2106 Fragaria x ananassa HOM05D003627 ORTHO05D004307 7.8e-11 69.7 44 65.9
FAN20G0596 Fragaria x ananassa HOM05D003627 ORTHO05D004307 7.8e-11 69.7 44 65.9
FAN24G2732 Fragaria x ananassa HOM05D003627 ORTHO05D004307 7.8e-11 69.7 44 65.9
FAN27G2400 Fragaria x ananassa HOM05D003627 ORTHO05D004307 7.8e-11 69.7 44 65.9
MBI01_g13086_MAGBIO Magnolia biondii HOM05D003627 ORTHO05D004307 7.8e-11 69.7 43 69.8
Manes.16G119000 Manihot esculenta HOM05D003627 ORTHO05D004307 7.8e-11 69.7 44 68.2
CSS0039202 Camellia sinensis var. sinensis HOM05D003627 ORTHO05D004307 1.0e-10 69.3 44 63.6
RcHm_v2.0_Chr6g0298671 Rosa chinensis HOM05D003627 ORTHO05D004307 1.0e-10 69.3 44 65.9
TAR625G0096 Trochodendron aralioides HOM05D003627 ORTHO05D004307 1.0e-10 69.3 44 65.9
Actinidia13260 Actinidia chinensis HOM05D003627 ORTHO05D004307 1.3e-10 68.9 44 63.6
Lalb_Chr08g0243901 Lupinus albus HOM05D003627 ORTHO05D004307 1.3e-10 68.9 44 59.1
MD08G1143000 Malus domestica HOM05D003627 ORTHO05D004307 1.3e-10 68.9 44 65.9
MD15G1119900 Malus domestica HOM05D003627 ORTHO05D004307 1.3e-10 68.9 44 65.9
Sabra18G0032500 Salix brachista HOM05D003627 ORTHO05D004307 1.3e-10 68.9 44 65.9
TAR626G0665 Trochodendron aralioides HOM05D003627 ORTHO05D004307 1.3e-10 68.9 44 68.2
Actinidia15690 Actinidia chinensis HOM05D003627 ORTHO05D004307 1.7e-10 68.6 44 63.6
ATR0737G081 Amborella trichopoda HOM05D003627 ORTHO05D004307 1.7e-10 68.6 43 65.1
CSS0004095 Camellia sinensis var. sinensis HOM05D003627 ORTHO05D004307 1.7e-10 68.6 44 63.6
Ca_12928_v3 Cicer arietinum L. HOM05D003627 ORTHO05D004307 1.7e-10 68.6 43 62.8
Lj1g0024003 Lotus japonicus HOM05D003627 ORTHO05D004307 1.7e-10 68.6 43 65.1
Lalb_Chr23g0268801 Lupinus albus HOM05D003627 ORTHO05D004307 1.7e-10 68.6 44 61.4
Nitab4.5_0006827g0010 Nicotiana tabacum HOM05D003627 ORTHO05D004307 1.7e-10 68.6 41 70.7
Oeu030075.1 Olea europaea HOM05D003627 ORTHO05D004307 1.7e-10 68.6 43 65.1
Oeu031576.1 Olea europaea HOM05D003627 ORTHO05D004307 1.7e-10 68.6 43 65.1
TWI34G0954 Tripterygium wilfordii HOM05D003627 ORTHO05D004307 1.7e-10 68.6 44 65.9
HPP92_001612 Vanilla planifolia HOM05D003627 ORTHO05D004307 1.7e-10 68.6 43 65.1
Cc11_g01730 Coffea canephora HOM05D003627 ORTHO05D004307 2.9e-10 67.8 43 67.4
Eucgr.C02813 Eucalyptus grandis HOM05D003627 ORTHO05D004307 2.9e-10 67.8 44 63.6
Nn8g39358 Nelumbo nucifera HOM05D003627 ORTHO05D004307 2.9e-10 67.8 42 71.4
vmacro05197 Vaccinium macrocarpon HOM05D003627 ORTHO05D004307 2.9e-10 67.8 44 61.4
Glyma.14G126300 Glycine max HOM05D003627 ORTHO05D004307 3.9e-10 67.4 43 62.8
Glyma.17G208000 Glycine max HOM05D003627 ORTHO05D004307 3.9e-10 67.4 43 62.8
Phvul.001G121500 Phaseolus vulgaris HOM05D003627 ORTHO05D004307 3.9e-10 67.4 43 62.8
SalBow4G0188 Salvia bowleyana HOM05D003627 ORTHO05D004307 3.9e-10 67.4 44 61.4
Dinv30181 Davidia involucrata HOM05D003627 ORTHO05D004307 5.0e-10 67.0 44 61.4
ECA236G1938 Erigeron canadensis HOM05D003627 ORTHO05D004307 5.0e-10 67.0 43 67.4
Manes.03G017600 Manihot esculenta HOM05D003627 ORTHO05D004307 5.0e-10 67.0 44 61.4
Haze_21577 Corylus avellana HOM05D003627 ORTHO05D004307 6.6e-10 66.6 44 63.6
Gohir.D03G071300 Gossypium hirsutum HOM05D003627 ORTHO05D004307 6.6e-10 66.6 44 65.9
THA.LOC104803827 Tarenaya hassleriana HOM05D003627 ORTHO05D004307 6.6e-10 66.6 44 59.1
Medtr1g011880 Medicago truncatula HOM05D003627 ORTHO05D004307 8.6e-10 66.2 43 62.8
Os03g0806900 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 8.6e-10 66.2 44 61.4
QL02p087302 Quercus lobata HOM05D003627 ORTHO05D004307 8.6e-10 66.2 44 63.6
Sc06g0000590 Simmondsia chinensis HOM05D003627 ORTHO05D004307 1.1e-09 65.9 42 66.7
arahy.Tifrunner.gnm1.ann1.8QVL0P Arachis hypogaea HOM05D003627 ORTHO05D004307 1.5e-09 65.5 44 56.8
arahy.Tifrunner.gnm1.ann1.J127JW Arachis hypogaea HOM05D003627 ORTHO05D004307 1.5e-09 65.5 44 56.8
CDE10G0960 Ceratophyllum demersum HOM05D003627 ORTHO05D004307 1.5e-09 65.5 43 60.5
HanXRQChr05g0142301 Helianthus annuus HOM05D003627 ORTHO05D004307 1.5e-09 65.5 43 65.1
HanXRQChr06g0179891 Helianthus annuus HOM05D003627 ORTHO05D004307 1.5e-09 65.5 43 65.1
Psat6g030080 Pisum sativum HOM05D003627 ORTHO05D004307 1.5e-09 65.5 43 60.5
Lsat_1_v5_gn_8_57600 Lactuca sativa HOM05D003627 ORTHO05D004307 1.9e-09 65.1 43 65.1
TPR.G15658 Trifolium pratense HOM05D003627 ORTHO05D004307 1.9e-09 65.1 43 60.5
Zm00001eb212550 Zea mays HOM05D003627 ORTHO05D004307 1.9e-09 65.1 42 64.3
CDE10G0654 Ceratophyllum demersum HOM05D003627 ORTHO05D004307 2.5e-09 64.7 43 60.5
Ah.10g026040 Amaranthus hybridus HOM05D003627 ORTHO05D004307 3.3e-09 64.3 42 64.3
Ah.10g026070 Amaranthus hybridus HOM05D003627 ORTHO05D004307 3.3e-09 64.3 42 64.3
C03p87330 Brassica napus HOM05D003627 ORTHO05D004307 3.3e-09 64.3 44 59.1
SalBow8G5246 Salvia bowleyana HOM05D003627 ORTHO05D004307 3.3e-09 64.3 44 56.8
SalBow8G5369 Salvia bowleyana HOM05D003627 ORTHO05D004307 3.3e-09 64.3 44 56.8
Hund03017 Selenicereus undatus HOM05D003627 ORTHO05D004307 3.3e-09 64.3 42 64.3
Aa31LG2G19380 Aethionema arabicum HOM05D003627 ORTHO05D004307 4.3e-09 63.9 44 59.1
CARHR240390 Cardamine hirsuta HOM05D003627 ORTHO05D004307 4.3e-09 63.9 44 56.8
Gohir.1Z049369 Gossypium hirsutum HOM05D003627 ORTHO05D004307 4.3e-09 63.9 43 65.1
HanXRQChr03g0062131 Helianthus annuus HOM05D003627 ORTHO05D004307 4.3e-09 63.9 43 65.1
Os07g0205000 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 4.3e-09 63.9 44 59.1
Sp7g30260 Schrenkiella parvula HOM05D003627 ORTHO05D004307 4.3e-09 63.9 44 59.1
AL7G19340 Arabidopsis lyrata HOM05D003627 ORTHO05D004307 5.6e-09 63.5 44 56.8
AT4G32470 Arabidopsis thaliana HOM05D003627 ORTHO05D004307 5.6e-09 63.5 44 56.8
Carub.0007s0811 Capsella rubella HOM05D003627 ORTHO05D004307 5.6e-09 63.5 44 56.8
ECA240G2460 Erigeron canadensis HOM05D003627 ORTHO05D004307 5.6e-09 63.5 43 62.8
Thhalv10023759m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 5.6e-09 63.5 44 56.8
Thhalv10026575m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 5.6e-09 63.5 44 56.8
Sp4g05010 Schrenkiella parvula HOM05D003627 ORTHO05D004307 5.6e-09 63.5 44 56.8
Aqoxy7G02033 Aquilegia oxysepala HOM05D003627 ORTHO05D004307 7.3e-09 63.2 43 60.5
unitig_32.g10929 Utricularia gibba HOM05D003627 ORTHO05D004307 7.3e-09 63.2 41 61.0
unitig_748.g8200 Utricularia gibba HOM05D003627 ORTHO05D004307 7.3e-09 63.2 41 61.0
Zm00001eb061560 Zea mays HOM05D003627 ORTHO05D004307 7.3e-09 63.2 42 61.9
VMungo0647G0605 Vigna mungo HOM05D003627 ORTHO05D004307 9.5e-09 62.8 43 58.1
DCAR_003029 Daucus carota HOM05D003627 ORTHO05D004307 1.2e-08 62.4 44 54.5
PSO170G3425 Papaver somniferum HOM05D003627 ORTHO05D004307 1.2e-08 62.4 43 58.1
PSO455G0147 Papaver somniferum HOM05D003627 ORTHO05D004307 1.2e-08 62.4 43 58.1
HPP92_000819 Vanilla planifolia HOM05D003627 ORTHO05D004307 1.2e-08 62.4 41 63.4
BcaB03g12747 Brassica carinata HOM05D003627 ORTHO05D004307 2.1e-08 61.6 44 56.8
BcaC01g01021 Brassica carinata HOM05D003627 ORTHO05D004307 2.1e-08 61.6 44 56.8
BcaC09g52038 Brassica carinata HOM05D003627 ORTHO05D004307 2.1e-08 61.6 44 56.8
A08p18170 Brassica napus HOM05D003627 ORTHO05D004307 2.1e-08 61.6 44 56.8
BolC3t21033H Brassica oleracea HOM05D003627 ORTHO05D004307 2.1e-08 61.6 44 56.8
BraA08t33770Z Brassica rapa HOM05D003627 ORTHO05D004307 2.1e-08 61.6 44 56.8
Zm00001eb094460 Zea mays HOM05D003627 ORTHO05D004307 2.1e-08 61.6 41 61.0
CARHR115730 Cardamine hirsuta HOM05D003627 ORTHO05D004307 2.8e-08 61.2 43 55.8
Peaxi162Scf00361g00612 Petunia axillaris HOM05D003627 ORTHO05D004307 3.6e-08 60.8 44 54.5
SEGI_30503 Sequoiadendron giganteum HOM05D003627 ORTHO05D004307 3.6e-08 60.8 41 58.5
CAN.G536.8 Capsicum annuum HOM05D003627 ORTHO05D001832 6.1e-08 60.1 33 75.8
MBI04_g38347_MAGBIO Magnolia biondii HOM05D003627 ORTHO05D004307 6.1e-08 60.1 43 60.5
Nn1g01248 Nelumbo nucifera HOM05D001793 ORTHO05D001938 6.1e-08 60.1 44 59.1
Lsat_1_v5_gn_7_42641 Lactuca sativa HOM05D003627 ORTHO05D004307 8.0e-08 59.7 43 55.8
AagrBONN_evm.TU.Sc2ySwM_344.1095 Anthoceros agrestis HOM05D003627 ORTHO05D004307 1.0e-07 59.3 41 53.7
A01p05900 Brassica napus HOM05D003627 ORTHO05D004307 1.4e-07 58.9 44 54.5
BraA01t00557Z Brassica rapa HOM05D003627 ORTHO05D004307 1.4e-07 58.9 44 54.5
Nitab4.5_0000010g0100 Nicotiana tabacum HOM05D003627 ORTHO05D004307 1.4e-07 58.9 44 52.3
C01p06520 Brassica napus HOM05D003627 ORTHO05D004307 2.3e-07 58.2 44 54.5
BolC1t00646H Brassica oleracea HOM05D003627 ORTHO05D004307 2.3e-07 58.2 44 54.5
AUR62024869 Chenopodium quinoa HOM05D003627 ORTHO05D004307 3.1e-07 57.8 42 57.1
Sc09g0008620 Simmondsia chinensis HOM05D003627 ORTHO05D004307 1.5e-06 55.5 33 69.7
SGA_v2.0_scaffold399G50806 Striga asiatica HOM05D005821 ORTHO05D006649 1.5e-06 55.5 32 71.9


User provided reference genes

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