Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 0.0e+00 1265.0 706 100.0
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 2.7e-289 998.4 705 81.0
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 9.7e-287 989.9 723 79.5
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 2.1e-257 892.5 712 72.9
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 5.9e-252 874.4 714 72.5
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 2.3e-251 872.5 650 78.6
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 2.1e-249 865.9 711 72.3
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 5.2e-248 861.3 718 72.4
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 9.8e-247 857.1 757 69.1
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 1.3e-246 856.7 712 72.5
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 5.4e-245 851.3 717 72.5
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 3.5e-244 848.6 700 71.4
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 3.5e-244 848.6 711 70.7
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 4.5e-244 848.2 712 70.6
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.8e-240 836.3 715 69.9
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 5.8e-239 831.2 707 70.6
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 4.9e-238 828.2 714 69.5
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 9.2e-237 823.9 707 70.4
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 2.0e-236 822.8 700 69.9
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 4.6e-236 821.6 713 69.7
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 1.7e-235 819.7 717 68.8
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 6.6e-235 817.8 712 70.6
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 1.1e-234 817.0 710 69.3
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 1.1e-234 817.0 710 69.4
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 8.0e-233 810.8 715 68.4
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.1e-232 810.4 715 68.0
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 3.1e-232 808.9 714 68.3
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 9.8e-231 803.9 710 68.2
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 1.4e-229 800.0 714 68.1
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 5.4e-229 798.1 738 66.3
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.9e-227 792.0 711 67.8
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 4.3e-226 788.5 610 75.4
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 4.7e-225 785.0 734 67.3
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.5e-223 780.0 716 67.2
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 8.3e-222 774.2 712 67.1
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 2.1e-220 769.6 718 65.3
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 2.8e-217 759.2 715 64.5
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.1e-216 757.3 614 73.1
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 5.8e-215 751.5 717 65.1
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 3.2e-213 745.7 726 63.6
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 5.4e-213 745.0 726 63.5
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 2.3e-211 739.6 722 64.0
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 1.1e-210 737.3 707 64.2
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 7.3e-210 734.6 717 63.9
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 1.6e-209 733.4 717 62.6
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 2.8e-209 732.6 771 61.5
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 4.8e-209 731.9 712 65.7
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 4.8e-209 731.9 707 64.9
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 1.8e-208 729.9 714 63.2
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 1.8e-208 729.9 731 62.5
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 3.1e-208 729.2 728 63.9
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 3.4e-207 725.7 713 63.7
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 5.4e-205 718.4 713 61.9
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 1.6e-204 716.8 716 62.7
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.1e-202 710.7 741 61.4
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 1.1e-202 710.7 705 63.1
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 3.3e-202 709.1 709 62.2
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 1.4e-200 703.7 700 62.7
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 1.2e-199 700.7 631 68.6
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 2.0e-199 699.9 724 61.3
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 3.8e-198 695.7 711 62.0
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 5.4e-197 691.8 717 61.5
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 2.1e-196 689.9 729 59.9
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 4.6e-196 688.7 729 60.1
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 6.0e-196 688.3 729 59.9
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 6.0e-196 688.3 734 61.7
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 7.9e-196 688.0 734 61.6
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 1.3e-195 687.2 729 59.8
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 3.0e-195 686.0 734 61.4
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 8.7e-195 684.5 719 60.1
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 3.3e-194 682.6 742 60.5
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 7.4e-194 681.4 718 60.9
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.8e-193 679.5 743 60.4
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 4.8e-193 678.7 712 60.8
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.2e-191 674.1 709 59.8
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 1.7e-190 670.2 717 59.7
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 1.1e-189 667.5 730 58.9
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 1.9e-189 666.8 716 59.1
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 5.5e-189 665.2 714 59.4
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 7.1e-189 664.8 741 57.5
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 2.1e-188 663.3 712 59.6
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 7.9e-188 661.4 707 59.5
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 3.9e-187 659.1 723 59.3
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 6.7e-187 658.3 745 58.7
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 5.3e-184 648.7 728 57.7
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 2.7e-180 636.3 731 57.5
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 3.5e-180 636.0 719 58.6
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 4.6e-180 635.6 743 58.0
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 7.4e-178 628.2 718 58.4
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 2.8e-177 626.3 776 54.6
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 6.3e-177 625.2 720 57.6
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 7.7e-175 618.2 739 56.2
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 6.5e-174 615.1 797 52.6
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 2.1e-172 610.1 707 55.7
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 1.8e-171 607.1 761 55.2
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 3.0e-171 606.3 485 69.9
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 3.9e-171 605.9 713 54.1
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 1.3e-169 600.9 716 55.0
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 1.7e-166 590.5 764 53.0
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 5.0e-166 589.0 726 54.5
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 2.1e-164 583.6 723 54.1
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 1.3e-161 574.3 723 54.1
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.3e-161 574.3 697 54.5
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 6.3e-161 572.0 741 51.8
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 6.5e-158 562.0 380 81.8
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 5.0e-150 535.8 621 57.5
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 2.0e-138 497.3 529 59.0
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.1e-136 491.5 665 52.3
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 2.6e-130 470.3 449 64.6
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.1e-115 421.8 499 58.5
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 8.9e-115 418.7 499 58.3
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 1.3e-105 388.3 739 41.3
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 4.3e-101 373.2 433 56.1
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.0e-94 350.5 229 83.8
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 1.2e-90 338.6 236 80.9
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 9.9e-90 335.5 439 53.1
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 7.6e-82 309.3 231 75.8
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 7.6e-82 309.3 211 79.6
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 7.6e-82 309.3 211 79.6
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 1.2e-79 302.0 441 48.8
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.2e-79 302.0 231 73.6
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 3.3e-77 293.9 386 52.8
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 6.2e-76 289.7 474 45.8
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 1.8e-75 288.1 186 83.3
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 3.4e-66 257.3 172 82.0
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 1.9e-64 251.5 418 42.1
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 5.5e-56 223.4 136 86.8
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 7.4e-53 213.0 414 42.5
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 4.5e-50 203.8 314 47.1
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 3.0e-46 191.0 459 36.8
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 9.1e-35 152.9 201 54.2
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 2.2e-33 148.3 243 44.4
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 1.2e-31 142.5 86 89.5
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 5.2e-30 137.1 92 76.1
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 5.7e-29 133.7 201 50.7
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 1.6e-26 125.6 212 45.8
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.2e-23 115.9 70 90.0
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.2e-23 115.9 70 90.0
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.2e-23 115.9 70 90.0
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.0e-22 112.8 72 84.7
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 5.2e-22 110.5 297 36.4
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.3e-20 105.9 70 87.1
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 4.0e-14 84.3 65 69.2
CDE02G3418 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 6.4e-12 77.0 303 31.4
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 1.8e-11 75.5 453 25.2
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 4.1e-11 74.3 75 61.3
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 4.6e-10 70.9 80 57.5
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 4.3e-08 64.3 50 76.0
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 3.6e-07 61.2 341 25.5
arahy.Tifrunner.gnm1.ann1.G8QSGL Arachis hypogaea HOM05D004485 ORTHO05D005485 6.2e-07 60.5 66 57.6
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 1.4e-06 59.3 480 25.6
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 1.8e-06 58.9 354 24.6
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 5.2e-06 57.4 328 25.6
Eucgr.B00942 Eucalyptus grandis HOM05D004897 ORTHO05D005928 8.9e-06 56.6 344 25.3
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 8.9e-06 56.6 328 25.6


User provided reference genes

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