Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 1.4e-154 549.7 303 100.0
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 8.2e-126 454.1 303 83.5
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 1.7e-123 446.4 305 83.3
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 7.7e-116 421.0 301 78.7
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 7.7e-116 421.0 301 78.7
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 1.7e-115 419.9 301 78.7
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 8.5e-115 417.5 305 71.1
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 3.2e-114 415.6 305 73.4
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.6e-111 406.0 304 69.7
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 1.7e-110 403.3 303 74.6
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 8.2e-110 401.0 301 72.8
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 1.8e-109 399.8 306 72.5
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 1.8e-109 399.8 296 74.7
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 5.9e-108 394.8 306 69.3
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 5.9e-108 394.8 304 70.7
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.3e-107 393.7 306 71.2
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 1.7e-107 393.3 303 70.3
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.2e-107 392.9 306 70.9
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.2e-107 392.9 306 70.9
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 2.9e-107 392.5 299 70.2
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 3.8e-107 392.1 306 70.9
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 6.5e-107 391.3 293 73.0
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 8.5e-107 391.0 302 68.2
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 2.5e-106 389.4 290 73.1
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 4.2e-106 388.7 305 68.9
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 9.4e-106 387.5 307 68.1
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 9.4e-106 387.5 306 68.6
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 1.2e-105 387.1 299 68.6
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 1.6e-105 386.7 307 69.7
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 6.1e-105 384.8 297 67.7
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 6.1e-105 384.8 301 70.1
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 1.4e-104 383.6 292 73.6
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 1.4e-104 383.6 303 73.3
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 2.3e-104 382.9 303 67.0
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 3.0e-104 382.5 306 68.0
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 5.2e-104 381.7 306 66.7
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 5.2e-104 381.7 306 74.2
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.2e-103 380.6 293 67.6
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 1.2e-103 380.6 293 67.6
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 1.5e-103 380.2 304 66.8
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 2.0e-103 379.8 306 70.9
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 2.6e-103 379.4 295 68.8
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 5.7e-103 378.3 292 68.2
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 5.7e-103 378.3 292 68.5
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 9.8e-103 377.5 304 71.4
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 9.8e-103 377.5 299 64.2
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 1.7e-102 376.7 307 68.1
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 2.8e-102 375.9 293 66.6
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 4.8e-102 375.2 306 72.5
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 6.3e-102 374.8 303 66.3
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 1.1e-101 374.0 307 66.1
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 1.4e-101 373.6 303 71.6
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 9.1e-101 370.9 305 64.3
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 1.2e-100 370.5 302 72.5
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 7.7e-100 367.9 308 64.0
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 1.3e-99 367.1 308 60.7
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 1.7e-99 366.7 292 66.8
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 2.3e-99 366.3 292 66.8
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 3.6e-97 359.0 294 63.6
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 4.7e-97 358.6 308 68.5
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 1.4e-96 357.1 295 65.1
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 2.3e-96 356.3 307 64.8
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 6.8e-96 354.8 298 67.4
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 3.4e-95 352.4 305 64.6
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 1.3e-94 350.5 307 64.5
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 1.3e-94 350.5 303 69.3
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 1.7e-94 350.1 292 67.1
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 1.1e-93 347.4 296 66.2
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 3.1e-93 345.9 296 64.2
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 4.1e-93 345.5 300 66.7
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 4.1e-93 345.5 300 67.7
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 5.4e-93 345.1 305 64.6
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 7.0e-93 344.7 238 78.2
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 2.0e-92 343.2 301 61.1
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 5.9e-92 341.7 303 67.0
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 2.9e-91 339.3 308 66.2
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 2.5e-90 336.3 295 66.8
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 3.3e-90 335.9 300 60.0
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 3.3e-90 335.9 360 57.8
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 5.6e-90 335.1 258 67.8
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 1.2e-89 334.0 290 58.3
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 1.2e-89 334.0 304 57.6
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 1.2e-89 334.0 305 62.3
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 2.8e-89 332.8 296 67.2
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 1.5e-87 327.0 315 55.2
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 5.7e-87 325.1 307 59.3
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 5.7e-87 325.1 307 59.3
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 9.8e-87 324.3 301 60.1
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 1.3e-86 323.9 243 72.4
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 1.7e-86 323.6 271 62.0
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 2.2e-86 323.2 228 83.3
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 2.2e-86 323.2 308 63.0
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 2.9e-86 322.8 306 61.8
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 3.7e-86 322.4 305 57.0
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 4.9e-86 322.0 302 58.9
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 1.1e-85 320.9 304 58.9
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 1.4e-85 320.5 307 58.6
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 7.0e-85 318.2 303 60.7
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 9.2e-85 317.8 303 60.7
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 9.2e-85 317.8 304 60.9
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 9.2e-85 317.8 273 70.7
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 1.6e-84 317.0 297 58.6
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 4.6e-84 315.5 312 58.0
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 7.8e-84 314.7 302 59.9
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 3.0e-83 312.8 312 59.0
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 5.0e-83 312.0 312 58.7
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 7.3e-82 308.1 304 60.5
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 1.4e-80 303.9 305 61.3
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.2e-79 300.8 299 53.8
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 2.6e-79 299.7 299 53.2
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 5.8e-79 298.5 314 53.5
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 7.5e-79 298.1 293 55.3
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 9.8e-79 297.7 279 61.3
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 9.8e-79 297.7 276 60.5
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 6.4e-78 295.0 225 67.6
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 7.0e-77 291.6 258 62.4
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 7.0e-77 291.6 320 50.0
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 2.3e-75 286.6 302 52.6
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 1.6e-68 263.8 283 53.4
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 3.9e-67 259.2 294 57.1
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 1.0e-59 234.6 186 65.1
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 4.3e-58 229.2 313 45.0
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 7.3e-58 228.4 226 55.8
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 9.0e-56 221.5 209 54.5
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 2.1e-52 210.3 181 58.6
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 3.4e-47 193.0 309 41.7
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 4.0e-40 169.5 280 43.2
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 9.0e-40 168.3 201 48.3
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 4.5e-39 166.0 182 44.5
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 3.0e-35 153.3 97 78.4
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 7.4e-34 148.7 130 59.2
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.6e-28 131.0 132 59.8
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.6e-28 131.0 132 59.8
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 3.3e-26 123.2 198 39.9
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 3.1e-24 116.7 66 81.8
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 6.9e-24 115.5 166 37.3
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 2.6e-23 113.6 68 77.9
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 1.2e-20 104.8 193 34.2
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 1.2e-20 104.8 64 79.7
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 6.1e-20 102.4 62 80.6
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.8e-16 90.9 67 64.2
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 1.5e-15 87.8 52 80.8
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.6e-12 77.8 119 45.4
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 2.1e-12 77.4 94 54.3
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.8e-11 74.3 45 71.1
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 3.9e-11 73.2 45 71.1
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 2.6e-10 70.5 39 82.1
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 7.4e-10 68.9 43 72.1
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 9.7e-10 68.6 136 46.3
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 1.5e-07 61.2 54 53.7
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 5.0e-06 56.2 101 42.6


User provided reference genes

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